Wall clock time and date at job start Mon Mar 30 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46714 * 2 1 4 4 H 1.08998 * 109.47611 * 304.99598 * 3 2 1 5 5 C 1.50708 * 109.46905 * 185.00052 * 3 2 1 6 6 H 1.08001 * 119.99985 * 239.99660 * 5 3 2 7 7 C 1.37874 * 119.99869 * 59.99844 * 5 3 2 8 8 N 1.31506 * 120.00270 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99684 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47246 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47077 * 120.00205 * 9 7 5 12 12 H 1.48501 * 109.47002 * 240.00022 * 9 7 5 13 13 N 1.46903 * 109.47603 * 65.00166 * 3 2 1 14 14 C 1.46952 * 110.99800 * 63.74495 * 13 3 2 15 15 C 1.53053 * 109.36216 * 183.19153 * 14 13 3 16 16 N 1.46954 * 109.36588 * 301.59703 * 15 14 13 17 17 C 1.46961 * 110.88001 * 59.32147 * 16 15 14 18 18 C 1.46959 * 111.00077 * 187.54637 * 13 3 2 19 19 H 1.08994 * 109.50889 * 296.78794 * 18 13 3 20 20 C 1.52999 * 109.49062 * 56.84259 * 18 13 3 21 21 C 1.53000 * 109.47166 * 60.40955 * 20 18 13 22 22 C 1.52997 * 109.47265 * 180.41217 * 20 18 13 23 23 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46864 * 300.00142 * 1 2 3 25 25 H 1.08997 * 109.47420 * 60.00325 * 1 2 3 26 26 H 1.08994 * 109.47000 * 240.00164 * 2 1 3 27 27 H 1.09006 * 109.47252 * 119.99642 * 2 1 3 28 28 H 0.97003 * 120.00452 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.49301 * 303.15245 * 14 13 3 30 30 H 1.08993 * 109.49147 * 63.20707 * 14 13 3 31 31 H 1.08998 * 109.49072 * 181.62776 * 15 14 13 32 32 H 1.09000 * 109.48889 * 61.56902 * 15 14 13 33 33 H 1.00891 * 111.00276 * 295.45858 * 16 15 14 34 34 H 1.09004 * 109.48892 * 60.64214 * 17 16 15 35 35 H 1.08999 * 109.49390 * 180.69089 * 17 16 15 36 36 H 1.09000 * 109.46823 * 300.41503 * 20 18 13 37 37 H 1.09005 * 109.46764 * 60.00071 * 21 20 18 38 38 H 1.09003 * 109.47285 * 180.02562 * 21 20 18 39 39 H 1.08996 * 109.47463 * 300.00704 * 21 20 18 40 40 H 1.08999 * 109.46942 * 62.52495 * 22 20 18 41 41 H 1.09001 * 109.46824 * 182.52300 * 22 20 18 42 42 H 1.08997 * 109.47409 * 302.52557 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5465 -0.1942 11 1 6.4971 -0.5173 -1.4629 12 1 6.3989 1.6169 -2.6102 13 7 1.6513 2.0994 1.2552 14 6 2.2921 1.4522 2.4085 15 6 1.8010 2.1130 3.6987 16 7 2.1157 3.5479 3.6617 17 6 1.4749 4.1951 2.5083 18 6 1.9661 3.5344 1.2181 19 1 3.0440 3.6684 1.1285 20 6 1.2700 4.1788 0.0176 21 6 -0.2438 4.0008 0.1499 22 6 1.6063 5.6707 -0.0265 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 3.8293 -0.0619 -2.9494 29 1 2.0339 0.3933 2.4213 30 1 3.3738 1.5619 2.3325 31 1 2.2968 1.6539 4.5540 32 1 0.7229 1.9793 3.7882 33 1 3.1132 3.6993 3.6531 34 1 0.3931 4.0851 2.5842 35 1 1.7327 5.2541 2.4959 36 1 1.6131 3.7016 -0.9004 37 1 -0.5869 4.4779 1.0680 38 1 -0.7397 4.4595 -0.7056 39 1 -0.4834 2.9380 0.1814 40 1 2.6799 5.7972 -0.1658 41 1 1.0748 6.1385 -0.8552 42 1 1.3037 6.1392 0.9100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704529653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:15 Heat of formation + Delta-G solvation = -22.002529 kcal Electronic energy + Delta-G solvation = -19425.706551 eV Core-core repulsion = 16825.364286 eV Total energy + Delta-G solvation = -2600.342265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78687 -36.80583 -36.13485 -34.00656 -32.41357 -30.43551 -28.59871 -27.93461 -25.98779 -24.89707 -24.19190 -22.04299 -21.15003 -19.92293 -18.20963 -17.37256 -16.58167 -16.06133 -15.98967 -15.61940 -15.28627 -14.77770 -14.62985 -14.32518 -13.68979 -13.57786 -13.42742 -13.26716 -13.09023 -12.99222 -12.77949 -12.58254 -12.41925 -12.27019 -11.89726 -11.78340 -11.76212 -11.55994 -11.44932 -11.31096 -11.07384 -10.93889 -10.37063 -9.24801 -8.83196 -8.03194 -6.25641 1.29782 1.33685 1.41754 2.36183 3.13567 3.32755 3.48396 4.07604 4.13571 4.35580 4.39215 4.44698 4.50524 4.55457 4.65662 4.70444 4.75073 4.84616 4.87281 4.92199 4.94121 5.04278 5.12790 5.15760 5.24138 5.27166 5.35638 5.39083 5.44621 5.50382 5.62132 5.63438 5.67123 5.84167 6.08063 6.09554 6.23293 6.39360 6.49614 6.75003 6.97548 7.44575 8.89979 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.009718 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.369228 B = 2880.600851 C = 2940.997739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.220 3.780 4 H 0.018 0.982 5 C -0.543 4.543 6 H 0.041 0.959 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.939 3.061 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.514 5.514 14 C 0.026 3.974 15 C 0.068 3.932 16 N -0.684 5.684 17 C 0.070 3.930 18 C 0.066 3.934 19 H 0.006 0.994 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.138 4.138 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.064 0.936 30 H 0.010 0.990 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.335 0.665 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 6.454 7.712 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.036 0.964 5 C -0.583 4.583 6 H 0.059 0.941 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.238 5.238 14 C -0.104 4.104 15 C -0.062 4.062 16 N -0.311 5.311 17 C -0.060 4.060 18 C -0.044 4.044 19 H 0.024 0.976 20 C -0.106 4.106 21 C -0.184 4.184 22 C -0.196 4.196 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.929 6.492 8.069 11.934 hybrid contribution 2.930 -0.768 -1.642 3.446 sum -2.999 5.723 6.427 9.114 Atomic orbital electron populations 1.21549 0.96231 0.99600 1.00635 1.21465 0.94542 0.98672 0.99970 1.19071 0.91186 0.91145 0.87291 0.96380 1.21964 0.94522 1.37049 1.04730 0.94119 1.25524 1.01179 0.95220 0.95743 1.69992 1.35863 1.39183 1.09811 0.85809 0.82287 0.77633 0.77686 1.20034 1.20699 1.20817 1.62562 1.56490 1.01568 1.03153 1.22675 0.95748 0.99390 0.92630 1.22076 1.01728 0.87335 0.95038 1.60933 1.15690 1.12207 1.42260 1.22253 1.00106 0.97721 0.85945 1.22138 0.95804 0.89520 0.96981 0.97624 1.21024 0.96828 0.95962 0.96831 1.21662 0.93837 1.01643 1.01241 1.21817 1.00618 0.94448 1.02688 0.93886 0.92302 0.94925 0.92306 0.95376 0.93077 0.91787 0.97208 0.89513 0.90395 0.84806 0.89898 0.89408 0.94514 0.91404 0.93218 0.93423 0.94126 0.91983 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.80 71.98 0.71 -4.15 16 2 C -0.11 -5.11 5.12 30.59 0.16 -4.95 16 3 C 0.22 10.65 1.45 44.17 0.06 10.71 16 4 H 0.02 1.00 5.83 -2.39 -0.01 0.98 16 5 C -0.54 -29.19 7.15 25.60 0.18 -29.00 16 6 H 0.04 2.24 5.80 -2.91 -0.02 2.23 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -51.83 11.29 21.44 0.24 -51.59 16 9 Si 0.94 44.01 29.54 68.60 2.03 46.04 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.51 -20.45 3.20 -849.77 -2.72 -23.17 16 14 C 0.03 0.96 4.96 86.31 0.43 1.39 16 15 C 0.07 2.00 6.72 86.31 0.58 2.58 16 16 N -0.68 -19.39 6.91 -513.42 -3.55 -22.94 16 17 C 0.07 2.00 5.30 86.31 0.46 2.46 16 18 C 0.07 2.40 1.51 44.92 0.07 2.47 16 19 H 0.01 0.25 7.05 -2.39 -0.02 0.23 16 20 C -0.09 -3.02 2.31 -10.79 -0.02 -3.05 16 21 C -0.13 -3.86 8.68 71.98 0.62 -3.24 16 22 C -0.14 -3.83 8.92 71.98 0.64 -3.19 16 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.18 5.95 -2.39 -0.01 3.17 16 27 H 0.03 1.31 6.19 -2.38 -0.01 1.29 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.06 2.49 6.15 -2.39 -0.01 2.48 16 30 H 0.01 0.42 6.37 -2.39 -0.02 0.40 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.34 9.42 8.88 -89.70 -0.80 8.62 16 34 H 0.08 2.36 6.34 -2.38 -0.02 2.34 16 35 H 0.09 2.22 6.48 -2.39 -0.02 2.20 16 36 H 0.04 1.61 6.17 -2.39 -0.01 1.59 16 37 H 0.07 1.76 6.38 -2.38 -0.02 1.75 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.65 7.62 -2.39 -0.02 1.63 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.73 6.35 -2.39 -0.02 1.71 16 Total: -1.00 -57.64 304.11 0.53 -57.11 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.20 Total: 20.80 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.33 Total: -26.25 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -6.03 Total: -97.70 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -57.64 0.53 -57.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704529653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.112 kcal (2) G-P(sol) polarization free energy of solvation -57.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds