Wall clock time and date at job start Mon Mar 30 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47391 * 2 1 4 4 H 1.08996 * 109.46547 * 303.57918 * 3 2 1 5 5 C 1.50694 * 109.47054 * 183.57792 * 3 2 1 6 6 H 1.08006 * 119.99913 * 245.42848 * 5 3 2 7 7 C 1.37880 * 120.00271 * 65.43061 * 5 3 2 8 8 N 1.31515 * 119.99634 * 9.52913 * 7 5 3 9 9 Si 1.86796 * 120.00106 * 189.53178 * 7 5 3 10 10 H 1.48500 * 109.47201 * 84.99566 * 9 7 5 11 11 H 1.48506 * 109.47097 * 204.99158 * 9 7 5 12 12 H 1.48495 * 109.47370 * 324.99489 * 9 7 5 13 13 N 1.46893 * 109.46865 * 63.57719 * 3 2 1 14 14 C 1.44581 * 111.00372 * 66.05056 * 13 3 2 15 15 C 1.54207 * 108.85333 * 220.34904 * 14 13 3 16 16 N 1.40017 * 112.07484 * 281.19027 * 15 14 13 17 17 C 1.46900 * 110.99401 * 188.09878 * 16 15 14 18 18 C 1.47904 * 114.07274 * 61.80902 * 16 15 14 19 19 C 1.50795 * 108.49860 * 280.06442 * 18 16 15 20 20 H 1.09006 * 108.95309 * 331.88090 * 19 18 16 21 21 C 1.52996 * 108.95830 * 213.22511 * 19 18 16 22 22 C 1.48067 * 110.99918 * 193.74504 * 13 3 2 23 23 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47032 * 300.00149 * 1 2 3 25 25 H 1.09002 * 109.47195 * 59.99839 * 1 2 3 26 26 H 1.09001 * 109.47032 * 239.99851 * 2 1 3 27 27 H 1.09004 * 109.47354 * 119.99639 * 2 1 3 28 28 H 0.96999 * 119.99956 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.57238 * 100.53447 * 14 13 3 30 30 H 1.09000 * 109.57020 * 340.15537 * 14 13 3 31 31 H 1.08996 * 108.95820 * 41.85519 * 15 14 13 32 32 H 1.09001 * 108.95859 * 160.52177 * 15 14 13 33 33 H 1.09001 * 109.47238 * 56.04653 * 17 16 15 34 34 H 1.09007 * 109.46767 * 176.04426 * 17 16 15 35 35 H 1.09002 * 109.47634 * 296.04676 * 17 16 15 36 36 H 1.09000 * 109.63186 * 39.76894 * 18 16 15 37 37 H 1.09001 * 109.63112 * 160.16497 * 18 16 15 38 38 H 1.08998 * 109.46809 * 60.00356 * 21 19 18 39 39 H 1.09005 * 109.47052 * 180.02562 * 21 19 18 40 40 H 1.08998 * 109.47215 * 300.00220 * 21 19 18 41 41 H 1.08999 * 108.88155 * 71.42540 * 22 13 3 42 42 H 1.09008 * 108.80034 * 312.90755 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9745 -0.8562 5 6 3.5444 1.4434 -0.0887 6 1 4.1337 1.8149 0.7367 7 6 4.1684 0.9700 -1.2234 8 7 3.4602 0.6939 -2.2966 9 14 6.0196 0.7207 -1.2362 10 1 6.3432 -0.6148 -0.6733 11 1 6.5206 0.8043 -2.6317 12 1 6.6667 1.7744 -0.4140 13 7 1.6222 2.1096 1.2403 14 6 2.2675 1.5167 2.3903 15 6 1.2445 1.4181 3.5399 16 7 1.0624 2.6453 4.1890 17 6 0.2359 2.4863 5.3930 18 6 0.5296 3.7153 3.3178 19 6 1.6659 4.2779 2.5016 20 1 2.5954 4.1571 3.0582 21 6 1.4193 5.7697 2.2682 22 6 1.8038 3.5757 1.1413 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8992 0.3612 -3.0950 29 1 3.1062 2.1401 2.7001 30 1 2.6261 0.5198 2.1341 31 1 0.2883 1.0860 3.1356 32 1 1.5954 0.6830 4.2642 33 1 0.6893 1.7436 6.0494 34 1 0.1684 3.4404 5.9159 35 1 -0.7631 2.1571 5.1072 36 1 -0.2294 3.3026 2.6533 37 1 0.0907 4.5022 3.9311 38 1 1.3659 6.2836 3.2279 39 1 2.2362 6.1850 1.6780 40 1 0.4798 5.9030 1.7319 41 1 1.0553 3.9786 0.4590 42 1 2.7954 3.7805 0.7376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707572128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:21 Heat of formation + Delta-G solvation = 3.046134 kcal Electronic energy + Delta-G solvation = -19012.621234 eV Core-core repulsion = 16413.365161 eV Total energy + Delta-G solvation = -2599.256073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.14027 -36.21162 -34.23677 -32.39126 -31.12318 -28.67106 -26.74519 -26.48246 -24.77853 -23.61930 -22.32440 -20.48112 -19.36420 -18.66068 -16.23300 -15.66299 -15.42453 -15.04571 -14.62299 -14.03857 -13.75297 -13.02222 -12.88704 -12.69623 -12.48993 -12.23563 -12.16232 -11.78359 -11.66228 -11.38794 -11.17567 -10.93784 -10.70285 -10.66358 -10.44941 -10.39402 -10.23079 -10.11580 -9.72473 -9.54839 -9.40509 -9.07658 -8.33234 -7.82528 -6.98741 -5.99053 -4.07864 3.28793 3.35801 3.38607 4.34256 4.42384 5.01942 5.24371 5.27885 5.37077 5.43038 5.59968 5.67155 5.75314 5.96345 5.98634 6.04785 6.07769 6.14740 6.19096 6.33164 6.37169 6.39276 6.43216 6.48197 6.58117 6.68231 6.80005 6.84938 6.97548 7.11123 7.16281 7.37237 7.49469 7.64370 7.73442 7.80398 7.95480 8.22721 8.38563 8.59996 9.03233 9.58428 11.02755 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.007957 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.881525 B = 3517.870197 C = 3834.659655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.042 0.958 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.548 5.548 14 C 0.076 3.924 15 C 0.073 3.927 16 N -0.557 5.557 17 C 0.033 3.967 18 C 0.080 3.920 19 C -0.093 4.093 20 H 0.073 0.927 21 C -0.140 4.140 22 C 0.074 3.926 23 H 0.024 0.976 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 4.249 10.048 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.060 0.940 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.272 5.272 14 C -0.053 4.053 15 C -0.057 4.057 16 N -0.281 5.281 17 C -0.115 4.115 18 C -0.047 4.047 19 C -0.112 4.112 20 H 0.092 0.908 21 C -0.199 4.199 22 C -0.054 4.054 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.725 4.233 10.026 12.297 hybrid contribution 1.215 -0.364 -0.482 1.357 sum -4.510 3.869 9.544 11.243 Atomic orbital electron populations 1.21695 0.98646 0.98377 1.00732 1.21527 0.92520 0.99344 1.00688 1.19261 0.92778 0.90553 0.86330 0.94049 1.21749 0.92635 1.42372 1.01488 0.92663 1.24915 0.97680 0.95401 0.95273 1.69958 1.35560 1.44549 1.02154 0.86763 0.86407 0.78702 0.77063 1.20592 1.21361 1.20123 1.61124 1.59339 1.02166 1.04594 1.21691 0.93666 1.00230 0.89758 1.21134 0.99213 0.89552 0.95846 1.59254 1.50762 1.09333 1.08720 1.22286 0.94997 1.01355 0.92891 1.21766 0.96134 0.92719 0.94069 1.21032 0.99394 0.94155 0.96660 0.90812 1.21808 1.01507 0.95659 1.00906 1.22224 1.00169 0.88545 0.94473 0.95661 0.93226 0.94175 0.91024 0.94571 0.92935 0.94527 0.90315 0.95700 0.92494 0.92038 0.92124 0.96237 0.93307 0.92221 0.93152 0.92736 0.92948 0.92673 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.79 37.15 0.36 -2.39 16 2 C -0.10 -2.37 5.18 -26.73 -0.14 -2.51 16 3 C 0.22 5.27 1.55 -68.87 -0.11 5.16 16 4 H 0.04 1.14 7.98 -51.93 -0.41 0.73 16 5 C -0.54 -14.43 6.79 -34.44 -0.23 -14.67 16 6 H 0.06 1.49 6.91 -52.48 -0.36 1.13 16 7 C 0.07 1.91 5.17 -17.82 -0.09 1.82 16 8 N -0.88 -25.01 12.16 55.43 0.67 -24.34 16 9 Si 0.88 21.19 29.55 -169.99 -5.02 16.17 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.55 -11.40 3.26 -227.71 -0.74 -12.14 16 14 C 0.08 1.50 3.91 -4.44 -0.02 1.49 16 15 C 0.07 1.22 5.04 -6.75 -0.03 1.19 16 16 N -0.56 -8.56 4.32 -248.07 -1.07 -9.64 16 17 C 0.03 0.40 9.46 60.06 0.57 0.97 16 18 C 0.08 1.21 4.85 -4.38 -0.02 1.18 16 19 C -0.09 -1.49 2.25 -91.36 -0.21 -1.69 16 20 H 0.07 1.28 7.23 -51.93 -0.38 0.91 16 21 C -0.14 -1.85 8.81 37.16 0.33 -1.52 16 22 C 0.07 1.43 4.71 -2.82 -0.01 1.42 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.85 6.83 -51.93 -0.35 1.50 16 27 H 0.04 0.82 6.29 -51.93 -0.33 0.49 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.76 6.72 -51.93 -0.35 0.41 16 30 H 0.08 1.68 5.49 -51.93 -0.29 1.39 16 31 H 0.02 0.44 8.07 -51.93 -0.42 0.03 16 32 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 33 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 34 H 0.06 0.66 7.97 -51.93 -0.41 0.25 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.05 0.81 7.57 -51.93 -0.39 0.42 16 37 H 0.06 0.79 7.32 -51.93 -0.38 0.41 16 38 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 1.06 7.97 -51.93 -0.41 0.65 16 42 H 0.04 0.90 7.28 -51.92 -0.38 0.52 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -27.14 312.43 -8.82 -35.96 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.76 Total: -1.17 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.40 Total: -9.55 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -1.14 Total: -46.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.14 -8.82 -35.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.004 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds