Wall clock time and date at job start Mon Mar 30 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47391 * 2 1 4 4 H 1.08996 * 109.46547 * 303.57918 * 3 2 1 5 5 C 1.50694 * 109.47054 * 183.57792 * 3 2 1 6 6 H 1.08006 * 119.99913 * 245.42848 * 5 3 2 7 7 C 1.37880 * 120.00271 * 65.43061 * 5 3 2 8 8 N 1.31515 * 119.99634 * 9.52913 * 7 5 3 9 9 Si 1.86796 * 120.00106 * 189.53178 * 7 5 3 10 10 H 1.48500 * 109.47201 * 84.99566 * 9 7 5 11 11 H 1.48506 * 109.47097 * 204.99158 * 9 7 5 12 12 H 1.48495 * 109.47370 * 324.99489 * 9 7 5 13 13 N 1.46893 * 109.46865 * 63.57719 * 3 2 1 14 14 C 1.44581 * 111.00372 * 66.05056 * 13 3 2 15 15 C 1.54207 * 108.85333 * 220.34904 * 14 13 3 16 16 N 1.40017 * 112.07484 * 281.19027 * 15 14 13 17 17 C 1.46900 * 110.99401 * 188.09878 * 16 15 14 18 18 C 1.47904 * 114.07274 * 61.80902 * 16 15 14 19 19 C 1.50795 * 108.49860 * 280.06442 * 18 16 15 20 20 H 1.09006 * 108.95309 * 331.88090 * 19 18 16 21 21 C 1.52996 * 108.95830 * 213.22511 * 19 18 16 22 22 C 1.48067 * 110.99918 * 193.74504 * 13 3 2 23 23 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47032 * 300.00149 * 1 2 3 25 25 H 1.09002 * 109.47195 * 59.99839 * 1 2 3 26 26 H 1.09001 * 109.47032 * 239.99851 * 2 1 3 27 27 H 1.09004 * 109.47354 * 119.99639 * 2 1 3 28 28 H 0.96999 * 119.99956 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.57238 * 100.53447 * 14 13 3 30 30 H 1.09000 * 109.57020 * 340.15537 * 14 13 3 31 31 H 1.08996 * 108.95820 * 41.85519 * 15 14 13 32 32 H 1.09001 * 108.95859 * 160.52177 * 15 14 13 33 33 H 1.09001 * 109.47238 * 56.04653 * 17 16 15 34 34 H 1.09007 * 109.46767 * 176.04426 * 17 16 15 35 35 H 1.09002 * 109.47634 * 296.04676 * 17 16 15 36 36 H 1.09000 * 109.63186 * 39.76894 * 18 16 15 37 37 H 1.09001 * 109.63112 * 160.16497 * 18 16 15 38 38 H 1.08998 * 109.46809 * 60.00356 * 21 19 18 39 39 H 1.09005 * 109.47052 * 180.02562 * 21 19 18 40 40 H 1.08998 * 109.47215 * 300.00220 * 21 19 18 41 41 H 1.08999 * 108.88155 * 71.42540 * 22 13 3 42 42 H 1.09008 * 108.80034 * 312.90755 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9745 -0.8562 5 6 3.5444 1.4434 -0.0887 6 1 4.1337 1.8149 0.7367 7 6 4.1684 0.9700 -1.2234 8 7 3.4602 0.6939 -2.2966 9 14 6.0196 0.7207 -1.2362 10 1 6.3432 -0.6148 -0.6733 11 1 6.5206 0.8043 -2.6317 12 1 6.6667 1.7744 -0.4140 13 7 1.6222 2.1096 1.2403 14 6 2.2675 1.5167 2.3903 15 6 1.2445 1.4181 3.5399 16 7 1.0624 2.6453 4.1890 17 6 0.2359 2.4863 5.3930 18 6 0.5296 3.7153 3.3178 19 6 1.6659 4.2779 2.5016 20 1 2.5954 4.1571 3.0582 21 6 1.4193 5.7697 2.2682 22 6 1.8038 3.5757 1.1413 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8992 0.3612 -3.0950 29 1 3.1062 2.1401 2.7001 30 1 2.6261 0.5198 2.1341 31 1 0.2883 1.0860 3.1356 32 1 1.5954 0.6830 4.2642 33 1 0.6893 1.7436 6.0494 34 1 0.1684 3.4404 5.9159 35 1 -0.7631 2.1571 5.1072 36 1 -0.2294 3.3026 2.6533 37 1 0.0907 4.5022 3.9311 38 1 1.3659 6.2836 3.2279 39 1 2.2362 6.1850 1.6780 40 1 0.4798 5.9030 1.7319 41 1 1.0553 3.9786 0.4590 42 1 2.7954 3.7805 0.7376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707572128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:20 Heat of formation + Delta-G solvation = -13.367975 kcal Electronic energy + Delta-G solvation = -19013.333003 eV Core-core repulsion = 16413.365161 eV Total energy + Delta-G solvation = -2599.967842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59141 -37.82225 -35.60917 -34.31587 -32.90022 -30.13540 -28.39114 -27.77748 -26.35244 -25.19887 -23.95978 -21.92464 -20.98189 -20.30051 -18.25953 -17.30003 -16.82460 -16.39867 -16.34082 -15.52295 -15.38377 -14.73112 -14.33870 -14.13211 -13.89405 -13.62242 -13.49164 -13.32248 -13.24964 -12.91358 -12.78543 -12.61569 -12.43952 -12.25413 -12.05638 -11.88375 -11.74422 -11.61250 -11.46874 -11.33733 -11.13850 -10.94311 -10.43975 -9.03699 -8.81910 -8.06063 -6.24862 1.35270 1.37338 1.45180 2.39288 3.12153 3.17091 3.40225 3.97719 4.14637 4.20173 4.35095 4.49032 4.57160 4.59448 4.68117 4.71215 4.76223 4.83143 4.85405 4.88627 4.92567 4.98369 5.02021 5.08285 5.10863 5.24510 5.26593 5.33948 5.36810 5.38965 5.47579 5.55839 5.61868 5.78513 5.94977 6.23587 6.32403 6.40951 6.56915 6.83626 6.98280 7.44874 8.90938 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.007957 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.881525 B = 3517.870197 C = 3834.659655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.541 5.541 14 C 0.081 3.919 15 C 0.088 3.912 16 N -0.568 5.568 17 C 0.034 3.966 18 C 0.084 3.916 19 C -0.084 4.084 20 H 0.059 0.941 21 C -0.134 4.134 22 C 0.075 3.925 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 4.713 12.128 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.134 4.134 3 C 0.117 3.883 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.264 5.264 14 C -0.049 4.049 15 C -0.043 4.043 16 N -0.293 5.293 17 C -0.113 4.113 18 C -0.042 4.042 19 C -0.103 4.103 20 H 0.078 0.922 21 C -0.193 4.193 22 C -0.053 4.053 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.401 4.702 12.130 14.499 hybrid contribution 1.427 -0.474 -1.117 1.873 sum -4.974 4.228 11.013 12.803 Atomic orbital electron populations 1.21544 0.96027 0.99877 1.00659 1.21362 0.94786 0.98008 0.99261 1.19024 0.91437 0.91162 0.86667 0.97932 1.21957 0.93963 1.41923 1.01073 0.93696 1.25593 1.01633 0.95367 0.95029 1.70066 1.37079 1.45373 1.02584 0.85833 0.81672 0.78655 0.77073 1.19940 1.20947 1.20032 1.61154 1.58885 1.02854 1.03542 1.21661 0.94314 0.98536 0.90351 1.20900 0.97587 0.90877 0.94913 1.59237 1.52009 1.08542 1.09471 1.22356 0.94636 1.02867 0.91476 1.21746 0.95005 0.93354 0.94126 1.20950 0.99415 0.95769 0.94207 0.92244 1.21766 1.01722 0.93429 1.02336 1.22273 0.98043 0.88009 0.96934 0.93349 0.92445 0.94980 0.94065 0.94233 0.92926 0.96075 0.92233 0.96451 0.90874 0.91047 0.90250 0.95807 0.94811 0.89276 0.90680 0.93248 0.92108 0.92946 0.97470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.79 71.98 0.70 -4.21 16 2 C -0.10 -4.52 5.18 30.59 0.16 -4.36 16 3 C 0.22 11.31 1.55 44.17 0.07 11.38 16 4 H 0.00 0.16 7.98 -2.39 -0.02 0.14 16 5 C -0.55 -30.23 6.79 25.60 0.17 -30.06 16 6 H 0.04 2.51 6.91 -2.91 -0.02 2.49 16 7 C 0.02 1.34 5.17 84.66 0.44 1.77 16 8 N -0.91 -53.08 12.16 21.45 0.26 -52.82 16 9 Si 0.94 44.25 29.55 68.60 2.03 46.28 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.54 -22.94 3.26 -874.33 -2.85 -25.79 16 14 C 0.08 3.21 3.91 87.15 0.34 3.55 16 15 C 0.09 2.80 5.04 87.95 0.44 3.25 16 16 N -0.57 -16.06 4.32 -938.77 -4.06 -20.11 16 17 C 0.03 0.71 9.46 127.69 1.21 1.92 16 18 C 0.08 2.34 4.85 85.39 0.41 2.75 16 19 C -0.08 -2.60 2.25 -11.27 -0.03 -2.62 16 20 H 0.06 2.02 7.23 -2.38 -0.02 2.01 16 21 C -0.13 -3.26 8.81 71.98 0.63 -2.63 16 22 C 0.08 2.99 4.71 86.31 0.41 3.40 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 2.18 7.71 -2.39 -0.02 2.16 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 2.19 6.83 -2.39 -0.02 2.17 16 27 H 0.04 1.81 6.29 -2.39 -0.02 1.79 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 29 H 0.02 0.89 6.72 -2.39 -0.02 0.88 16 30 H 0.06 2.58 5.49 -2.39 -0.01 2.56 16 31 H 0.02 0.59 8.07 -2.39 -0.02 0.57 16 32 H 0.07 2.11 7.90 -2.39 -0.02 2.09 16 33 H 0.07 1.37 7.97 -2.39 -0.02 1.35 16 34 H 0.08 1.39 7.97 -2.38 -0.02 1.37 16 35 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 37 H 0.09 1.98 7.32 -2.39 -0.02 1.96 16 38 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 39 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 2.07 7.97 -2.39 -0.02 2.05 16 42 H 0.01 0.32 7.28 -2.38 -0.02 0.30 16 Total: -1.00 -59.78 312.43 1.29 -58.49 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.95 Total: 9.82 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 4.96 Total: -15.86 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -6.65 Total: -98.73 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -59.78 1.29 -58.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.118 kcal (2) G-P(sol) polarization free energy of solvation -59.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds