Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 H 1.09000 * 109.47235 * 177.68154 * 3 2 1 5 5 C 1.50696 * 109.47475 * 297.68412 * 3 2 1 6 6 H 1.07995 * 120.00140 * 119.99890 * 5 3 2 7 7 C 1.37875 * 119.99764 * 299.99703 * 5 3 2 8 8 N 1.31513 * 120.00295 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47017 * 90.00300 * 9 7 5 11 11 H 1.48508 * 109.47072 * 210.00024 * 9 7 5 12 12 H 1.48486 * 109.47057 * 330.00179 * 9 7 5 13 13 N 1.46899 * 109.46779 * 57.68308 * 3 2 1 14 14 C 1.44257 * 111.00299 * 63.33968 * 13 3 2 15 15 C 1.53937 * 112.54609 * 217.13877 * 14 13 3 16 16 N 1.48199 * 112.77107 * 318.37462 * 15 14 13 17 17 C 1.46897 * 111.00079 * 191.67985 * 16 15 14 18 18 C 1.44251 * 114.27755 * 318.13869 * 16 15 14 19 19 C 1.54261 * 108.65319 * 93.38669 * 18 16 15 20 20 H 1.09003 * 108.99961 * 42.02886 * 19 18 16 21 21 C 1.53007 * 108.99533 * 160.78261 * 19 18 16 22 22 C 1.46139 * 111.89669 * 281.40498 * 19 18 16 23 23 H 1.08997 * 109.46709 * 185.32020 * 1 2 3 24 24 H 1.09002 * 109.46963 * 305.31667 * 1 2 3 25 25 H 1.08996 * 109.47029 * 65.31882 * 1 2 3 26 26 H 1.09004 * 109.46779 * 240.00340 * 2 1 3 27 27 H 1.08995 * 109.47001 * 120.00709 * 2 1 3 28 28 H 0.97001 * 120.00485 * 179.97438 * 8 7 5 29 29 H 1.09007 * 108.86465 * 337.92060 * 14 13 3 30 30 H 1.08998 * 108.87586 * 96.44500 * 14 13 3 31 31 H 1.08993 * 108.82156 * 79.22570 * 15 14 13 32 32 H 1.09005 * 108.82071 * 197.52836 * 15 14 13 33 33 H 1.08992 * 109.47236 * 63.95402 * 17 16 15 34 34 H 1.08999 * 109.47090 * 183.95867 * 17 16 15 35 35 H 1.09001 * 109.46866 * 303.95304 * 17 16 15 36 36 H 1.09000 * 109.60524 * 333.63812 * 18 16 15 37 37 H 1.09000 * 109.60807 * 213.13797 * 18 16 15 38 38 H 1.08997 * 109.46960 * 182.38352 * 21 19 18 39 39 H 1.08993 * 109.47144 * 302.38424 * 21 19 18 40 40 H 1.08995 * 109.47053 * 62.38413 * 21 19 18 41 41 H 1.08996 * 108.94028 * 181.56758 * 22 19 18 42 42 H 1.09000 * 108.93359 * 300.25409 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0416 5 6 1.5852 2.1362 -1.2581 6 1 0.9612 3.0153 -1.1946 7 6 1.9657 1.6484 -2.4903 8 7 2.7252 0.5776 -2.5677 9 14 1.4013 2.5079 -4.0499 10 1 2.3939 3.5446 -4.4307 11 1 1.2785 1.5137 -5.1463 12 1 0.0829 3.1484 -3.8126 13 7 1.5051 2.1508 1.1705 14 6 1.9844 1.5599 2.3961 15 6 0.9171 1.5539 3.5053 16 7 0.1448 2.8174 3.5650 17 6 -0.6606 2.8846 4.7917 18 6 0.9427 4.0084 3.4046 19 6 0.9397 4.4072 1.9144 20 1 -0.0683 4.2880 1.5172 21 6 1.3508 5.8759 1.7912 22 6 1.8605 3.5880 1.1291 23 1 -0.3632 -1.0232 0.0953 24 1 -0.3633 0.5941 0.8386 25 1 -0.3633 0.4291 -0.9338 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.9926 0.2342 -3.4346 29 1 2.2905 0.5330 2.1960 30 1 2.8497 2.1236 2.7446 31 1 0.2281 0.7287 3.3259 32 1 1.4086 1.3965 4.4654 33 1 -0.0008 2.9056 5.6589 34 1 -1.2703 3.7881 4.7769 35 1 -1.3086 2.0100 4.8492 36 1 1.9646 3.8103 3.7282 37 1 0.5179 4.8163 4.0003 38 1 1.3104 6.1778 0.7446 39 1 0.6686 6.4943 2.3744 40 1 2.3663 6.0017 2.1666 41 1 1.8410 3.9276 0.0936 42 1 2.8691 3.7131 1.5230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707572123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = 13.326867 kcal Electronic energy + Delta-G solvation = -19079.413346 eV Core-core repulsion = 16480.603078 eV Total energy + Delta-G solvation = -2598.810267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.07268 -36.10587 -34.25402 -32.69633 -30.71492 -28.82812 -26.73747 -26.06132 -25.28748 -23.26877 -22.58434 -20.29605 -19.46759 -18.49791 -16.23378 -15.89853 -15.11236 -14.79351 -14.52779 -14.21615 -13.52479 -13.16222 -13.10760 -12.69128 -12.44066 -12.33084 -12.05781 -11.74590 -11.53404 -11.46200 -11.16803 -10.89098 -10.74555 -10.57000 -10.47572 -10.35458 -10.05170 -9.86226 -9.73056 -9.49901 -9.24190 -8.70489 -8.35067 -7.74611 -6.98851 -5.95780 -3.98400 3.32986 3.40189 3.44483 4.23432 4.45851 4.95921 5.25939 5.33652 5.39136 5.46355 5.61994 5.66819 5.68974 5.77847 5.89823 5.94373 6.00570 6.05547 6.16352 6.26408 6.30430 6.45737 6.52373 6.54256 6.67023 6.72636 6.88914 6.99884 7.04164 7.27308 7.43148 7.48515 7.52464 7.67899 7.76215 7.88246 7.91167 8.28096 8.44750 8.74790 9.07762 9.65182 11.10747 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.008370 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.286783 B = 3344.510221 C = 3962.581370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C 0.217 3.783 4 H -0.007 1.007 5 C -0.494 4.494 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.510 5.510 14 C 0.052 3.948 15 C 0.078 3.922 16 N -0.542 5.542 17 C 0.034 3.966 18 C 0.077 3.923 19 C -0.082 4.082 20 H 0.083 0.917 21 C -0.144 4.144 22 C 0.063 3.937 23 H 0.011 0.989 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 4.664 11.089 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.111 3.889 4 H 0.011 0.989 5 C -0.532 4.532 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.234 5.234 14 C -0.078 4.078 15 C -0.050 4.050 16 N -0.266 5.266 17 C -0.115 4.115 18 C -0.052 4.052 19 C -0.102 4.102 20 H 0.102 0.898 21 C -0.202 4.202 22 C -0.064 4.064 23 H 0.030 0.970 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.617 4.467 10.545 12.010 hybrid contribution 1.215 0.407 -0.140 1.289 sum -2.402 4.874 10.405 11.738 Atomic orbital electron populations 1.21454 0.97157 0.97115 1.02067 1.21573 0.95323 0.98105 0.99747 1.19286 0.92097 0.90873 0.86655 0.98936 1.21094 1.30701 1.11751 0.89678 0.91813 1.24895 0.95288 0.95076 0.98890 1.69877 1.36466 1.22541 1.24410 0.86606 0.79138 0.79236 0.83112 1.20938 1.21370 1.19816 1.61460 1.59539 1.01173 1.01182 1.21903 0.93824 1.00253 0.91845 1.22458 0.95422 0.91203 0.95914 1.60259 1.28334 1.02026 1.36018 1.22338 0.97084 1.02101 0.89948 1.21802 0.95193 0.91183 0.96983 1.20176 1.01990 0.93355 0.94632 0.89831 1.21833 1.00461 0.96292 1.01663 1.21044 0.94310 0.89556 1.01515 0.96970 0.92827 0.92957 0.89118 0.97014 0.93106 0.90984 0.96433 0.91152 0.96264 0.96819 0.91936 0.91904 0.95206 0.92445 0.92462 0.93306 0.93465 0.89214 0.97229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.50 37.16 0.35 -2.35 16 2 C -0.11 -2.62 5.26 -26.73 -0.14 -2.76 16 3 C 0.22 5.37 1.66 -68.87 -0.11 5.25 16 4 H -0.01 -0.19 8.14 -51.93 -0.42 -0.61 16 5 C -0.49 -13.15 6.53 -34.44 -0.22 -13.38 16 6 H 0.06 1.72 6.52 -52.49 -0.34 1.37 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.24 11.30 55.43 0.63 -24.61 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.51 -10.84 3.30 -232.62 -0.77 -11.61 16 14 C 0.05 0.97 4.87 -4.75 -0.02 0.95 16 15 C 0.08 1.26 5.77 -2.62 -0.02 1.25 16 16 N -0.54 -8.55 4.40 -242.55 -1.07 -9.62 16 17 C 0.03 0.42 9.33 60.06 0.56 0.98 16 18 C 0.08 1.16 4.78 -4.58 -0.02 1.14 16 19 C -0.08 -1.36 2.59 -93.21 -0.24 -1.60 16 20 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 21 C -0.14 -1.99 9.02 37.16 0.34 -1.65 16 22 C 0.06 1.25 3.95 -6.42 -0.03 1.23 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.05 1.18 7.37 -51.93 -0.38 0.80 16 25 H 0.05 1.27 7.48 -51.93 -0.39 0.88 16 26 H 0.09 2.43 6.01 -51.93 -0.31 2.12 16 27 H 0.01 0.25 6.24 -51.93 -0.32 -0.07 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.39 5.58 -51.93 -0.29 1.10 16 30 H 0.02 0.33 6.53 -51.93 -0.34 -0.01 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.28 8.04 -51.93 -0.42 -0.14 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 0.72 7.95 -51.93 -0.41 0.30 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.47 6.96 -51.93 -0.36 0.10 16 37 H 0.06 0.76 7.33 -51.93 -0.38 0.38 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.97 5.60 -51.93 -0.29 1.68 16 42 H 0.01 0.19 7.37 -51.93 -0.38 -0.19 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -27.56 308.91 -8.79 -36.35 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.56 Total: -1.97 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.35 Total: -9.43 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -1.21 Total: -45.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.56 -8.79 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.674 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds