Wall clock time and date at job start Mon Mar 30 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47513 * 2 1 4 4 H 1.09005 * 109.46968 * 304.17256 * 3 2 1 5 5 C 1.50694 * 109.47671 * 184.17136 * 3 2 1 6 6 H 1.07998 * 120.00183 * 240.00054 * 5 3 2 7 7 C 1.37883 * 120.00116 * 59.99573 * 5 3 2 8 8 N 1.31510 * 119.99846 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00013 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47051 * 90.00089 * 9 7 5 11 11 H 1.48496 * 109.47163 * 210.00041 * 9 7 5 12 12 H 1.48499 * 109.47253 * 330.00139 * 9 7 5 13 13 N 1.46900 * 109.47223 * 64.16602 * 3 2 1 14 14 C 1.46902 * 111.00206 * 207.23415 * 13 3 2 15 15 H 1.09001 * 110.87445 * 36.94294 * 14 13 3 16 16 C 1.54899 * 110.98990 * 273.09308 * 14 13 3 17 17 N 1.47843 * 104.79647 * 204.80067 * 16 14 13 18 18 C 1.46900 * 111.00305 * 146.36594 * 17 16 14 19 19 C 1.47445 * 108.56799 * 24.09624 * 17 16 14 20 20 C 1.53002 * 109.88758 * 118.41473 * 19 17 16 21 21 C 1.52998 * 109.89051 * 239.60670 * 19 17 16 22 22 C 1.54322 * 107.23056 * 359.01281 * 19 17 16 23 23 H 1.09002 * 109.47124 * 294.90253 * 1 2 3 24 24 H 1.09000 * 109.47224 * 54.89388 * 1 2 3 25 25 H 1.08995 * 109.47512 * 174.89842 * 1 2 3 26 26 H 1.09005 * 109.47041 * 239.99629 * 2 1 3 27 27 H 1.08999 * 109.47110 * 119.99935 * 2 1 3 28 28 H 0.96995 * 120.00127 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99784 * 83.28023 * 13 3 2 30 30 H 1.09004 * 110.37679 * 85.97183 * 16 14 13 31 31 H 1.09001 * 110.47244 * 323.67785 * 16 14 13 32 32 H 1.09003 * 109.47354 * 59.87060 * 18 17 16 33 33 H 1.08999 * 109.47380 * 179.87866 * 18 17 16 34 34 H 1.09001 * 109.47289 * 299.87446 * 18 17 16 35 35 H 1.09000 * 109.46933 * 61.46066 * 20 19 17 36 36 H 1.08996 * 109.46631 * 181.45643 * 20 19 17 37 37 H 1.08997 * 109.47385 * 301.45434 * 20 19 17 38 38 H 1.08999 * 109.47330 * 58.54054 * 21 19 17 39 39 H 1.09003 * 109.47230 * 178.54639 * 21 19 17 40 40 H 1.09000 * 109.46908 * 298.54144 * 21 19 17 41 41 H 1.09001 * 110.70364 * 219.33598 * 22 19 17 42 42 H 1.08998 * 110.85585 * 96.16435 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9774 -0.8503 5 6 3.5434 1.4437 -0.1033 6 1 4.1381 1.8921 0.6788 7 6 4.1598 0.8725 -1.1964 8 7 3.4357 0.3269 -2.1491 9 14 6.0235 0.8735 -1.3242 10 1 6.5638 -0.3555 -0.6894 11 1 6.4216 0.9079 -2.7543 12 1 6.5666 2.0687 -0.6302 13 7 1.6343 2.1053 1.2466 14 6 1.5066 3.5561 1.0540 15 1 1.0982 3.7827 0.0691 16 6 2.8667 4.2660 1.2676 17 7 2.5142 5.6496 1.6513 18 6 3.4895 6.1965 2.6040 19 6 1.1572 5.6457 2.2280 20 6 1.2073 6.1265 3.6797 21 6 0.2400 6.5541 1.4069 22 6 0.6417 4.1921 2.1740 23 1 -0.3633 0.4327 0.9321 24 1 -0.3634 0.5910 -0.8407 25 1 -0.3634 -1.0235 -0.0914 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8693 -0.0746 -2.9182 29 1 2.2785 1.8951 1.9941 30 1 3.4451 4.2641 0.3437 31 1 3.4280 3.7819 2.0668 32 1 4.4799 6.1996 2.1486 33 1 3.2076 7.2158 2.8678 34 1 3.5049 5.5797 3.5026 35 1 1.5851 7.1484 3.7111 36 1 0.2051 6.0963 4.1071 37 1 1.8673 5.4772 4.2550 38 1 0.2156 6.2076 0.3738 39 1 -0.7669 6.5261 1.8235 40 1 0.6179 7.5760 1.4385 41 1 -0.4146 4.1676 1.9060 42 1 0.8088 3.6855 3.1245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703424380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:57 Heat of formation + Delta-G solvation = -2.928670 kcal Electronic energy + Delta-G solvation = -18620.982082 eV Core-core repulsion = 16021.466921 eV Total energy + Delta-G solvation = -2599.515160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57457 -35.99434 -32.84199 -32.09640 -31.38505 -29.05994 -27.29509 -25.98711 -25.10007 -23.92347 -22.52273 -20.30475 -19.52719 -18.45225 -16.60256 -15.58222 -15.31496 -14.68366 -14.52429 -13.76642 -13.40727 -13.19544 -13.10611 -12.74089 -12.62839 -12.42279 -12.02216 -11.71488 -11.37864 -11.31084 -11.22851 -11.14751 -10.89115 -10.83997 -10.74986 -10.64231 -10.41501 -10.19448 -10.09737 -9.57549 -9.38205 -8.99620 -8.37392 -8.02006 -7.24118 -5.99221 -4.11551 3.26806 3.34380 3.36531 4.23126 4.39761 4.88659 5.07647 5.13722 5.27331 5.38438 5.53694 5.56652 5.63097 5.72340 5.79744 5.89914 5.92672 5.94995 6.01781 6.14455 6.20932 6.28902 6.37344 6.40856 6.50874 6.52616 6.70895 6.74310 6.80363 7.14843 7.17920 7.34083 7.42640 7.47257 7.60273 7.78614 8.09669 8.14400 8.34159 8.64856 9.00419 9.55870 11.01251 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.007704 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.839781 B = 3633.391620 C = 4489.085313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.097 3.903 15 H 0.082 0.918 16 C 0.023 3.977 17 N -0.527 5.527 18 C 0.021 3.979 19 C 0.089 3.911 20 C -0.159 4.159 21 C -0.124 4.124 22 C -0.124 4.124 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.327 0.673 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 8.937 8.365 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.306 5.306 14 C -0.016 4.016 15 H 0.100 0.900 16 C -0.106 4.106 17 N -0.251 5.251 18 C -0.128 4.128 19 C -0.001 4.001 20 C -0.217 4.217 21 C -0.182 4.182 22 C -0.163 4.163 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.752 9.022 7.634 12.738 hybrid contribution 2.192 -0.284 0.526 2.272 sum -2.560 8.738 8.160 12.227 Atomic orbital electron populations 1.21686 0.99034 0.98241 1.00356 1.21507 0.92056 0.99318 1.01639 1.19202 0.92826 0.91095 0.86102 0.94971 1.21855 0.92544 1.37856 1.05815 0.92785 1.24918 0.97789 0.95041 0.95705 1.69871 1.34829 1.38048 1.09550 0.86692 0.86311 0.78333 0.77233 1.20741 1.21222 1.20083 1.60903 1.54006 1.05562 1.10131 1.22502 0.92520 0.88826 0.97713 0.89980 1.23848 0.99364 0.86578 1.00789 1.63602 1.01102 1.21785 1.38617 1.22529 0.96270 0.99416 0.94584 1.21760 0.90078 0.95637 0.92576 1.22338 1.01771 1.01134 0.96428 1.21714 0.97302 0.98809 1.00360 1.22879 1.00209 0.93396 0.99778 0.93519 0.94459 0.95725 0.89187 0.95171 0.92905 0.85570 0.89557 0.94138 0.92086 0.91814 0.95494 0.92300 0.92472 0.92568 0.92130 0.92997 0.93053 0.91167 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.15 0.36 -2.43 16 2 C -0.11 -2.53 5.45 -26.74 -0.15 -2.68 16 3 C 0.22 5.20 1.99 -68.87 -0.14 5.06 16 4 H 0.03 0.87 7.45 -51.93 -0.39 0.48 16 5 C -0.54 -14.15 7.79 -34.44 -0.27 -14.42 16 6 H 0.05 1.40 7.23 -52.49 -0.38 1.02 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.78 11.30 55.43 0.63 -24.15 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.85 5.67 -98.72 -0.56 -14.41 16 14 C 0.10 1.79 3.31 -65.58 -0.22 1.57 16 15 H 0.08 1.67 7.53 -51.93 -0.39 1.28 16 16 C 0.02 0.42 5.20 -2.30 -0.01 0.41 16 17 N -0.53 -8.30 5.07 -223.92 -1.14 -9.44 16 18 C 0.02 0.28 8.30 60.06 0.50 0.78 16 19 C 0.09 1.24 1.15 -130.61 -0.15 1.09 16 20 C -0.16 -1.86 7.16 37.16 0.27 -1.59 16 21 C -0.12 -1.59 8.71 37.16 0.32 -1.27 16 22 C -0.12 -1.89 5.71 -24.91 -0.14 -2.04 16 23 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.33 6.70 7.93 -39.29 -0.31 6.39 16 30 H 0.09 1.81 8.02 -51.93 -0.42 1.39 16 31 H 0.04 0.75 7.43 -51.93 -0.39 0.37 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.75 6.69 -51.93 -0.35 0.41 16 34 H 0.03 0.35 6.47 -51.93 -0.34 0.02 16 35 H 0.06 0.64 6.65 -51.93 -0.35 0.29 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.68 6.66 -51.93 -0.35 0.33 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 42 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -26.52 317.72 -8.72 -35.24 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.70 Total: 5.74 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.28 Total: -13.76 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.07 Total: -48.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.52 -8.72 -35.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703424380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.309 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds