Wall clock time and date at job start Mon Mar 30 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 H 1.09007 * 109.47481 * 56.24844 * 3 2 1 5 5 C 1.50692 * 109.47356 * 176.25282 * 3 2 1 6 6 H 1.08008 * 120.00282 * 117.31565 * 5 3 2 7 7 C 1.37882 * 120.00161 * 297.31933 * 5 3 2 8 8 N 1.31510 * 119.99953 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99588 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47273 * 90.00456 * 9 7 5 11 11 H 1.48507 * 109.47183 * 209.99961 * 9 7 5 12 12 H 1.48497 * 109.47439 * 330.00172 * 9 7 5 13 13 N 1.46905 * 109.47081 * 296.25339 * 3 2 1 14 14 C 1.46958 * 110.99773 * 322.21451 * 13 3 2 15 15 C 1.53051 * 109.36230 * 183.18848 * 14 13 3 16 16 N 1.46953 * 109.36756 * 301.59575 * 15 14 13 17 17 C 1.46961 * 110.87878 * 59.31939 * 16 15 14 18 18 C 1.46957 * 111.00016 * 86.00956 * 13 3 2 19 19 H 1.08993 * 109.49096 * 296.77906 * 18 13 3 20 20 C 1.53006 * 109.48661 * 56.84967 * 18 13 3 21 21 C 1.52994 * 109.47281 * 55.31978 * 20 18 13 22 22 C 1.53001 * 109.47094 * 175.32218 * 20 18 13 23 23 H 1.09001 * 109.46800 * 78.56052 * 1 2 3 24 24 H 1.09000 * 109.46692 * 198.55437 * 1 2 3 25 25 H 1.08995 * 109.47291 * 318.55808 * 1 2 3 26 26 H 1.09002 * 109.47049 * 119.99067 * 2 1 3 27 27 H 1.08995 * 109.47682 * 239.99947 * 2 1 3 28 28 H 0.97000 * 119.99787 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.48684 * 303.15170 * 14 13 3 30 30 H 1.08992 * 109.49162 * 63.21662 * 14 13 3 31 31 H 1.09001 * 109.49033 * 61.56585 * 15 14 13 32 32 H 1.09005 * 109.48962 * 181.60491 * 15 14 13 33 33 H 1.00899 * 110.99839 * 295.45581 * 16 15 14 34 34 H 1.09003 * 109.48550 * 60.64890 * 17 16 15 35 35 H 1.09000 * 109.49087 * 180.69149 * 17 16 15 36 36 H 1.09006 * 109.46793 * 295.31714 * 20 18 13 37 37 H 1.08998 * 109.47117 * 60.00335 * 21 20 18 38 38 H 1.09001 * 109.47250 * 180.02562 * 21 20 18 39 39 H 1.09000 * 109.47158 * 300.00195 * 21 20 18 40 40 H 1.09004 * 109.47328 * 55.83277 * 22 20 18 41 41 H 1.08993 * 109.47440 * 175.83616 * 22 20 18 42 42 H 1.09001 * 109.47049 * 295.84219 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9754 0.8545 5 6 3.5441 1.4436 0.0928 6 1 4.1346 1.8550 -0.7125 7 6 4.1665 0.9193 1.2059 8 7 5.4791 0.9208 1.2871 9 14 3.1452 0.2084 2.5990 10 1 2.9129 -1.2378 2.3544 11 1 3.8701 0.3829 3.8833 12 1 1.8407 0.9147 2.6669 13 7 1.6256 2.1084 -1.2422 14 6 1.6964 1.1852 -2.3834 15 6 1.3345 1.9364 -3.6669 16 7 -0.0146 2.5041 -3.5354 17 6 -0.0854 3.4272 -2.3941 18 6 0.2765 2.6760 -1.1106 19 1 -0.4414 1.8729 -0.9447 20 6 0.2433 3.6440 0.0739 21 6 1.3301 4.7058 -0.1046 22 6 -1.1266 4.3223 0.1400 23 1 -0.3633 0.2038 -1.0073 24 1 -0.3633 -0.9743 0.3270 25 1 -0.3633 0.7703 0.6801 26 1 1.8934 -0.5137 0.8901 27 1 1.8935 -0.5138 -0.8899 28 1 5.9169 0.5523 2.0703 29 1 2.7079 0.7879 -2.4675 30 1 0.9947 0.3651 -2.2319 31 1 2.0524 2.7396 -3.8329 32 1 1.3586 1.2470 -4.5109 33 1 -0.7073 1.7750 -3.4543 34 1 0.6164 4.2473 -2.5456 35 1 -1.0968 3.8249 -2.3102 36 1 0.4211 3.0936 0.9979 37 1 1.1522 5.2561 -1.0285 38 1 1.3068 5.3951 0.7395 39 1 2.3060 4.2226 -0.1516 40 1 -1.9062 3.5623 0.1927 41 1 -1.1761 4.9556 1.0256 42 1 -1.2734 4.9320 -0.7515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704529651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:10 Heat of formation + Delta-G solvation = 14.010738 kcal Electronic energy + Delta-G solvation = -19575.620093 eV Core-core repulsion = 16976.839481 eV Total energy + Delta-G solvation = -2598.780612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80611 -35.43901 -34.96684 -32.21420 -30.82839 -29.18885 -27.92121 -26.69064 -24.32810 -23.76903 -22.44766 -20.82382 -19.90790 -18.32816 -16.78195 -15.88426 -15.44573 -14.77655 -14.69750 -14.20516 -13.99155 -13.32258 -13.02546 -12.85945 -12.56302 -12.48555 -12.28667 -11.87667 -11.85604 -11.50514 -11.38670 -11.11903 -10.89004 -10.68582 -10.57543 -10.44639 -10.36115 -10.29901 -10.04416 -9.68346 -9.48953 -9.01778 -8.55531 -8.03984 -7.18101 -6.05802 -4.02152 3.23142 3.33726 3.35554 4.38752 4.54725 4.66217 5.17990 5.25721 5.28645 5.50737 5.53426 5.59531 5.67869 5.71953 5.76204 5.79914 5.88768 5.92070 5.97594 6.00423 6.10416 6.25801 6.28109 6.34200 6.38966 6.47273 6.51206 6.58284 6.59068 6.71672 6.76609 6.88824 7.12435 7.14601 7.27804 7.60614 7.70972 7.96385 8.10681 8.69174 9.05642 9.57312 11.07561 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.010096 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.347114 B = 2772.778636 C = 3038.799665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.163 4.163 3 C 0.182 3.818 4 H 0.045 0.955 5 C -0.492 4.492 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.268 1.268 13 N -0.503 5.503 14 C 0.020 3.980 15 C 0.057 3.943 16 N -0.689 5.689 17 C 0.062 3.938 18 C 0.037 3.963 19 H 0.044 0.956 20 C -0.088 4.088 21 C -0.138 4.138 22 C -0.146 4.146 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.330 0.670 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 2.637 -4.669 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.202 4.202 3 C 0.074 3.926 4 H 0.063 0.937 5 C -0.531 4.531 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.708 3.292 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.193 1.193 13 N -0.227 5.227 14 C -0.110 4.110 15 C -0.073 4.073 16 N -0.316 5.316 17 C -0.067 4.067 18 C -0.073 4.073 19 H 0.062 0.938 20 C -0.108 4.108 21 C -0.195 4.195 22 C -0.204 4.204 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.786 3.501 -5.140 13.326 hybrid contribution -0.958 -1.974 1.924 2.919 sum -12.744 1.527 -3.215 13.232 Atomic orbital electron populations 1.22150 0.98368 1.00305 1.00495 1.22662 0.93125 1.02720 1.01716 1.19964 0.96806 0.87557 0.88232 0.93745 1.20947 0.88639 1.38566 1.04910 0.90135 1.24903 0.94645 0.95843 0.97795 1.69877 1.07912 1.46567 1.29543 0.87003 0.80624 0.79500 0.82105 1.20791 1.22321 1.19273 1.62304 1.21266 1.34630 1.04480 1.22819 1.02259 0.94196 0.91712 1.22137 0.90313 0.98643 0.96202 1.60875 1.05909 1.21757 1.43074 1.22242 1.01043 0.95964 0.87495 1.22628 0.92053 0.96706 0.95914 0.93798 1.21130 0.94824 0.96652 0.98148 1.21742 1.00811 0.97408 0.99543 1.21901 0.96953 1.00127 1.01398 0.93117 0.94178 0.93155 0.93002 0.91692 0.92749 0.89714 0.95242 0.90360 0.91330 0.85437 0.90117 0.91238 0.91128 0.93534 0.94378 0.89750 0.93459 0.93032 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.08 37.16 0.30 -2.41 16 2 C -0.16 -3.43 4.42 -26.73 -0.12 -3.54 16 3 C 0.18 4.07 0.98 -68.87 -0.07 4.00 16 4 H 0.04 1.05 4.15 -51.92 -0.22 0.83 16 5 C -0.49 -13.35 8.97 -34.44 -0.31 -13.66 16 6 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 7 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.88 21.66 24.53 -169.99 -4.17 17.49 16 10 H -0.28 -6.83 6.84 56.52 0.39 -6.44 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.33 6.46 56.52 0.37 -5.96 16 13 N -0.50 -9.65 3.45 -219.94 -0.76 -10.41 16 14 C 0.02 0.35 4.20 -3.77 -0.02 0.33 16 15 C 0.06 0.85 6.72 -3.77 -0.03 0.83 16 16 N -0.69 -9.64 6.91 -113.63 -0.79 -10.43 16 17 C 0.06 0.89 5.26 -3.76 -0.02 0.87 16 18 C 0.04 0.60 1.35 -67.65 -0.09 0.51 16 19 H 0.04 0.72 4.31 -51.93 -0.22 0.49 16 20 C -0.09 -1.41 2.31 -90.62 -0.21 -1.62 16 21 C -0.14 -2.29 8.72 37.15 0.32 -1.96 16 22 C -0.15 -1.86 8.58 37.16 0.32 -1.54 16 23 H 0.05 0.81 5.02 -51.93 -0.26 0.55 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.87 7.37 -51.93 -0.38 0.49 16 26 H 0.05 1.18 3.60 -51.93 -0.19 1.00 16 27 H 0.06 1.36 6.19 -51.93 -0.32 1.03 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.08 1.68 7.76 -51.93 -0.40 1.27 16 30 H 0.03 0.51 4.84 -51.93 -0.25 0.25 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.33 4.23 8.89 -39.29 -0.35 3.89 16 34 H 0.08 1.26 6.48 -51.93 -0.34 0.92 16 35 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 36 H 0.07 1.29 6.13 -51.93 -0.32 0.97 16 37 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.71 7.21 -51.93 -0.37 1.33 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 LS Contribution 291.17 15.07 4.39 4.39 Total: -1.00 -28.30 291.17 -7.36 -35.66 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.79 Total: 6.08 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.01 Total: -16.33 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.77 Total: -47.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.17 Total: 17.49 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.30 -7.36 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.667 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds