Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.09008 * 109.46609 * 305.86225 * 3 2 1 5 5 C 1.50693 * 109.47488 * 185.86537 * 3 2 1 6 6 H 1.08002 * 119.99571 * 245.69592 * 5 3 2 7 7 C 1.37870 * 120.00419 * 65.68743 * 5 3 2 8 8 N 1.31521 * 120.00275 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00317 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47144 * 60.00268 * 9 7 5 11 11 H 1.48504 * 109.47407 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46957 * 300.00232 * 9 7 5 13 13 N 1.46900 * 109.47597 * 65.85641 * 3 2 1 14 14 C 1.46960 * 110.99552 * 42.07026 * 13 3 2 15 15 C 1.53050 * 109.36481 * 176.81188 * 14 13 3 16 16 N 1.46960 * 109.36203 * 58.40051 * 15 14 13 17 17 C 1.46960 * 110.88205 * 300.67930 * 16 15 14 18 18 C 1.46961 * 111.00079 * 278.27590 * 13 3 2 19 19 H 1.08998 * 109.49060 * 63.19381 * 18 13 3 20 20 C 1.52996 * 109.48442 * 303.14953 * 18 13 3 21 21 C 1.52997 * 109.47452 * 301.25321 * 20 18 13 22 22 C 1.53001 * 109.46931 * 181.25264 * 20 18 13 23 23 H 1.09001 * 109.46942 * 159.69323 * 1 2 3 24 24 H 1.08991 * 109.47368 * 279.69661 * 1 2 3 25 25 H 1.09001 * 109.46853 * 39.70259 * 1 2 3 26 26 H 1.08997 * 109.47688 * 239.99283 * 2 1 3 27 27 H 1.09000 * 109.47215 * 119.99241 * 2 1 3 28 28 H 0.96993 * 120.00225 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.49166 * 296.77863 * 14 13 3 30 30 H 1.09001 * 109.48873 * 56.84130 * 14 13 3 31 31 H 1.08998 * 109.49254 * 178.36637 * 15 14 13 32 32 H 1.09000 * 109.48606 * 298.41380 * 15 14 13 33 33 H 1.00898 * 110.99700 * 176.81317 * 16 15 14 34 34 H 1.08994 * 109.48840 * 299.35473 * 17 16 15 35 35 H 1.09002 * 109.48387 * 179.29086 * 17 16 15 36 36 H 1.09000 * 109.47207 * 61.25523 * 20 18 13 37 37 H 1.09001 * 109.47198 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47079 * 300.00279 * 21 20 18 39 39 H 1.08996 * 109.47411 * 59.99924 * 21 20 18 40 40 H 1.09008 * 109.47152 * 177.88672 * 22 20 18 41 41 H 1.08994 * 109.47516 * 297.88917 * 22 20 18 42 42 H 1.09002 * 109.47374 * 57.89105 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1452 6 1 4.1601 1.8016 0.6639 7 6 4.1206 0.9920 -1.3107 8 7 3.3654 0.5580 -2.2962 9 14 5.9799 0.9945 -1.4904 10 1 6.5804 0.1398 -0.4348 11 1 6.3489 0.4634 -2.8272 12 1 6.4887 2.3827 -1.3522 13 7 1.6692 2.0931 1.2638 14 6 1.8762 1.1876 2.4027 15 6 1.5551 1.9270 3.7037 16 7 0.1666 2.4068 3.6615 17 6 -0.0403 3.3122 2.5226 18 6 0.2808 2.5728 1.2217 19 1 -0.3939 1.7242 1.1092 20 6 0.1055 3.5248 0.0368 21 6 1.0740 4.7005 0.1796 22 6 -1.3319 4.0483 0.0116 23 1 -0.3633 -0.9638 -0.3567 24 1 -0.3633 0.1731 1.0129 25 1 -0.3633 0.7907 -0.6565 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.7738 0.2396 -3.1163 29 1 1.2195 0.3232 2.3041 30 1 2.9144 0.8560 2.4196 31 1 1.6799 1.2488 4.5478 32 1 2.2301 2.7755 3.8159 33 1 -0.0880 2.8536 4.5296 34 1 0.6163 4.1766 2.6213 35 1 -1.0785 3.6439 2.5058 36 1 0.3146 2.9924 -0.8910 37 1 0.9488 5.3790 -0.6643 38 1 0.8650 5.2329 1.1075 39 1 2.0981 4.3276 0.1976 40 1 -1.4468 4.7554 -0.8100 41 1 -2.0199 3.2145 -0.1277 42 1 -1.5532 4.5482 0.9546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704529650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = -9.014081 kcal Electronic energy + Delta-G solvation = -19450.287845 eV Core-core repulsion = 16850.508801 eV Total energy + Delta-G solvation = -2599.779043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93050 -36.77350 -36.13901 -34.14898 -32.12702 -30.36051 -29.23654 -27.88583 -26.09273 -25.14213 -24.08015 -21.74883 -21.29475 -19.31983 -18.31256 -17.67466 -16.66544 -16.14668 -15.98325 -15.69737 -15.06521 -14.98674 -14.59479 -14.47254 -13.81645 -13.61929 -13.40821 -13.15726 -13.14072 -12.75725 -12.73369 -12.64435 -12.48520 -12.18883 -11.96435 -11.90653 -11.82691 -11.68661 -11.44199 -11.11384 -10.85054 -10.71989 -10.27847 -9.33159 -8.57674 -8.05402 -6.13304 1.41624 1.42365 1.49708 2.44998 3.22566 3.38461 3.45134 3.98347 4.15817 4.22942 4.37115 4.44936 4.47449 4.50158 4.55396 4.61407 4.68620 4.74097 4.79758 4.92087 4.97491 5.02511 5.08730 5.10451 5.15471 5.21184 5.25835 5.34505 5.38116 5.47996 5.59637 5.65729 5.70803 5.81518 5.84718 6.07799 6.35245 6.57365 6.72015 6.90401 7.01531 7.54688 9.00455 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.009023 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.843762 B = 3102.370276 C = 3331.251560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.222 3.778 4 H 0.025 0.975 5 C -0.506 4.506 6 H 0.047 0.953 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.061 3.939 15 C 0.068 3.932 16 N -0.692 5.692 17 C 0.068 3.932 18 C 0.073 3.927 19 H 0.051 0.949 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.137 4.137 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.258 0.742 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.352 0.648 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 5.174 9.009 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.115 3.885 4 H 0.042 0.958 5 C -0.544 4.544 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.062 4.062 16 N -0.324 5.324 17 C -0.061 4.061 18 C -0.036 4.036 19 H 0.069 0.931 20 C -0.110 4.110 21 C -0.184 4.184 22 C -0.195 4.195 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.171 0.829 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.955 4.966 8.573 12.706 hybrid contribution 1.320 -0.268 -0.478 1.430 sum -6.635 4.699 8.095 11.473 Atomic orbital electron populations 1.21961 0.96754 1.00194 1.00402 1.22047 0.94163 1.01695 1.00199 1.19142 0.93746 0.88618 0.87005 0.95765 1.21363 0.92842 1.40301 0.99935 0.93495 1.25585 1.01632 0.95569 0.95740 1.70032 1.36082 1.44269 1.05637 0.85760 0.81542 0.78248 0.76916 1.19976 1.21216 1.20109 1.62398 1.20854 1.38405 1.03561 1.22031 0.99562 0.94343 0.90843 1.21942 0.88724 0.98463 0.97068 1.60458 1.22793 1.42401 1.06780 1.22109 1.00939 0.93303 0.89731 1.22020 0.90073 0.96885 0.94616 0.93105 1.21142 0.96456 0.96316 0.97127 1.21616 0.99262 0.96803 1.00721 1.21824 0.94200 1.00888 1.02574 0.93757 0.92352 0.93952 0.93136 0.94466 0.93276 0.95260 0.92671 0.89254 0.95384 0.82893 0.94847 0.88935 0.93820 0.93478 0.91966 0.94287 0.92162 0.92854 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.14 71.98 0.59 -4.86 16 2 C -0.14 -6.77 4.77 30.59 0.15 -6.62 16 3 C 0.22 11.00 1.60 44.17 0.07 11.07 16 4 H 0.02 1.35 5.23 -2.38 -0.01 1.34 16 5 C -0.51 -28.00 8.16 25.60 0.21 -27.79 16 6 H 0.05 2.64 7.71 -2.91 -0.02 2.62 16 7 C 0.01 0.72 5.30 84.65 0.45 1.17 16 8 N -0.92 -53.49 11.74 21.45 0.25 -53.24 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.53 -21.95 3.56 -849.77 -3.03 -24.98 16 14 C 0.06 2.33 4.35 86.31 0.38 2.71 16 15 C 0.07 2.02 6.72 86.31 0.58 2.60 16 16 N -0.69 -18.44 6.90 -513.43 -3.54 -21.99 16 17 C 0.07 1.93 5.29 86.31 0.46 2.38 16 18 C 0.07 2.54 1.19 44.92 0.05 2.59 16 19 H 0.05 1.88 4.06 -2.39 -0.01 1.87 16 20 C -0.09 -3.11 2.22 -10.80 -0.02 -3.14 16 21 C -0.13 -4.30 8.70 71.98 0.63 -3.67 16 22 C -0.14 -3.51 8.87 71.98 0.64 -2.87 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.18 5.26 -2.39 -0.01 2.17 16 25 H 0.04 1.71 6.97 -2.39 -0.02 1.69 16 26 H 0.05 2.76 6.43 -2.39 -0.02 2.74 16 27 H 0.04 1.75 6.04 -2.39 -0.01 1.74 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.03 1.16 5.27 -2.39 -0.01 1.15 16 30 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.35 7.22 8.90 -89.70 -0.80 6.43 16 34 H 0.03 0.98 6.38 -2.39 -0.02 0.96 16 35 H 0.09 2.18 6.46 -2.39 -0.02 2.16 16 36 H 0.04 1.82 5.70 -2.39 -0.01 1.80 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.82 6.42 -2.39 -0.02 1.81 16 39 H 0.04 1.61 7.54 -2.39 -0.02 1.60 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.55 6.33 -2.39 -0.02 1.54 16 Total: -1.00 -60.11 297.82 0.08 -60.03 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.21 Total: 19.95 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 4.17 Total: -26.43 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -6.32 Total: -100.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -60.11 0.08 -60.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -60.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds