Wall clock time and date at job start Mon Mar 30 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 H 1.09007 * 109.47481 * 56.24844 * 3 2 1 5 5 C 1.50692 * 109.47356 * 176.25282 * 3 2 1 6 6 H 1.08008 * 120.00282 * 117.31565 * 5 3 2 7 7 C 1.37882 * 120.00161 * 297.31933 * 5 3 2 8 8 N 1.31510 * 119.99953 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99588 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47273 * 90.00456 * 9 7 5 11 11 H 1.48507 * 109.47183 * 209.99961 * 9 7 5 12 12 H 1.48497 * 109.47439 * 330.00172 * 9 7 5 13 13 N 1.46905 * 109.47081 * 296.25339 * 3 2 1 14 14 C 1.46958 * 110.99773 * 322.21451 * 13 3 2 15 15 C 1.53051 * 109.36230 * 183.18848 * 14 13 3 16 16 N 1.46953 * 109.36756 * 301.59575 * 15 14 13 17 17 C 1.46961 * 110.87878 * 59.31939 * 16 15 14 18 18 C 1.46957 * 111.00016 * 86.00956 * 13 3 2 19 19 H 1.08993 * 109.49096 * 296.77906 * 18 13 3 20 20 C 1.53006 * 109.48661 * 56.84967 * 18 13 3 21 21 C 1.52994 * 109.47281 * 55.31978 * 20 18 13 22 22 C 1.53001 * 109.47094 * 175.32218 * 20 18 13 23 23 H 1.09001 * 109.46800 * 78.56052 * 1 2 3 24 24 H 1.09000 * 109.46692 * 198.55437 * 1 2 3 25 25 H 1.08995 * 109.47291 * 318.55808 * 1 2 3 26 26 H 1.09002 * 109.47049 * 119.99067 * 2 1 3 27 27 H 1.08995 * 109.47682 * 239.99947 * 2 1 3 28 28 H 0.97000 * 119.99787 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.48684 * 303.15170 * 14 13 3 30 30 H 1.08992 * 109.49162 * 63.21662 * 14 13 3 31 31 H 1.09001 * 109.49033 * 61.56585 * 15 14 13 32 32 H 1.09005 * 109.48962 * 181.60491 * 15 14 13 33 33 H 1.00899 * 110.99839 * 295.45581 * 16 15 14 34 34 H 1.09003 * 109.48550 * 60.64890 * 17 16 15 35 35 H 1.09000 * 109.49087 * 180.69149 * 17 16 15 36 36 H 1.09006 * 109.46793 * 295.31714 * 20 18 13 37 37 H 1.08998 * 109.47117 * 60.00335 * 21 20 18 38 38 H 1.09001 * 109.47250 * 180.02562 * 21 20 18 39 39 H 1.09000 * 109.47158 * 300.00195 * 21 20 18 40 40 H 1.09004 * 109.47328 * 55.83277 * 22 20 18 41 41 H 1.08993 * 109.47440 * 175.83616 * 22 20 18 42 42 H 1.09001 * 109.47049 * 295.84219 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9754 0.8545 5 6 3.5441 1.4436 0.0928 6 1 4.1346 1.8550 -0.7125 7 6 4.1665 0.9193 1.2059 8 7 5.4791 0.9208 1.2871 9 14 3.1452 0.2084 2.5990 10 1 2.9129 -1.2378 2.3544 11 1 3.8701 0.3829 3.8833 12 1 1.8407 0.9147 2.6669 13 7 1.6256 2.1084 -1.2422 14 6 1.6964 1.1852 -2.3834 15 6 1.3345 1.9364 -3.6669 16 7 -0.0146 2.5041 -3.5354 17 6 -0.0854 3.4272 -2.3941 18 6 0.2765 2.6760 -1.1106 19 1 -0.4414 1.8729 -0.9447 20 6 0.2433 3.6440 0.0739 21 6 1.3301 4.7058 -0.1046 22 6 -1.1266 4.3223 0.1400 23 1 -0.3633 0.2038 -1.0073 24 1 -0.3633 -0.9743 0.3270 25 1 -0.3633 0.7703 0.6801 26 1 1.8934 -0.5137 0.8901 27 1 1.8935 -0.5138 -0.8899 28 1 5.9169 0.5523 2.0703 29 1 2.7079 0.7879 -2.4675 30 1 0.9947 0.3651 -2.2319 31 1 2.0524 2.7396 -3.8329 32 1 1.3586 1.2470 -4.5109 33 1 -0.7073 1.7750 -3.4543 34 1 0.6164 4.2473 -2.5456 35 1 -1.0968 3.8249 -2.3102 36 1 0.4211 3.0936 0.9979 37 1 1.1522 5.2561 -1.0285 38 1 1.3068 5.3951 0.7395 39 1 2.3060 4.2226 -0.1516 40 1 -1.9062 3.5623 0.1927 41 1 -1.1761 4.9556 1.0256 42 1 -1.2734 4.9320 -0.7515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704529651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:10 Heat of formation + Delta-G solvation = -6.997241 kcal Electronic energy + Delta-G solvation = -19576.531067 eV Core-core repulsion = 16976.839481 eV Total energy + Delta-G solvation = -2599.691587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21907 -36.96660 -36.20755 -34.30049 -32.29538 -30.45469 -29.71817 -27.89902 -25.85202 -25.12687 -24.08137 -22.17466 -21.51197 -19.68549 -18.78362 -17.41518 -16.95213 -16.28874 -16.04783 -15.77778 -15.41545 -14.81227 -14.57247 -14.45878 -14.02187 -13.78098 -13.56729 -13.45631 -13.41293 -12.85612 -12.71015 -12.69247 -12.52864 -12.26045 -12.00221 -11.85111 -11.77795 -11.68710 -11.49519 -11.44029 -11.12969 -10.89635 -10.68638 -9.29243 -8.66917 -8.26909 -6.26387 1.24664 1.29965 1.39144 2.29703 3.05419 3.19342 3.44704 3.96188 4.03988 4.10893 4.23173 4.25531 4.32318 4.37205 4.43215 4.50736 4.58110 4.62918 4.71192 4.80207 4.86383 4.91617 4.98500 5.00187 5.06075 5.11268 5.13961 5.18764 5.21586 5.30752 5.37523 5.49842 5.56470 5.68433 5.72306 6.03628 6.11196 6.53583 6.58633 6.78513 6.80718 7.37239 8.90584 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.010096 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.347114 B = 2772.778636 C = 3038.799665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.163 4.163 3 C 0.191 3.809 4 H 0.038 0.962 5 C -0.487 4.487 6 H 0.032 0.968 7 C 0.011 3.989 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.299 1.299 12 H -0.249 1.249 13 N -0.520 5.520 14 C 0.023 3.977 15 C 0.067 3.933 16 N -0.681 5.681 17 C 0.069 3.931 18 C 0.039 3.961 19 H 0.054 0.946 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.138 4.138 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.343 0.657 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 2.616 -5.006 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.083 3.917 4 H 0.056 0.944 5 C -0.526 4.526 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.227 1.227 12 H -0.173 1.173 13 N -0.244 5.244 14 C -0.107 4.107 15 C -0.063 4.063 16 N -0.309 5.309 17 C -0.061 4.061 18 C -0.070 4.070 19 H 0.072 0.928 20 C -0.109 4.109 21 C -0.189 4.189 22 C -0.195 4.195 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.702 3.483 -5.500 16.998 hybrid contribution 0.320 -1.895 1.929 2.723 sum -15.382 1.588 -3.571 15.871 Atomic orbital electron populations 1.22040 0.94840 1.01662 1.01779 1.22540 0.96255 1.00798 1.00624 1.19647 0.93330 0.88992 0.89744 0.94409 1.21217 0.91445 1.36805 1.03132 0.94996 1.25702 0.95579 0.96640 1.00639 1.70043 1.09967 1.48716 1.30601 0.85965 0.79611 0.79270 0.78362 1.19731 1.22714 1.17271 1.62156 1.24006 1.34788 1.03484 1.22800 1.00607 0.94700 0.92571 1.22028 0.90690 0.98230 0.95336 1.60850 1.05320 1.22018 1.42676 1.22235 1.02190 0.95356 0.86339 1.22743 0.90092 0.96993 0.97222 0.92815 1.21137 0.96662 0.96285 0.96821 1.21644 0.98779 0.97689 1.00765 1.21825 0.94619 1.00484 1.02586 0.91384 0.92171 0.92915 0.94738 0.92222 0.92850 0.93215 0.94090 0.92026 0.89005 0.83968 0.91482 0.88354 0.93662 0.92045 0.93454 0.94376 0.92108 0.92314 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 8.08 71.98 0.58 -3.98 16 2 C -0.16 -6.65 4.42 30.60 0.14 -6.52 16 3 C 0.19 8.61 0.98 44.16 0.04 8.66 16 4 H 0.04 1.78 4.15 -2.38 -0.01 1.77 16 5 C -0.49 -27.77 8.97 25.60 0.23 -27.54 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.63 5.45 84.66 0.46 1.09 16 8 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.94 45.47 24.53 68.60 1.68 47.16 16 10 H -0.27 -12.59 6.84 99.48 0.68 -11.91 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 12 H -0.25 -11.14 6.46 99.48 0.64 -10.49 16 13 N -0.52 -19.93 3.45 -849.77 -2.93 -22.86 16 14 C 0.02 0.80 4.20 86.31 0.36 1.16 16 15 C 0.07 1.91 6.72 86.31 0.58 2.49 16 16 N -0.68 -16.74 6.91 -513.42 -3.55 -20.29 16 17 C 0.07 1.74 5.26 86.31 0.45 2.20 16 18 C 0.04 1.18 1.35 44.92 0.06 1.24 16 19 H 0.05 1.54 4.31 -2.39 -0.01 1.53 16 20 C -0.09 -2.69 2.31 -10.79 -0.02 -2.72 16 21 C -0.13 -4.30 8.72 71.98 0.63 -3.68 16 22 C -0.14 -2.96 8.58 71.98 0.62 -2.34 16 23 H 0.07 1.88 5.02 -2.39 -0.01 1.86 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.63 7.37 -2.39 -0.02 1.61 16 26 H 0.03 1.52 3.60 -2.39 -0.01 1.51 16 27 H 0.06 2.46 6.19 -2.39 -0.01 2.44 16 28 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.05 2.05 7.76 -2.39 -0.02 2.03 16 30 H 0.04 1.32 4.84 -2.39 -0.01 1.31 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.34 7.25 8.89 -89.70 -0.80 6.46 16 34 H 0.07 1.93 6.48 -2.39 -0.02 1.91 16 35 H 0.10 2.01 6.55 -2.39 -0.02 1.99 16 36 H 0.05 1.59 6.13 -2.38 -0.01 1.58 16 37 H 0.06 1.79 6.52 -2.39 -0.02 1.77 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 1.59 7.21 -2.39 -0.02 1.57 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.33 6.64 -2.39 -0.02 1.32 16 Total: -1.00 -64.89 291.17 -0.25 -65.13 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.13 Total: 20.89 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.13 Total: -29.95 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -6.18 Total: -103.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.68 Total: 47.16 kcal Total: -64.89 -0.25 -65.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.137 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds