Wall clock time and date at job start Mon Mar 30 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46852 * 2 1 4 4 H 1.08999 * 109.47601 * 55.35358 * 3 2 1 5 5 C 1.50703 * 109.46683 * 175.35423 * 3 2 1 6 6 H 1.08005 * 119.99799 * 120.00012 * 5 3 2 7 7 C 1.37871 * 120.00441 * 299.99921 * 5 3 2 8 8 N 1.31517 * 119.99807 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00418 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47053 * 90.00103 * 9 7 5 11 11 H 1.48500 * 109.47574 * 209.99685 * 9 7 5 12 12 H 1.48504 * 109.47128 * 330.00216 * 9 7 5 13 13 N 1.46895 * 109.47270 * 295.35363 * 3 2 1 14 14 C 1.46899 * 111.00016 * 154.74402 * 13 3 2 15 15 H 1.08994 * 110.64710 * 330.52386 * 14 13 3 16 16 C 1.54938 * 110.72452 * 93.67711 * 14 13 3 17 17 N 1.48738 * 103.13396 * 155.62470 * 16 14 13 18 18 C 1.46900 * 111.04105 * 200.42586 * 17 16 14 19 19 C 1.47903 * 105.93999 * 321.03882 * 17 16 14 20 20 C 1.53003 * 109.91656 * 265.84554 * 19 17 16 21 21 C 1.52998 * 109.91784 * 144.55859 * 19 17 16 22 22 C 1.53993 * 107.06187 * 25.20409 * 19 17 16 23 23 H 1.08992 * 109.47192 * 65.57125 * 1 2 3 24 24 H 1.09002 * 109.47049 * 185.57622 * 1 2 3 25 25 H 1.09006 * 109.46610 * 305.57525 * 1 2 3 26 26 H 1.08997 * 109.46727 * 239.99725 * 2 1 3 27 27 H 1.08998 * 109.46947 * 120.00130 * 2 1 3 28 28 H 0.96999 * 120.00514 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00294 * 30.78810 * 13 3 2 30 30 H 1.08999 * 110.66870 * 274.20190 * 16 14 13 31 31 H 1.08993 * 110.66809 * 37.33892 * 16 14 13 32 32 H 1.08998 * 109.47020 * 177.57600 * 18 17 16 33 33 H 1.09002 * 109.47288 * 297.57179 * 18 17 16 34 34 H 1.09002 * 109.47299 * 57.58097 * 18 17 16 35 35 H 1.08995 * 109.47137 * 177.59210 * 20 19 17 36 36 H 1.08996 * 109.47474 * 297.59662 * 20 19 17 37 37 H 1.09005 * 109.47017 * 57.59583 * 20 19 17 38 38 H 1.09008 * 109.46807 * 302.40830 * 21 19 17 39 39 H 1.09007 * 109.47239 * 62.40087 * 21 19 17 40 40 H 1.08990 * 109.47880 * 182.40854 * 21 19 17 41 41 H 1.08999 * 110.30323 * 239.86006 * 22 19 17 42 42 H 1.08992 * 110.39174 * 117.73197 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6103 1.9798 0.8454 5 6 3.5426 1.4440 0.1151 6 1 4.1434 1.8902 -0.6637 7 6 4.1504 0.8759 1.2144 8 7 3.4189 0.3330 2.1630 9 14 6.0129 0.8784 1.3574 10 1 6.4537 2.1099 2.0606 11 1 6.4521 -0.3142 2.1256 12 1 6.6137 0.8416 -0.0002 13 7 1.6441 2.1018 -1.2515 14 6 1.5603 3.5579 -1.0759 15 1 1.2925 3.8063 -0.0490 16 6 2.8955 4.2358 -1.4735 17 7 2.4801 5.6200 -1.8254 18 6 3.4870 6.2738 -2.6719 19 6 1.1917 5.4882 -2.5397 20 6 1.4354 5.4391 -4.0494 21 6 0.2807 6.6676 -2.1932 22 6 0.5469 4.1714 -2.0692 23 1 -0.3633 0.4250 -0.9356 24 1 -0.3633 -1.0228 0.0999 25 1 -0.3633 0.5979 0.8359 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8464 -0.0671 2.9363 29 1 0.7726 1.7286 -1.5970 30 1 3.5896 4.2412 -0.6331 31 1 3.3380 3.7376 -2.3361 32 1 3.1380 7.2684 -2.9494 33 1 4.4245 6.3580 -2.1223 34 1 3.6456 5.6802 -3.5723 35 1 0.4861 5.2991 -4.5663 36 1 1.8917 6.3741 -4.3744 37 1 2.1021 4.6090 -4.2830 38 1 0.1309 6.7062 -1.1142 39 1 0.7438 7.5954 -2.5291 40 1 -0.6816 6.5414 -2.6892 41 1 0.3938 3.5017 -2.9155 42 1 -0.4006 4.3701 -1.5685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703424382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:03 Heat of formation + Delta-G solvation = -0.204288 kcal Electronic energy + Delta-G solvation = -18592.507083 eV Core-core repulsion = 15993.110061 eV Total energy + Delta-G solvation = -2599.397022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51136 -36.10772 -32.80183 -32.06410 -31.46408 -28.85419 -27.26745 -26.34807 -25.17360 -23.96117 -22.60484 -20.02838 -19.57168 -18.48479 -16.29914 -15.54586 -15.26427 -14.59674 -14.44028 -13.95311 -13.74032 -13.52006 -13.00759 -12.78218 -12.54786 -12.38006 -12.04351 -11.83711 -11.60233 -11.47590 -11.21113 -11.06832 -10.89098 -10.80618 -10.67599 -10.50144 -10.46378 -10.23233 -9.86708 -9.60758 -9.44182 -8.99764 -8.31132 -8.03211 -7.23273 -5.93114 -3.96378 3.34388 3.41006 3.45000 4.27194 4.48278 4.87085 5.02047 5.17287 5.32592 5.37006 5.47444 5.63408 5.63832 5.72274 5.76608 5.82566 5.92023 5.99533 6.04577 6.14629 6.16605 6.17955 6.20922 6.26531 6.40395 6.43041 6.54625 6.69042 6.79653 6.85933 7.10778 7.19303 7.30541 7.44867 7.56136 7.80937 7.96251 8.36231 8.42878 8.79133 9.10957 9.68226 11.12574 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.007630 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.572095 B = 3668.822817 C = 4547.227081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.098 3.902 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.519 5.519 18 C 0.017 3.983 19 C 0.089 3.911 20 C -0.165 4.165 21 C -0.126 4.126 22 C -0.129 4.129 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.259 0.741 29 H 0.319 0.681 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 8.531 -8.787 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.069 0.931 16 C -0.071 4.071 17 N -0.243 5.243 18 C -0.132 4.132 19 C -0.001 4.001 20 C -0.224 4.224 21 C -0.184 4.184 22 C -0.167 4.167 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.685 8.773 -8.390 13.012 hybrid contribution 0.363 -0.465 -0.066 0.593 sum -4.323 8.309 -8.456 12.618 Atomic orbital electron populations 1.21882 0.99675 0.99669 0.99507 1.21774 0.91150 1.00488 1.03038 1.19246 0.95467 0.89861 0.84304 0.97951 1.21201 0.91127 1.35896 1.04472 0.92030 1.24947 0.97960 0.95762 0.95892 1.69869 1.34681 1.39434 1.09744 0.86594 0.86067 0.77335 0.77981 1.20884 1.21427 1.19992 1.60728 1.35064 1.01407 1.34046 1.22219 0.93194 0.89253 0.96688 0.93051 1.23246 0.97851 0.85390 1.00589 1.64841 1.02127 1.19052 1.38267 1.22488 0.95995 0.98617 0.96077 1.21707 0.91302 0.95330 0.91766 1.22409 1.01783 1.01702 0.96467 1.21735 0.97733 0.96963 1.01935 1.22794 0.98677 0.95591 0.99661 0.94643 0.94431 0.93908 0.94101 0.88294 0.93157 0.86277 0.89591 0.93237 0.92147 0.91788 0.95115 0.92540 0.92475 0.92340 0.92023 0.93171 0.92938 0.91050 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.13 -2.95 5.36 -26.73 -0.14 -3.09 16 3 C 0.22 5.37 2.03 -68.87 -0.14 5.23 16 4 H 0.00 0.08 7.41 -51.93 -0.38 -0.31 16 5 C -0.49 -13.26 8.30 -34.44 -0.29 -13.55 16 6 H 0.06 1.70 7.35 -52.48 -0.39 1.31 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.54 11.30 55.43 0.63 -24.91 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.20 6.18 -99.01 -0.61 -14.81 16 14 C 0.10 1.86 3.36 -65.85 -0.22 1.64 16 15 H 0.05 1.09 7.40 -51.93 -0.38 0.71 16 16 C 0.06 1.07 5.36 -1.78 -0.01 1.06 16 17 N -0.52 -8.27 5.17 -222.98 -1.15 -9.42 16 18 C 0.02 0.23 8.32 60.06 0.50 0.73 16 19 C 0.09 1.25 0.89 -130.53 -0.12 1.13 16 20 C -0.17 -2.03 6.98 37.16 0.26 -1.77 16 21 C -0.13 -1.54 8.64 37.16 0.32 -1.22 16 22 C -0.13 -1.96 5.69 -25.37 -0.14 -2.11 16 23 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.32 6.09 6.07 -39.29 -0.24 5.86 16 30 H 0.09 1.82 8.12 -51.93 -0.42 1.40 16 31 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 32 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.41 6.28 -51.93 -0.33 0.08 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 37 H 0.06 0.79 7.59 -51.93 -0.39 0.40 16 38 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 42 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -27.70 317.12 -8.75 -36.45 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.65 Total: 4.43 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 0.28 Total: -13.06 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -1.14 Total: -49.15 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.70 -8.75 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703424382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.245 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds