Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 H 1.09002 * 109.46921 * 54.99471 * 3 2 1 5 5 C 1.50694 * 109.47409 * 174.99945 * 3 2 1 6 6 H 1.07995 * 120.00301 * 119.99740 * 5 3 2 7 7 C 1.37882 * 119.99668 * 299.99781 * 5 3 2 8 8 N 1.31511 * 120.00229 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46967 * 90.00097 * 9 7 5 11 11 H 1.48504 * 109.46855 * 210.00340 * 9 7 5 12 12 H 1.48501 * 109.46791 * 329.99910 * 9 7 5 13 13 N 1.46898 * 109.46983 * 295.00105 * 3 2 1 14 14 C 1.46965 * 111.01617 * 296.42257 * 13 3 2 15 15 C 1.53050 * 109.38211 * 176.83339 * 14 13 3 16 16 N 1.46957 * 109.36281 * 58.39008 * 15 14 13 17 17 C 1.46951 * 110.88459 * 300.68102 * 16 15 14 18 18 C 1.46960 * 111.00005 * 172.61785 * 13 3 2 19 19 H 1.08996 * 109.48813 * 63.19240 * 18 13 3 20 20 C 1.52998 * 109.48464 * 303.14717 * 18 13 3 21 21 C 1.52995 * 109.47569 * 299.66727 * 20 18 13 22 22 C 1.53007 * 109.47030 * 179.66294 * 20 18 13 23 23 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46962 * 300.00041 * 1 2 3 25 25 H 1.08998 * 109.46571 * 60.00159 * 1 2 3 26 26 H 1.08997 * 109.46962 * 239.99959 * 2 1 3 27 27 H 1.08998 * 109.46571 * 119.99841 * 2 1 3 28 28 H 0.96995 * 120.00236 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.48762 * 56.85746 * 14 13 3 30 30 H 1.08995 * 109.48785 * 296.81333 * 14 13 3 31 31 H 1.09004 * 109.49027 * 298.42410 * 15 14 13 32 32 H 1.09001 * 109.48836 * 178.36261 * 15 14 13 33 33 H 1.00905 * 110.99723 * 176.80735 * 16 15 14 34 34 H 1.08999 * 109.48457 * 299.35044 * 17 16 15 35 35 H 1.09003 * 109.50727 * 179.30177 * 17 16 15 36 36 H 1.08999 * 109.46989 * 59.66843 * 20 18 13 37 37 H 1.09002 * 109.46779 * 299.99630 * 21 20 18 38 38 H 1.08994 * 109.47078 * 60.00148 * 21 20 18 39 39 H 1.09007 * 109.47320 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.46914 * 297.65141 * 22 20 18 41 41 H 1.08997 * 109.46854 * 57.65166 * 22 20 18 42 42 H 1.08998 * 109.47309 * 177.65360 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3813 10 1 6.4428 2.1129 2.0838 11 1 6.4390 -0.3111 2.1548 12 1 6.6131 0.8394 0.0271 13 7 1.6515 2.0992 -1.2552 14 6 2.2888 1.4497 -2.4092 15 6 1.7981 2.1110 -3.6993 16 7 2.1168 3.5452 -3.6634 17 6 1.4791 4.1948 -2.5098 18 6 1.9698 3.5335 -1.2197 19 1 3.0483 3.6645 -1.1313 20 6 1.2768 4.1805 -0.0189 21 6 -0.2375 4.0046 -0.1482 22 6 1.6152 5.6721 0.0225 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0611 2.9499 29 1 2.0277 0.3915 -2.4209 30 1 3.3710 1.5565 -2.3347 31 1 0.7195 1.9802 -3.7875 32 1 2.2918 1.6500 -4.5548 33 1 1.8502 3.9965 -4.5256 34 1 0.3970 4.0877 -2.5845 35 1 1.7398 5.2531 -2.4980 36 1 1.6208 3.7043 0.8992 37 1 -0.5815 4.4809 -1.0663 38 1 -0.4786 2.9420 -0.1776 39 1 -0.7313 4.4660 0.7071 40 1 2.6897 5.7972 0.1566 41 1 1.3088 6.1403 -0.9129 42 1 1.0884 6.1413 0.8534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704529652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = -2.651044 kcal Electronic energy + Delta-G solvation = -19397.316660 eV Core-core repulsion = 16797.813538 eV Total energy + Delta-G solvation = -2599.503121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.09363 -35.09121 -34.73546 -32.05776 -30.78452 -28.98990 -26.78780 -26.66644 -24.40795 -23.48760 -22.44174 -20.21555 -19.35886 -18.07189 -16.26393 -16.00157 -14.81787 -14.70431 -14.36195 -13.88176 -13.57754 -13.29004 -13.07572 -12.77858 -12.54768 -12.10790 -11.83206 -11.80068 -11.40569 -11.23751 -11.04472 -10.81076 -10.69818 -10.52464 -10.48052 -10.30915 -10.08583 -9.83502 -9.59215 -9.45510 -9.25033 -8.94683 -8.27747 -8.03141 -7.01588 -5.93814 -4.06312 3.29566 3.36851 3.40906 4.44042 4.63660 5.02470 5.29989 5.43264 5.54721 5.66443 5.75792 5.79576 5.92178 6.02250 6.06194 6.10773 6.19782 6.33700 6.35803 6.40478 6.47175 6.48946 6.53933 6.66666 6.74043 6.86040 6.97529 7.01367 7.07847 7.15444 7.21887 7.36298 7.46711 7.68984 7.71397 7.81308 8.07058 8.23147 8.40651 8.54566 9.04643 9.60892 11.04808 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.009679 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.415967 B = 2892.276401 C = 2954.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.211 3.789 4 H 0.046 0.954 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.061 3.939 15 C 0.060 3.940 16 N -0.692 5.692 17 C 0.062 3.938 18 C 0.102 3.898 19 H 0.049 0.951 20 C -0.090 4.090 21 C -0.136 4.136 22 C -0.144 4.144 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.330 0.670 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 5.580 -6.946 10.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.105 3.895 4 H 0.064 0.936 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.070 4.070 16 N -0.322 5.322 17 C -0.067 4.067 18 C -0.007 4.007 19 H 0.067 0.933 20 C -0.110 4.110 21 C -0.193 4.193 22 C -0.202 4.202 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.247 5.326 -6.496 9.904 hybrid contribution 1.111 0.038 -0.047 1.113 sum -4.136 5.364 -6.543 9.417 Atomic orbital electron populations 1.21713 0.99000 0.98302 1.00433 1.21622 0.92111 0.99487 1.01857 1.19336 0.92978 0.90917 0.86291 0.93584 1.21764 0.93022 1.37622 1.05311 0.92558 1.24884 0.97563 0.95143 0.95771 1.69868 1.34650 1.38598 1.09443 0.86727 0.86583 0.77438 0.78053 1.20815 1.21316 1.20065 1.62607 1.57146 1.00987 1.04481 1.21964 0.98076 0.97639 0.89076 1.22069 0.97927 0.88262 0.98728 1.60483 1.62852 1.03511 1.05349 1.22193 0.96225 0.97280 0.91044 1.21339 0.98036 0.89431 0.91916 0.93268 1.21137 0.95658 0.94539 0.99618 1.21758 0.95389 1.02681 0.99448 1.21871 1.01165 0.96524 1.00654 0.95738 0.94262 0.93492 0.95029 0.89029 0.93023 0.91080 0.93607 0.95395 0.91736 0.85394 0.94798 0.91509 0.89653 0.93863 0.91264 0.94405 0.92958 0.93271 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.39 16 2 C -0.11 -2.62 5.12 -26.73 -0.14 -2.76 16 3 C 0.21 5.01 1.45 -68.87 -0.10 4.91 16 4 H 0.05 1.21 5.84 -51.93 -0.30 0.90 16 5 C -0.54 -14.21 7.14 -34.44 -0.25 -14.45 16 6 H 0.06 1.54 5.80 -52.49 -0.30 1.24 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -10.78 3.20 -219.95 -0.70 -11.48 16 14 C 0.06 1.21 4.97 -3.76 -0.02 1.19 16 15 C 0.06 0.97 6.72 -3.77 -0.03 0.94 16 16 N -0.69 -10.88 6.90 -113.64 -0.78 -11.67 16 17 C 0.06 1.00 5.29 -3.77 -0.02 0.98 16 18 C 0.10 1.95 1.51 -67.65 -0.10 1.85 16 19 H 0.05 1.11 7.04 -51.93 -0.37 0.74 16 20 C -0.09 -1.61 2.31 -90.62 -0.21 -1.82 16 21 C -0.14 -2.20 8.68 37.16 0.32 -1.88 16 22 C -0.14 -2.17 8.92 37.16 0.33 -1.84 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.91 7.75 -51.93 -0.40 0.50 16 26 H 0.03 0.73 6.19 -51.93 -0.32 0.41 16 27 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.07 1.42 6.15 -51.93 -0.32 1.10 16 30 H 0.05 1.03 6.38 -51.93 -0.33 0.70 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.33 4.26 8.90 -39.29 -0.35 3.91 16 34 H 0.03 0.54 6.34 -51.93 -0.33 0.21 16 35 H 0.07 0.99 6.48 -51.93 -0.34 0.65 16 36 H 0.09 1.81 6.18 -51.93 -0.32 1.49 16 37 H 0.04 0.64 6.39 -51.93 -0.33 0.31 16 38 H 0.07 1.25 7.61 -51.93 -0.40 0.85 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -26.87 304.12 -8.38 -35.25 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.14 Total: 4.62 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.86 Total: -47.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.87 -8.38 -35.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -26.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds