Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 H 1.09002 * 109.46921 * 54.99471 * 3 2 1 5 5 C 1.50694 * 109.47409 * 174.99945 * 3 2 1 6 6 H 1.07995 * 120.00301 * 119.99740 * 5 3 2 7 7 C 1.37882 * 119.99668 * 299.99781 * 5 3 2 8 8 N 1.31511 * 120.00229 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46967 * 90.00097 * 9 7 5 11 11 H 1.48504 * 109.46855 * 210.00340 * 9 7 5 12 12 H 1.48501 * 109.46791 * 329.99910 * 9 7 5 13 13 N 1.46898 * 109.46983 * 295.00105 * 3 2 1 14 14 C 1.46965 * 111.01617 * 296.42257 * 13 3 2 15 15 C 1.53050 * 109.38211 * 176.83339 * 14 13 3 16 16 N 1.46957 * 109.36281 * 58.39008 * 15 14 13 17 17 C 1.46951 * 110.88459 * 300.68102 * 16 15 14 18 18 C 1.46960 * 111.00005 * 172.61785 * 13 3 2 19 19 H 1.08996 * 109.48813 * 63.19240 * 18 13 3 20 20 C 1.52998 * 109.48464 * 303.14717 * 18 13 3 21 21 C 1.52995 * 109.47569 * 299.66727 * 20 18 13 22 22 C 1.53007 * 109.47030 * 179.66294 * 20 18 13 23 23 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46962 * 300.00041 * 1 2 3 25 25 H 1.08998 * 109.46571 * 60.00159 * 1 2 3 26 26 H 1.08997 * 109.46962 * 239.99959 * 2 1 3 27 27 H 1.08998 * 109.46571 * 119.99841 * 2 1 3 28 28 H 0.96995 * 120.00236 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.48762 * 56.85746 * 14 13 3 30 30 H 1.08995 * 109.48785 * 296.81333 * 14 13 3 31 31 H 1.09004 * 109.49027 * 298.42410 * 15 14 13 32 32 H 1.09001 * 109.48836 * 178.36261 * 15 14 13 33 33 H 1.00905 * 110.99723 * 176.80735 * 16 15 14 34 34 H 1.08999 * 109.48457 * 299.35044 * 17 16 15 35 35 H 1.09003 * 109.50727 * 179.30177 * 17 16 15 36 36 H 1.08999 * 109.46989 * 59.66843 * 20 18 13 37 37 H 1.09002 * 109.46779 * 299.99630 * 21 20 18 38 38 H 1.08994 * 109.47078 * 60.00148 * 21 20 18 39 39 H 1.09007 * 109.47320 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.46914 * 297.65141 * 22 20 18 41 41 H 1.08997 * 109.46854 * 57.65166 * 22 20 18 42 42 H 1.08998 * 109.47309 * 177.65360 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3813 10 1 6.4428 2.1129 2.0838 11 1 6.4390 -0.3111 2.1548 12 1 6.6131 0.8394 0.0271 13 7 1.6515 2.0992 -1.2552 14 6 2.2888 1.4497 -2.4092 15 6 1.7981 2.1110 -3.6993 16 7 2.1168 3.5452 -3.6634 17 6 1.4791 4.1948 -2.5098 18 6 1.9698 3.5335 -1.2197 19 1 3.0483 3.6645 -1.1313 20 6 1.2768 4.1805 -0.0189 21 6 -0.2375 4.0046 -0.1482 22 6 1.6152 5.6721 0.0225 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0611 2.9499 29 1 2.0277 0.3915 -2.4209 30 1 3.3710 1.5565 -2.3347 31 1 0.7195 1.9802 -3.7875 32 1 2.2918 1.6500 -4.5548 33 1 1.8502 3.9965 -4.5256 34 1 0.3970 4.0877 -2.5845 35 1 1.7398 5.2531 -2.4980 36 1 1.6208 3.7043 0.8992 37 1 -0.5815 4.4809 -1.0663 38 1 -0.4786 2.9420 -0.1776 39 1 -0.7313 4.4660 0.7071 40 1 2.6897 5.7972 0.1566 41 1 1.3088 6.1403 -0.9129 42 1 1.0884 6.1413 0.8534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704529652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = -20.155398 kcal Electronic energy + Delta-G solvation = -19398.075705 eV Core-core repulsion = 16797.813538 eV Total energy + Delta-G solvation = -2600.262167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64479 -36.79473 -36.11642 -34.01892 -32.49780 -30.40342 -28.65420 -27.95121 -26.14378 -24.93408 -24.17943 -21.67959 -21.12955 -19.74691 -17.93655 -17.69738 -16.69141 -16.16555 -15.95577 -15.38611 -15.24073 -14.91345 -14.58633 -14.20777 -14.14985 -13.52521 -13.41893 -13.39583 -13.12841 -12.88420 -12.67502 -12.54176 -12.45761 -12.15596 -11.92791 -11.85923 -11.76967 -11.51055 -11.31608 -11.15239 -10.99282 -10.73520 -10.31172 -9.29899 -8.82410 -7.99902 -6.21241 1.33430 1.36074 1.44497 2.40132 3.17104 3.38687 3.44939 4.02363 4.17410 4.26304 4.44740 4.45890 4.53849 4.56212 4.66813 4.72814 4.76448 4.80461 4.91587 4.93490 4.98919 5.07274 5.09669 5.17413 5.23713 5.31361 5.37266 5.41860 5.46523 5.53266 5.63409 5.64606 5.69836 5.86318 6.10391 6.13033 6.27782 6.43907 6.66956 6.77636 7.02143 7.48601 8.93467 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.009679 C = 0.009476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.415967 B = 2892.276401 C = 2954.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C 0.220 3.780 4 H 0.020 0.980 5 C -0.543 4.543 6 H 0.040 0.960 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.937 3.063 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.061 3.939 15 C 0.070 3.930 16 N -0.701 5.701 17 C 0.071 3.929 18 C 0.101 3.899 19 H 0.007 0.993 20 C -0.090 4.090 21 C -0.126 4.126 22 C -0.137 4.137 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.352 0.648 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 6.754 -8.600 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.038 0.962 5 C -0.582 4.582 6 H 0.058 0.942 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.764 3.236 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.060 4.060 16 N -0.334 5.334 17 C -0.058 4.058 18 C -0.008 4.008 19 H 0.025 0.975 20 C -0.109 4.109 21 C -0.183 4.183 22 C -0.195 4.195 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.172 0.828 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.347 6.514 -8.172 12.227 hybrid contribution 1.479 -0.318 0.461 1.581 sum -4.868 6.196 -7.711 11.025 Atomic orbital electron populations 1.21546 0.96220 0.99613 1.00604 1.21471 0.94537 0.98615 1.00061 1.19065 0.91191 0.91209 0.87210 0.96250 1.21957 0.94593 1.36964 1.04733 0.94222 1.25502 1.01098 0.95208 0.95734 1.69981 1.35864 1.39267 1.09754 0.85885 0.82433 0.77508 0.77765 1.20564 1.20702 1.20222 1.62600 1.56471 1.01771 1.03272 1.21983 0.96021 0.97985 0.90820 1.21943 0.98593 0.88495 0.96935 1.60388 1.63269 1.03336 1.06372 1.22088 0.96625 0.97823 0.89268 1.21401 0.95850 0.88883 0.94668 0.97485 1.21071 0.96833 0.96054 0.96950 1.21659 0.93820 1.01647 1.01186 1.21811 1.00667 0.94428 1.02602 0.93828 0.94839 0.92436 0.95345 0.92177 0.93080 0.91663 0.97084 0.94232 0.89639 0.82843 0.93628 0.89561 0.94129 0.91636 0.93382 0.93056 0.94152 0.90837 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.80 71.98 0.71 -4.15 16 2 C -0.11 -5.17 5.12 30.60 0.16 -5.01 16 3 C 0.22 10.86 1.45 44.17 0.06 10.92 16 4 H 0.02 1.08 5.84 -2.39 -0.01 1.06 16 5 C -0.54 -29.92 7.14 25.60 0.18 -29.74 16 6 H 0.04 2.28 5.80 -2.91 -0.02 2.26 16 7 C 0.02 1.35 5.29 84.66 0.45 1.80 16 8 N -0.91 -52.27 11.29 21.45 0.24 -52.03 16 9 Si 0.94 44.85 29.54 68.60 2.03 46.87 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.52 -21.32 3.20 -849.78 -2.72 -24.04 16 14 C 0.06 2.40 4.97 86.31 0.43 2.83 16 15 C 0.07 2.10 6.72 86.31 0.58 2.68 16 16 N -0.70 -20.14 6.90 -513.44 -3.54 -23.68 16 17 C 0.07 2.11 5.29 86.31 0.46 2.56 16 18 C 0.10 3.87 1.51 44.92 0.07 3.94 16 19 H 0.01 0.33 7.04 -2.39 -0.02 0.31 16 20 C -0.09 -3.19 2.31 -10.79 -0.02 -3.22 16 21 C -0.13 -3.87 8.68 71.98 0.62 -3.25 16 22 C -0.14 -3.92 8.92 71.98 0.64 -3.28 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 2.14 7.75 -2.39 -0.02 2.12 16 26 H 0.03 1.33 6.19 -2.39 -0.01 1.32 16 27 H 0.06 3.26 5.95 -2.39 -0.01 3.25 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.07 2.62 6.15 -2.39 -0.01 2.60 16 30 H 0.01 0.51 6.38 -2.39 -0.02 0.49 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.35 7.72 8.90 -89.69 -0.80 6.92 16 34 H 0.05 1.28 6.34 -2.39 -0.02 1.26 16 35 H 0.09 2.24 6.48 -2.39 -0.02 2.23 16 36 H 0.04 1.80 6.18 -2.39 -0.01 1.78 16 37 H 0.06 1.72 6.39 -2.39 -0.02 1.70 16 38 H 0.05 1.68 7.61 -2.39 -0.02 1.66 16 39 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.74 6.35 -2.39 -0.02 1.72 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -60.13 304.12 0.53 -59.59 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.20 Total: 17.20 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 4.33 Total: -23.92 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -6.02 Total: -99.75 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -60.13 0.53 -59.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.438 kcal (2) G-P(sol) polarization free energy of solvation -60.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds