Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 H 1.09000 * 109.47235 * 177.68154 * 3 2 1 5 5 C 1.50696 * 109.47475 * 297.68412 * 3 2 1 6 6 H 1.07995 * 120.00140 * 119.99890 * 5 3 2 7 7 C 1.37875 * 119.99764 * 299.99703 * 5 3 2 8 8 N 1.31513 * 120.00295 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47017 * 90.00300 * 9 7 5 11 11 H 1.48508 * 109.47072 * 210.00024 * 9 7 5 12 12 H 1.48486 * 109.47057 * 330.00179 * 9 7 5 13 13 N 1.46899 * 109.46779 * 57.68308 * 3 2 1 14 14 C 1.44257 * 111.00299 * 63.33968 * 13 3 2 15 15 C 1.53937 * 112.54609 * 217.13877 * 14 13 3 16 16 N 1.48199 * 112.77107 * 318.37462 * 15 14 13 17 17 C 1.46897 * 111.00079 * 191.67985 * 16 15 14 18 18 C 1.44251 * 114.27755 * 318.13869 * 16 15 14 19 19 C 1.54261 * 108.65319 * 93.38669 * 18 16 15 20 20 H 1.09003 * 108.99961 * 42.02886 * 19 18 16 21 21 C 1.53007 * 108.99533 * 160.78261 * 19 18 16 22 22 C 1.46139 * 111.89669 * 281.40498 * 19 18 16 23 23 H 1.08997 * 109.46709 * 185.32020 * 1 2 3 24 24 H 1.09002 * 109.46963 * 305.31667 * 1 2 3 25 25 H 1.08996 * 109.47029 * 65.31882 * 1 2 3 26 26 H 1.09004 * 109.46779 * 240.00340 * 2 1 3 27 27 H 1.08995 * 109.47001 * 120.00709 * 2 1 3 28 28 H 0.97001 * 120.00485 * 179.97438 * 8 7 5 29 29 H 1.09007 * 108.86465 * 337.92060 * 14 13 3 30 30 H 1.08998 * 108.87586 * 96.44500 * 14 13 3 31 31 H 1.08993 * 108.82156 * 79.22570 * 15 14 13 32 32 H 1.09005 * 108.82071 * 197.52836 * 15 14 13 33 33 H 1.08992 * 109.47236 * 63.95402 * 17 16 15 34 34 H 1.08999 * 109.47090 * 183.95867 * 17 16 15 35 35 H 1.09001 * 109.46866 * 303.95304 * 17 16 15 36 36 H 1.09000 * 109.60524 * 333.63812 * 18 16 15 37 37 H 1.09000 * 109.60807 * 213.13797 * 18 16 15 38 38 H 1.08997 * 109.46960 * 182.38352 * 21 19 18 39 39 H 1.08993 * 109.47144 * 302.38424 * 21 19 18 40 40 H 1.08995 * 109.47053 * 62.38413 * 21 19 18 41 41 H 1.08996 * 108.94028 * 181.56758 * 22 19 18 42 42 H 1.09000 * 108.93359 * 300.25409 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0416 5 6 1.5852 2.1362 -1.2581 6 1 0.9612 3.0153 -1.1946 7 6 1.9657 1.6484 -2.4903 8 7 2.7252 0.5776 -2.5677 9 14 1.4013 2.5079 -4.0499 10 1 2.3939 3.5446 -4.4307 11 1 1.2785 1.5137 -5.1463 12 1 0.0829 3.1484 -3.8126 13 7 1.5051 2.1508 1.1705 14 6 1.9844 1.5599 2.3961 15 6 0.9171 1.5539 3.5053 16 7 0.1448 2.8174 3.5650 17 6 -0.6606 2.8846 4.7917 18 6 0.9427 4.0084 3.4046 19 6 0.9397 4.4072 1.9144 20 1 -0.0683 4.2880 1.5172 21 6 1.3508 5.8759 1.7912 22 6 1.8605 3.5880 1.1291 23 1 -0.3632 -1.0232 0.0953 24 1 -0.3633 0.5941 0.8386 25 1 -0.3633 0.4291 -0.9338 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.9926 0.2342 -3.4346 29 1 2.2905 0.5330 2.1960 30 1 2.8497 2.1236 2.7446 31 1 0.2281 0.7287 3.3259 32 1 1.4086 1.3965 4.4654 33 1 -0.0008 2.9056 5.6589 34 1 -1.2703 3.7881 4.7769 35 1 -1.3086 2.0100 4.8492 36 1 1.9646 3.8103 3.7282 37 1 0.5179 4.8163 4.0003 38 1 1.3104 6.1778 0.7446 39 1 0.6686 6.4943 2.3744 40 1 2.3663 6.0017 2.1666 41 1 1.8410 3.9276 0.0936 42 1 2.8691 3.7131 1.5230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707572123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -3.447408 kcal Electronic energy + Delta-G solvation = -19080.140733 eV Core-core repulsion = 16480.603078 eV Total energy + Delta-G solvation = -2599.537654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54528 -37.68648 -35.63382 -34.54923 -32.60281 -30.32062 -27.99557 -27.74233 -26.87106 -24.84156 -24.18989 -21.86168 -20.91445 -20.18146 -18.17817 -17.48752 -16.74533 -16.25955 -16.00732 -15.68866 -15.17107 -14.82382 -14.48250 -14.18331 -13.97794 -13.80987 -13.53380 -13.35556 -12.85471 -12.81230 -12.67468 -12.60152 -12.41914 -12.19764 -12.15619 -11.90796 -11.72778 -11.47500 -11.32872 -11.27380 -11.04155 -10.69993 -10.41883 -8.93679 -8.72878 -8.05840 -6.14501 1.41425 1.43534 1.53406 2.44794 3.03988 3.23014 3.42111 4.05893 4.09252 4.22448 4.25555 4.41795 4.54784 4.58807 4.61594 4.71334 4.73893 4.78299 4.80029 4.83010 4.90013 4.93149 5.02294 5.09480 5.15334 5.19132 5.35564 5.37004 5.45164 5.49867 5.54426 5.67501 5.77962 5.84527 5.96292 6.33317 6.35669 6.48062 6.55204 6.92411 7.00159 7.52771 8.99915 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.008370 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.286783 B = 3344.510221 C = 3962.581370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.049 1.049 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.511 5.511 14 C 0.051 3.949 15 C 0.086 3.914 16 N -0.564 5.564 17 C 0.035 3.965 18 C 0.083 3.917 19 C -0.079 4.079 20 H 0.064 0.936 21 C -0.137 4.137 22 C 0.069 3.931 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 5.650 12.659 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.538 4.538 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.235 5.235 14 C -0.079 4.079 15 C -0.042 4.042 16 N -0.288 5.288 17 C -0.112 4.112 18 C -0.045 4.045 19 C -0.098 4.098 20 H 0.082 0.918 21 C -0.195 4.195 22 C -0.059 4.059 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -4.812 5.464 12.139 14.155 hybrid contribution 1.619 0.097 -0.585 1.724 sum -3.194 5.562 11.554 13.215 Atomic orbital electron populations 1.21279 0.95657 0.98427 1.00840 1.21434 0.96468 0.97341 0.99024 1.19074 0.89599 0.91846 0.87840 1.03152 1.21273 1.30262 1.11502 0.90732 0.92544 1.25597 0.95472 0.95707 1.01696 1.70010 1.37460 1.23693 1.24923 0.85679 0.78804 0.78274 0.79655 1.20432 1.21121 1.19391 1.61514 1.59133 1.01800 1.01008 1.21969 0.95054 0.99345 0.91540 1.22298 0.94665 0.91754 0.95447 1.60217 1.28565 1.01765 1.38283 1.22379 0.96943 1.03039 0.88856 1.21740 0.95210 0.91876 0.95685 1.20113 0.99723 0.94516 0.95493 0.91803 1.21769 1.01492 0.94506 1.01777 1.21051 0.95168 0.89174 1.00475 0.94620 0.92452 0.95290 0.92064 0.95469 0.93187 0.91954 0.96483 0.91430 0.94095 0.95496 0.90671 0.91438 0.95660 0.89772 0.93250 0.90773 0.92746 0.92130 0.97672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.66 9.50 71.98 0.68 -3.98 16 2 C -0.10 -5.09 5.26 30.60 0.16 -4.93 16 3 C 0.22 11.41 1.66 44.17 0.07 11.48 16 4 H -0.05 -2.85 8.14 -2.39 -0.02 -2.87 16 5 C -0.50 -27.35 6.53 25.60 0.17 -27.18 16 6 H 0.06 3.12 6.52 -2.91 -0.02 3.10 16 7 C 0.01 0.75 5.30 84.65 0.45 1.20 16 8 N -0.92 -53.41 11.30 21.45 0.24 -53.17 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 N -0.51 -21.97 3.30 -889.88 -2.93 -24.90 16 14 C 0.05 1.88 4.87 87.11 0.42 2.30 16 15 C 0.09 2.61 5.77 86.37 0.50 3.11 16 16 N -0.56 -16.29 4.40 -921.29 -4.05 -20.34 16 17 C 0.04 0.76 9.33 127.69 1.19 1.95 16 18 C 0.08 2.30 4.78 87.23 0.42 2.72 16 19 C -0.08 -2.52 2.59 -12.47 -0.03 -2.56 16 20 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 21 C -0.14 -3.52 9.02 71.98 0.65 -2.88 16 22 C 0.07 2.76 3.95 83.96 0.33 3.09 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 2.48 7.37 -2.39 -0.02 2.47 16 25 H 0.03 1.39 7.48 -2.39 -0.02 1.37 16 26 H 0.06 3.37 6.01 -2.39 -0.01 3.36 16 27 H 0.03 1.21 6.24 -2.39 -0.01 1.20 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.06 2.41 5.58 -2.38 -0.01 2.39 16 30 H 0.02 0.63 6.53 -2.39 -0.02 0.61 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.08 8.04 -2.38 -0.02 1.06 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 1.43 7.95 -2.39 -0.02 1.41 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 0.73 6.96 -2.39 -0.02 0.71 16 37 H 0.08 1.89 7.33 -2.39 -0.02 1.87 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 2.75 5.60 -2.39 -0.01 2.74 16 42 H 0.01 0.21 7.37 -2.39 -0.02 0.19 16 Total: -1.00 -60.10 308.91 1.25 -58.84 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.96 Total: 8.98 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.01 Total: -15.67 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -6.75 Total: -98.41 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -60.10 1.25 -58.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.394 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds