Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 H 1.09001 * 109.46458 * 57.26299 * 3 2 1 5 5 C 1.50698 * 109.46735 * 177.26195 * 3 2 1 6 6 H 1.08000 * 120.00036 * 120.00635 * 5 3 2 7 7 C 1.37876 * 119.99887 * 300.00015 * 5 3 2 8 8 N 1.31515 * 120.00528 * 359.72485 * 7 5 3 9 9 Si 1.86810 * 119.99922 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46859 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47153 * 120.00221 * 9 7 5 12 12 H 1.48503 * 109.46743 * 240.00215 * 9 7 5 13 13 N 1.46899 * 109.47261 * 297.26043 * 3 2 1 14 14 C 1.47684 * 111.00215 * 296.53593 * 13 3 2 15 15 C 1.50772 * 108.09407 * 151.98713 * 14 13 3 16 16 N 1.47747 * 111.91484 * 94.61472 * 15 14 13 17 17 C 1.46893 * 111.00327 * 192.80767 * 16 15 14 18 18 C 1.48077 * 113.78506 * 318.87640 * 16 15 14 19 19 C 1.50741 * 112.93251 * 318.28128 * 18 16 15 20 20 H 1.08995 * 109.56191 * 332.80866 * 19 18 16 21 21 C 1.53001 * 109.64523 * 212.54174 * 19 18 16 22 22 C 1.40083 * 110.99622 * 167.89247 * 13 3 2 23 23 H 1.09002 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46876 * 299.99226 * 1 2 3 25 25 H 1.08992 * 109.47146 * 59.99593 * 1 2 3 26 26 H 1.09004 * 109.47002 * 240.00097 * 2 1 3 27 27 H 1.09002 * 109.47222 * 120.00464 * 2 1 3 28 28 H 0.96995 * 120.00367 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.74210 * 271.64125 * 14 13 3 30 30 H 1.09007 * 109.73447 * 32.34188 * 14 13 3 31 31 H 1.08999 * 108.99537 * 333.98752 * 15 14 13 32 32 H 1.09000 * 108.99217 * 215.23532 * 15 14 13 33 33 H 1.09004 * 109.47141 * 187.59704 * 17 16 15 34 34 H 1.09002 * 109.47345 * 307.59590 * 17 16 15 35 35 H 1.09002 * 109.47281 * 67.59797 * 17 16 15 36 36 H 1.08996 * 108.78838 * 197.39367 * 18 16 15 37 37 H 1.08997 * 108.69820 * 79.11349 * 18 16 15 38 38 H 1.08999 * 109.47556 * 300.48812 * 21 19 18 39 39 H 1.09000 * 109.47083 * 60.48886 * 21 19 18 40 40 H 1.08999 * 109.47462 * 180.48607 * 21 19 18 41 41 H 1.08993 * 109.07680 * 308.67214 * 22 13 3 42 42 H 1.09002 * 109.06864 * 67.69757 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6371 1.9702 0.8645 5 6 3.5455 1.4430 0.0679 6 1 4.1216 1.8980 -0.7243 7 6 4.1873 0.8627 1.1413 8 7 3.4857 0.3136 2.1087 9 14 6.0535 0.8639 1.2258 10 1 6.6029 1.5446 0.0258 11 1 6.4932 1.5832 2.4483 12 1 6.5478 -0.5357 1.2701 13 7 1.6052 2.1157 -1.2311 14 6 2.2000 1.4766 -2.4223 15 6 1.2638 1.6896 -3.5847 16 7 1.6339 2.8785 -4.3801 17 6 0.5577 3.2457 -5.3099 18 6 2.0467 4.0406 -3.5604 19 6 1.1778 4.2402 -2.3449 20 1 0.1831 3.8384 -2.5374 21 6 1.0743 5.7331 -2.0262 22 6 1.8126 3.4985 -1.1472 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9373 -0.0950 2.8637 29 1 3.1666 1.9310 -2.6399 30 1 2.3267 0.4089 -2.2425 31 1 0.2503 1.8184 -3.2050 32 1 1.2911 0.8101 -4.2280 33 1 0.9059 4.0363 -5.9747 34 1 0.2737 2.3741 -5.8996 35 1 -0.3052 3.5994 -4.7455 36 1 2.0005 4.9386 -4.1763 37 1 3.0762 3.8909 -3.2354 38 1 2.0701 6.1343 -1.8378 39 1 0.6264 6.2549 -2.8719 40 1 0.4527 5.8737 -1.1420 41 1 1.3697 3.8697 -0.2231 42 1 2.8842 3.6977 -1.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707572134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = 6.075668 kcal Electronic energy + Delta-G solvation = -19062.312359 eV Core-core repulsion = 16463.187656 eV Total energy + Delta-G solvation = -2599.124703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35651 -36.16878 -33.84180 -32.54859 -31.10910 -29.01473 -26.79204 -26.62054 -24.58860 -23.57484 -22.41981 -20.41752 -19.51482 -18.64525 -16.43705 -15.73512 -15.55679 -14.73157 -14.56687 -14.16932 -13.89797 -12.99766 -12.87329 -12.60091 -12.56444 -12.30464 -11.98501 -11.87930 -11.49579 -11.29377 -11.21647 -11.16383 -10.97846 -10.74580 -10.65305 -10.34302 -10.23694 -10.15247 -9.79870 -9.55350 -9.33659 -9.01240 -8.36064 -7.85169 -7.03269 -5.97838 -4.11083 3.26258 3.35107 3.39004 4.26402 4.40505 4.95721 5.14306 5.26225 5.28030 5.42893 5.55030 5.68240 5.74774 5.88871 5.94944 5.96910 6.00034 6.12972 6.14344 6.24473 6.35057 6.36644 6.47107 6.49817 6.58285 6.64307 6.71512 6.88077 6.89606 7.13681 7.18569 7.37028 7.41620 7.47704 7.65920 7.80078 8.01449 8.18436 8.43354 8.65425 9.00179 9.56823 11.01162 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.008055 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.403193 B = 3475.068725 C = 3787.520702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.220 3.780 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.554 5.554 14 C 0.071 3.929 15 C 0.061 3.939 16 N -0.553 5.553 17 C 0.030 3.970 18 C 0.064 3.936 19 C -0.124 4.124 20 H 0.070 0.930 21 C -0.137 4.137 22 C 0.093 3.907 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 5.321 -9.281 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.114 3.886 4 H 0.053 0.947 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.277 5.277 14 C -0.057 4.057 15 C -0.066 4.066 16 N -0.278 5.278 17 C -0.119 4.119 18 C -0.064 4.064 19 C -0.145 4.145 20 H 0.089 0.911 21 C -0.195 4.195 22 C -0.037 4.037 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.329 5.039 -9.408 11.929 hybrid contribution 1.217 0.326 0.709 1.445 sum -4.113 5.365 -8.698 11.016 Atomic orbital electron populations 1.21697 0.98931 0.98321 1.00495 1.21636 0.92147 0.99272 1.01903 1.19245 0.92656 0.90934 0.85724 0.94659 1.21784 0.92656 1.37197 1.06230 0.92658 1.24909 0.97901 0.95103 0.95542 1.69884 1.34847 1.38026 1.09735 0.86634 0.86325 0.77726 0.77903 1.19924 1.21087 1.21000 1.59482 1.60947 1.02679 1.04640 1.21638 0.94938 1.00471 0.88664 1.22022 0.98982 0.91285 0.94314 1.62231 1.38882 1.05878 1.20761 1.22289 0.92931 1.00635 0.96020 1.21998 0.99535 0.91903 0.92946 1.21667 1.00348 0.95532 0.96921 0.91116 1.21732 1.01564 0.95376 1.00872 1.20799 0.97717 0.89288 0.95940 0.95659 0.94381 0.93424 0.94709 0.89076 0.92982 0.94098 0.89815 0.93770 0.91828 0.92156 0.92027 0.96023 0.92208 0.91138 0.92742 0.93377 0.92727 0.92325 0.95901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.78 37.16 0.36 -2.40 16 2 C -0.11 -2.59 5.11 -26.73 -0.14 -2.73 16 3 C 0.22 5.32 1.68 -68.86 -0.12 5.20 16 4 H 0.04 0.96 7.81 -51.93 -0.41 0.55 16 5 C -0.54 -14.28 7.31 -34.44 -0.25 -14.53 16 6 H 0.06 1.50 6.47 -52.49 -0.34 1.16 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.76 11.31 55.43 0.63 -24.14 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.55 -11.42 3.27 -233.09 -0.76 -12.19 16 14 C 0.07 1.38 4.17 -4.51 -0.02 1.36 16 15 C 0.06 1.02 5.07 -4.47 -0.02 0.99 16 16 N -0.55 -8.51 4.99 -243.98 -1.22 -9.72 16 17 C 0.03 0.38 9.37 60.06 0.56 0.94 16 18 C 0.06 0.97 4.72 -4.31 -0.02 0.95 16 19 C -0.12 -1.94 2.43 -90.96 -0.22 -2.16 16 20 H 0.07 1.17 6.68 -51.93 -0.35 0.82 16 21 C -0.14 -1.80 8.92 37.16 0.33 -1.47 16 22 C 0.09 1.80 4.11 -6.55 -0.03 1.77 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 26 H 0.03 0.79 6.03 -51.93 -0.31 0.48 16 27 H 0.09 2.39 6.01 -51.93 -0.31 2.07 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.04 0.86 6.14 -51.93 -0.32 0.54 16 30 H 0.08 1.73 5.66 -51.92 -0.29 1.44 16 31 H 0.04 0.76 7.08 -51.93 -0.37 0.39 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.02 0.27 7.68 -51.93 -0.40 -0.13 16 36 H 0.06 0.81 7.36 -51.93 -0.38 0.43 16 37 H 0.07 1.21 6.51 -51.93 -0.34 0.87 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 42 H 0.02 0.49 6.74 -51.93 -0.35 0.14 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -26.77 307.23 -8.87 -35.64 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.47 Total: -0.02 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 0.35 Total: -10.33 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.35 Total: -46.05 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.77 -8.87 -35.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.715 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds