Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.09008 * 109.46609 * 305.86225 * 3 2 1 5 5 C 1.50693 * 109.47488 * 185.86537 * 3 2 1 6 6 H 1.08002 * 119.99571 * 245.69592 * 5 3 2 7 7 C 1.37870 * 120.00419 * 65.68743 * 5 3 2 8 8 N 1.31521 * 120.00275 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00317 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47144 * 60.00268 * 9 7 5 11 11 H 1.48504 * 109.47407 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46957 * 300.00232 * 9 7 5 13 13 N 1.46900 * 109.47597 * 65.85641 * 3 2 1 14 14 C 1.46960 * 110.99552 * 42.07026 * 13 3 2 15 15 C 1.53050 * 109.36481 * 176.81188 * 14 13 3 16 16 N 1.46960 * 109.36203 * 58.40051 * 15 14 13 17 17 C 1.46960 * 110.88205 * 300.67930 * 16 15 14 18 18 C 1.46961 * 111.00079 * 278.27590 * 13 3 2 19 19 H 1.08998 * 109.49060 * 63.19381 * 18 13 3 20 20 C 1.52996 * 109.48442 * 303.14953 * 18 13 3 21 21 C 1.52997 * 109.47452 * 301.25321 * 20 18 13 22 22 C 1.53001 * 109.46931 * 181.25264 * 20 18 13 23 23 H 1.09001 * 109.46942 * 159.69323 * 1 2 3 24 24 H 1.08991 * 109.47368 * 279.69661 * 1 2 3 25 25 H 1.09001 * 109.46853 * 39.70259 * 1 2 3 26 26 H 1.08997 * 109.47688 * 239.99283 * 2 1 3 27 27 H 1.09000 * 109.47215 * 119.99241 * 2 1 3 28 28 H 0.96993 * 120.00225 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.49166 * 296.77863 * 14 13 3 30 30 H 1.09001 * 109.48873 * 56.84130 * 14 13 3 31 31 H 1.08998 * 109.49254 * 178.36637 * 15 14 13 32 32 H 1.09000 * 109.48606 * 298.41380 * 15 14 13 33 33 H 1.00898 * 110.99700 * 176.81317 * 16 15 14 34 34 H 1.08994 * 109.48840 * 299.35473 * 17 16 15 35 35 H 1.09002 * 109.48387 * 179.29086 * 17 16 15 36 36 H 1.09000 * 109.47207 * 61.25523 * 20 18 13 37 37 H 1.09001 * 109.47198 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47079 * 300.00279 * 21 20 18 39 39 H 1.08996 * 109.47411 * 59.99924 * 21 20 18 40 40 H 1.09008 * 109.47152 * 177.88672 * 22 20 18 41 41 H 1.08994 * 109.47516 * 297.88917 * 22 20 18 42 42 H 1.09002 * 109.47374 * 57.89105 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1452 6 1 4.1601 1.8016 0.6639 7 6 4.1206 0.9920 -1.3107 8 7 3.3654 0.5580 -2.2962 9 14 5.9799 0.9945 -1.4904 10 1 6.5804 0.1398 -0.4348 11 1 6.3489 0.4634 -2.8272 12 1 6.4887 2.3827 -1.3522 13 7 1.6692 2.0931 1.2638 14 6 1.8762 1.1876 2.4027 15 6 1.5551 1.9270 3.7037 16 7 0.1666 2.4068 3.6615 17 6 -0.0403 3.3122 2.5226 18 6 0.2808 2.5728 1.2217 19 1 -0.3939 1.7242 1.1092 20 6 0.1055 3.5248 0.0368 21 6 1.0740 4.7005 0.1796 22 6 -1.3319 4.0483 0.0116 23 1 -0.3633 -0.9638 -0.3567 24 1 -0.3633 0.1731 1.0129 25 1 -0.3633 0.7907 -0.6565 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.7738 0.2396 -3.1163 29 1 1.2195 0.3232 2.3041 30 1 2.9144 0.8560 2.4196 31 1 1.6799 1.2488 4.5478 32 1 2.2301 2.7755 3.8159 33 1 -0.0880 2.8536 4.5296 34 1 0.6163 4.1766 2.6213 35 1 -1.0785 3.6439 2.5058 36 1 0.3146 2.9924 -0.8910 37 1 0.9488 5.3790 -0.6643 38 1 0.8650 5.2329 1.1075 39 1 2.0981 4.3276 0.1976 40 1 -1.4468 4.7554 -0.8100 41 1 -2.0199 3.2145 -0.1277 42 1 -1.5532 4.5482 0.9546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704529650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = 9.175557 kcal Electronic energy + Delta-G solvation = -19449.499083 eV Core-core repulsion = 16850.508801 eV Total energy + Delta-G solvation = -2598.990282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41075 -35.15966 -34.78113 -32.17292 -30.45408 -28.99588 -27.40249 -26.56950 -24.41230 -23.67081 -22.38054 -20.29421 -19.57988 -17.82267 -16.34958 -16.24167 -14.86086 -14.63351 -14.43388 -14.03806 -13.69771 -13.46627 -13.14022 -12.86625 -12.36631 -12.21964 -11.79739 -11.61932 -11.37412 -11.30788 -11.08449 -10.83576 -10.71240 -10.60495 -10.47173 -10.29650 -10.12926 -10.09213 -9.83539 -9.53115 -9.19265 -8.79425 -8.25704 -8.09184 -6.91415 -5.95855 -3.97458 3.35109 3.39574 3.42574 4.45568 4.58758 4.96774 5.33967 5.37104 5.47953 5.61031 5.71104 5.74939 5.86721 5.94968 6.00424 6.06519 6.14322 6.20292 6.23083 6.33848 6.35026 6.40494 6.46265 6.48840 6.70036 6.71192 6.75981 6.92966 6.97915 7.06524 7.15220 7.30670 7.35287 7.57531 7.66607 7.74468 7.91499 8.28323 8.47757 8.69348 9.09146 9.66637 11.11865 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.009023 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.843762 B = 3102.370276 C = 3331.251560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.213 3.787 4 H 0.051 0.949 5 C -0.493 4.493 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.521 5.521 14 C 0.061 3.939 15 C 0.058 3.942 16 N -0.693 5.693 17 C 0.062 3.938 18 C 0.074 3.926 19 H 0.060 0.940 20 C -0.092 4.092 21 C -0.135 4.135 22 C -0.146 4.146 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.259 0.741 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.331 0.669 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 4.257 7.358 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.106 3.894 4 H 0.069 0.931 5 C -0.532 4.532 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.246 5.246 14 C -0.067 4.067 15 C -0.071 4.071 16 N -0.323 5.323 17 C -0.067 4.067 18 C -0.035 4.035 19 H 0.077 0.923 20 C -0.111 4.111 21 C -0.192 4.192 22 C -0.203 4.203 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.147 0.853 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.768 4.038 6.893 10.470 hybrid contribution 0.960 0.011 0.022 0.961 sum -5.808 4.048 6.915 9.896 Atomic orbital electron populations 1.22140 0.99417 0.99631 0.99686 1.22219 0.91835 1.02591 1.02176 1.19465 0.95438 0.88447 0.86002 0.93093 1.21073 0.91117 1.40744 1.00259 0.92363 1.24908 0.97754 0.95682 0.95894 1.69908 1.34663 1.43471 1.05364 0.86665 0.86126 0.78259 0.76922 1.20499 1.21541 1.20394 1.62482 1.18675 1.38700 1.04726 1.22047 1.01014 0.94195 0.89486 1.22073 0.88066 0.98477 0.98529 1.60527 1.23795 1.42159 1.05825 1.22168 0.99569 0.93925 0.91064 1.21940 0.92121 0.96808 0.92637 0.92263 1.21192 0.94058 0.96723 0.99094 1.21722 1.01658 0.96638 0.99223 1.21900 0.96968 1.00485 1.00992 0.95022 0.93629 0.93505 0.89684 0.94167 0.93087 0.94463 0.90418 0.91649 0.94990 0.85290 0.94580 0.91505 0.90090 0.94452 0.94013 0.90339 0.93154 0.93230 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.14 37.16 0.30 -2.74 16 2 C -0.15 -3.46 4.77 -26.73 -0.13 -3.59 16 3 C 0.21 5.09 1.60 -68.87 -0.11 4.98 16 4 H 0.05 1.34 5.23 -51.92 -0.27 1.07 16 5 C -0.49 -13.19 8.16 -34.45 -0.28 -13.47 16 6 H 0.06 1.58 7.71 -52.49 -0.40 1.18 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -25.18 11.74 55.43 0.65 -24.53 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -10.75 3.56 -219.94 -0.78 -11.53 16 14 C 0.06 1.18 4.35 -3.77 -0.02 1.17 16 15 C 0.06 0.93 6.72 -3.77 -0.03 0.90 16 16 N -0.69 -10.40 6.90 -113.63 -0.78 -11.18 16 17 C 0.06 0.97 5.29 -3.77 -0.02 0.95 16 18 C 0.07 1.33 1.19 -67.66 -0.08 1.25 16 19 H 0.06 1.14 4.06 -51.93 -0.21 0.92 16 20 C -0.09 -1.59 2.22 -90.62 -0.20 -1.79 16 21 C -0.14 -2.33 8.70 37.16 0.32 -2.01 16 22 C -0.15 -2.05 8.87 37.16 0.33 -1.72 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.88 5.26 -51.93 -0.27 0.60 16 25 H 0.05 0.94 6.97 -51.93 -0.36 0.58 16 26 H 0.08 2.24 6.43 -51.93 -0.33 1.90 16 27 H 0.04 0.92 6.04 -51.93 -0.31 0.61 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.04 0.75 5.27 -51.93 -0.27 0.47 16 30 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.33 4.09 8.90 -39.29 -0.35 3.74 16 34 H 0.04 0.58 6.38 -51.93 -0.33 0.25 16 35 H 0.07 0.94 6.46 -51.93 -0.34 0.60 16 36 H 0.08 1.63 5.70 -51.93 -0.30 1.34 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.65 6.42 -51.93 -0.33 0.32 16 39 H 0.08 1.60 7.54 -51.93 -0.39 1.21 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.65 6.33 -51.93 -0.33 0.33 16 LS Contribution 297.82 15.07 4.49 4.49 Total: -1.00 -27.18 297.82 -8.33 -35.51 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.87 Total: 5.52 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 0.00 Total: -14.58 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.92 Total: -47.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.18 -8.33 -35.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.682 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds