Wall clock time and date at job start Mon Mar 30 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46852 * 2 1 4 4 H 1.08999 * 109.47601 * 55.35358 * 3 2 1 5 5 C 1.50703 * 109.46683 * 175.35423 * 3 2 1 6 6 H 1.08005 * 119.99799 * 120.00012 * 5 3 2 7 7 C 1.37871 * 120.00441 * 299.99921 * 5 3 2 8 8 N 1.31517 * 119.99807 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00418 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47053 * 90.00103 * 9 7 5 11 11 H 1.48500 * 109.47574 * 209.99685 * 9 7 5 12 12 H 1.48504 * 109.47128 * 330.00216 * 9 7 5 13 13 N 1.46895 * 109.47270 * 295.35363 * 3 2 1 14 14 C 1.46899 * 111.00016 * 154.74402 * 13 3 2 15 15 H 1.08994 * 110.64710 * 330.52386 * 14 13 3 16 16 C 1.54938 * 110.72452 * 93.67711 * 14 13 3 17 17 N 1.48738 * 103.13396 * 155.62470 * 16 14 13 18 18 C 1.46900 * 111.04105 * 200.42586 * 17 16 14 19 19 C 1.47903 * 105.93999 * 321.03882 * 17 16 14 20 20 C 1.53003 * 109.91656 * 265.84554 * 19 17 16 21 21 C 1.52998 * 109.91784 * 144.55859 * 19 17 16 22 22 C 1.53993 * 107.06187 * 25.20409 * 19 17 16 23 23 H 1.08992 * 109.47192 * 65.57125 * 1 2 3 24 24 H 1.09002 * 109.47049 * 185.57622 * 1 2 3 25 25 H 1.09006 * 109.46610 * 305.57525 * 1 2 3 26 26 H 1.08997 * 109.46727 * 239.99725 * 2 1 3 27 27 H 1.08998 * 109.46947 * 120.00130 * 2 1 3 28 28 H 0.96999 * 120.00514 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00294 * 30.78810 * 13 3 2 30 30 H 1.08999 * 110.66870 * 274.20190 * 16 14 13 31 31 H 1.08993 * 110.66809 * 37.33892 * 16 14 13 32 32 H 1.08998 * 109.47020 * 177.57600 * 18 17 16 33 33 H 1.09002 * 109.47288 * 297.57179 * 18 17 16 34 34 H 1.09002 * 109.47299 * 57.58097 * 18 17 16 35 35 H 1.08995 * 109.47137 * 177.59210 * 20 19 17 36 36 H 1.08996 * 109.47474 * 297.59662 * 20 19 17 37 37 H 1.09005 * 109.47017 * 57.59583 * 20 19 17 38 38 H 1.09008 * 109.46807 * 302.40830 * 21 19 17 39 39 H 1.09007 * 109.47239 * 62.40087 * 21 19 17 40 40 H 1.08990 * 109.47880 * 182.40854 * 21 19 17 41 41 H 1.08999 * 110.30323 * 239.86006 * 22 19 17 42 42 H 1.08992 * 110.39174 * 117.73197 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6103 1.9798 0.8454 5 6 3.5426 1.4440 0.1151 6 1 4.1434 1.8902 -0.6637 7 6 4.1504 0.8759 1.2144 8 7 3.4189 0.3330 2.1630 9 14 6.0129 0.8784 1.3574 10 1 6.4537 2.1099 2.0606 11 1 6.4521 -0.3142 2.1256 12 1 6.6137 0.8416 -0.0002 13 7 1.6441 2.1018 -1.2515 14 6 1.5603 3.5579 -1.0759 15 1 1.2925 3.8063 -0.0490 16 6 2.8955 4.2358 -1.4735 17 7 2.4801 5.6200 -1.8254 18 6 3.4870 6.2738 -2.6719 19 6 1.1917 5.4882 -2.5397 20 6 1.4354 5.4391 -4.0494 21 6 0.2807 6.6676 -2.1932 22 6 0.5469 4.1714 -2.0692 23 1 -0.3633 0.4250 -0.9356 24 1 -0.3633 -1.0228 0.0999 25 1 -0.3633 0.5979 0.8359 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8464 -0.0671 2.9363 29 1 0.7726 1.7286 -1.5970 30 1 3.5896 4.2412 -0.6331 31 1 3.3380 3.7376 -2.3361 32 1 3.1380 7.2684 -2.9494 33 1 4.4245 6.3580 -2.1223 34 1 3.6456 5.6802 -3.5723 35 1 0.4861 5.2991 -4.5663 36 1 1.8917 6.3741 -4.3744 37 1 2.1021 4.6090 -4.2830 38 1 0.1309 6.7062 -1.1142 39 1 0.7438 7.5954 -2.5291 40 1 -0.6816 6.5414 -2.6892 41 1 0.3938 3.5017 -2.9155 42 1 -0.4006 4.3701 -1.5685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703424382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:02 Heat of formation + Delta-G solvation = -18.641567 kcal Electronic energy + Delta-G solvation = -18593.306584 eV Core-core repulsion = 15993.110061 eV Total energy + Delta-G solvation = -2600.196523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79812 -37.87565 -34.61661 -33.29473 -33.22158 -30.39141 -28.48217 -28.00874 -26.49055 -25.34714 -24.38517 -21.53955 -21.46312 -19.67047 -18.35794 -17.00562 -16.78155 -16.38693 -15.73907 -15.56711 -15.07766 -15.02307 -14.57661 -14.12180 -13.98651 -13.77680 -13.36245 -13.33283 -13.07234 -12.83312 -12.61133 -12.58827 -12.56534 -12.29443 -12.16398 -11.99076 -11.77754 -11.71030 -11.69850 -11.47853 -11.07917 -10.94712 -10.41553 -9.29122 -9.03584 -8.05227 -6.15518 1.39653 1.40686 1.50757 2.43890 3.01294 3.20336 3.68480 3.74059 3.83835 4.07973 4.28206 4.43436 4.49648 4.53631 4.56550 4.58184 4.61366 4.71620 4.74544 4.81068 4.89097 4.97025 5.01093 5.04025 5.08709 5.11240 5.14289 5.22131 5.26701 5.29044 5.39823 5.51882 5.62202 5.76955 5.90973 6.02896 6.25124 6.39156 6.54687 6.97375 7.02146 7.52779 8.98481 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.007630 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.572095 B = 3668.822817 C = 4547.227081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.226 3.774 4 H -0.034 1.034 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.677 5.677 14 C 0.094 3.906 15 H 0.022 0.978 16 C 0.067 3.933 17 N -0.529 5.529 18 C 0.016 3.984 19 C 0.085 3.915 20 C -0.159 4.159 21 C -0.121 4.121 22 C -0.119 4.119 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.259 0.741 29 H 0.331 0.669 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 9.531 -10.640 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.017 1.017 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.309 5.309 14 C -0.017 4.017 15 H 0.040 0.960 16 C -0.062 4.062 17 N -0.253 5.253 18 C -0.132 4.132 19 C -0.004 4.004 20 C -0.217 4.217 21 C -0.179 4.179 22 C -0.158 4.158 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.527 9.786 -10.262 15.219 hybrid contribution 0.612 -0.732 0.505 1.079 sum -4.915 9.054 -9.757 14.189 Atomic orbital electron populations 1.21747 0.96230 1.01120 1.00516 1.21597 0.94260 0.98963 1.01198 1.18996 0.94098 0.90566 0.84530 1.01685 1.21452 0.92652 1.35621 1.04296 0.93060 1.25647 1.01986 0.95611 0.95711 1.69999 1.36129 1.40004 1.10082 0.85679 0.81318 0.77367 0.78001 1.20650 1.20835 1.19575 1.60615 1.35868 1.02520 1.31914 1.22196 0.94903 0.88242 0.96392 0.96001 1.22938 0.96965 0.87473 0.98788 1.64818 1.03595 1.16841 1.40059 1.22556 0.95346 0.99559 0.95733 1.21861 0.90331 0.95380 0.92874 1.22347 1.02601 1.01890 0.94910 1.21708 0.98381 0.96443 1.01359 1.22760 0.98016 0.96206 0.98775 0.92184 0.92407 0.94635 0.94427 0.91516 0.93203 0.84967 0.93116 0.94288 0.89744 0.92345 0.94625 0.90664 0.91011 0.93852 0.93357 0.92058 0.90742 0.90078 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.63 71.98 0.69 -4.49 16 2 C -0.12 -5.77 5.36 30.60 0.16 -5.60 16 3 C 0.23 11.48 2.03 44.17 0.09 11.57 16 4 H -0.03 -1.97 7.41 -2.39 -0.02 -1.99 16 5 C -0.50 -28.14 8.30 25.60 0.21 -27.92 16 6 H 0.05 2.92 7.35 -2.91 -0.02 2.90 16 7 C 0.01 0.46 5.29 84.65 0.45 0.91 16 8 N -0.92 -53.94 11.30 21.45 0.24 -53.69 16 9 Si 0.95 45.11 29.54 68.60 2.03 47.13 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.68 -28.50 6.18 -467.17 -2.89 -31.39 16 14 C 0.09 3.62 3.36 46.12 0.15 3.78 16 15 H 0.02 0.98 7.40 -2.39 -0.02 0.96 16 16 C 0.07 2.58 5.36 86.61 0.46 3.05 16 17 N -0.53 -16.42 5.17 -859.38 -4.44 -20.87 16 18 C 0.02 0.42 8.32 127.69 1.06 1.48 16 19 C 0.09 2.19 0.89 3.67 0.00 2.19 16 20 C -0.16 -3.40 6.98 71.98 0.50 -2.90 16 21 C -0.12 -2.59 8.64 71.98 0.62 -1.97 16 22 C -0.12 -3.43 5.69 31.47 0.18 -3.25 16 23 H 0.06 1.93 6.61 -2.39 -0.02 1.92 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 3.62 5.96 -2.39 -0.01 3.61 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.33 12.32 6.07 -89.69 -0.54 11.78 16 30 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16 31 H 0.04 1.56 7.97 -2.39 -0.02 1.54 16 32 H 0.08 1.75 7.75 -2.39 -0.02 1.74 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 0.88 6.28 -2.39 -0.01 0.86 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.33 6.69 -2.39 -0.02 1.32 16 37 H 0.04 1.06 7.59 -2.38 -0.02 1.04 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 2.19 7.44 -2.39 -0.02 2.17 16 42 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 Total: -1.00 -61.44 317.12 -0.04 -61.48 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.42 Total: 20.49 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.60 Total: -23.15 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -7.08 Total: -105.95 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -61.44 -0.04 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703424382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.838 kcal (2) G-P(sol) polarization free energy of solvation -61.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds