Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.09005 * 109.47124 * 304.80040 * 3 2 1 5 5 C 1.50697 * 109.47221 * 184.79764 * 3 2 1 6 6 H 1.07997 * 119.99944 * 240.00030 * 5 3 2 7 7 C 1.37870 * 119.99942 * 59.99856 * 5 3 2 8 8 N 1.31513 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99850 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47325 * 60.00124 * 9 7 5 11 11 H 1.48503 * 109.47223 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47241 * 299.99527 * 9 7 5 13 13 N 1.46902 * 109.47139 * 64.79331 * 3 2 1 14 14 C 1.44262 * 110.99721 * 68.56159 * 13 3 2 15 15 C 1.53933 * 112.55386 * 217.13135 * 14 13 3 16 16 N 1.48202 * 112.77200 * 318.37212 * 15 14 13 17 17 C 1.46900 * 110.99452 * 191.68830 * 16 15 14 18 18 C 1.44247 * 114.26780 * 318.14035 * 16 15 14 19 19 C 1.54250 * 108.64509 * 93.39889 * 18 16 15 20 20 H 1.09001 * 108.99445 * 42.00105 * 19 18 16 21 21 C 1.52992 * 108.93266 * 160.79534 * 19 18 16 22 22 C 1.46139 * 111.90188 * 281.37986 * 19 18 16 23 23 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47116 * 300.00047 * 1 2 3 25 25 H 1.08998 * 109.46676 * 59.99764 * 1 2 3 26 26 H 1.08996 * 109.47119 * 119.99948 * 2 1 3 27 27 H 1.09002 * 109.46800 * 240.00371 * 2 1 3 28 28 H 0.97001 * 120.00118 * 179.97438 * 8 7 5 29 29 H 1.09005 * 108.86331 * 337.91940 * 14 13 3 30 30 H 1.08993 * 108.86904 * 96.33317 * 14 13 3 31 31 H 1.08998 * 108.81954 * 197.52620 * 15 14 13 32 32 H 1.09000 * 108.74097 * 79.16339 * 15 14 13 33 33 H 1.09003 * 109.46799 * 188.23926 * 17 16 15 34 34 H 1.08996 * 109.47391 * 308.23333 * 17 16 15 35 35 H 1.08997 * 109.47536 * 68.23994 * 17 16 15 36 36 H 1.08998 * 109.61180 * 333.64417 * 18 16 15 37 37 H 1.09008 * 109.74391 * 213.22491 * 18 16 15 38 38 H 1.09001 * 109.46967 * 182.35146 * 21 19 18 39 39 H 1.08997 * 109.47549 * 302.35514 * 21 19 18 40 40 H 1.09008 * 109.47002 * 62.35575 * 21 19 18 41 41 H 1.08994 * 108.93746 * 300.15997 * 22 19 18 42 42 H 1.09004 * 108.93384 * 181.55894 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6082 1.9806 -0.8439 5 6 3.5423 1.4441 -0.1188 6 1 4.1450 1.8896 0.6588 7 6 4.1473 0.8770 -1.2202 8 7 3.4135 0.3349 -2.1674 9 14 6.0096 0.8784 -1.3672 10 1 6.5974 0.1450 -0.2175 11 1 6.4067 0.2136 -2.6343 12 1 6.5051 2.2783 -1.3669 13 7 1.6472 2.1008 1.2531 14 6 2.3577 1.5400 2.3764 15 6 1.4841 1.4460 3.6403 16 7 0.6400 2.6469 3.8448 17 6 0.0377 2.6448 5.1847 18 6 1.3121 3.8958 3.5820 19 6 1.0421 4.3027 2.1189 20 1 -0.0047 4.1096 1.8843 21 6 1.3195 5.7989 1.9605 22 6 1.8840 3.5611 1.1825 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8392 -0.0638 -2.9425 29 1 2.7032 0.5407 2.1117 30 1 3.2244 2.1646 2.5927 31 1 2.1325 1.3202 4.5074 32 1 0.8380 0.5723 3.5553 33 1 -0.6884 3.4546 5.2578 34 1 -0.4625 1.6918 5.3568 35 1 0.8168 2.7868 5.9336 36 1 2.3842 3.7737 3.7359 37 1 0.9319 4.6668 4.2522 38 1 1.0913 6.1047 0.9394 39 1 0.6952 6.3599 2.6559 40 1 2.3699 5.9982 2.1733 41 1 2.9303 3.7614 1.4126 42 1 1.6742 3.9049 0.1696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707572141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = 6.340542 kcal Electronic energy + Delta-G solvation = -19021.845772 eV Core-core repulsion = 16422.732555 eV Total energy + Delta-G solvation = -2599.113217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.04957 -36.09351 -34.28624 -32.47310 -31.03925 -28.65953 -26.76666 -26.50228 -24.71388 -23.52812 -22.35714 -20.27427 -19.48061 -18.61852 -16.35147 -15.65061 -15.42132 -14.73988 -14.38608 -14.31766 -13.45732 -13.20827 -12.98001 -12.68586 -12.40656 -12.33759 -12.12616 -11.64293 -11.56693 -11.38495 -11.21739 -10.98849 -10.73178 -10.66435 -10.50458 -10.25924 -10.16597 -9.91545 -9.79348 -9.52531 -9.31622 -9.00972 -8.33640 -7.73547 -7.03363 -5.95736 -4.09774 3.28021 3.33562 3.35890 4.27380 4.40689 5.00791 5.25955 5.29031 5.34586 5.48968 5.64974 5.68359 5.75096 5.89145 5.92730 5.97678 6.00781 6.06350 6.19535 6.32171 6.42213 6.44867 6.54572 6.58272 6.66749 6.74326 6.79569 6.87318 7.01209 7.22252 7.27857 7.45863 7.51004 7.66178 7.69677 7.82045 8.09980 8.22479 8.41026 8.59054 9.02461 9.58024 11.02707 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.008047 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.466074 B = 3478.938082 C = 3824.421254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.515 5.515 14 C 0.067 3.933 15 C 0.072 3.928 16 N -0.543 5.543 17 C 0.033 3.967 18 C 0.077 3.923 19 C -0.083 4.083 20 H 0.080 0.920 21 C -0.144 4.144 22 C 0.073 3.927 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.014 0.986 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.024 0.976 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 5.035 10.003 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.063 4.063 15 C -0.055 4.055 16 N -0.268 5.268 17 C -0.115 4.115 18 C -0.051 4.051 19 C -0.102 4.102 20 H 0.099 0.901 21 C -0.203 4.203 22 C -0.055 4.055 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.337 4.804 9.545 11.944 hybrid contribution 2.695 0.134 0.323 2.717 sum -2.642 4.938 9.868 11.347 Atomic orbital electron populations 1.21697 0.98740 0.98239 1.00802 1.21586 0.92402 0.99100 1.01597 1.19384 0.92710 0.91209 0.85844 0.94503 1.21779 0.92904 1.38021 1.05565 0.92904 1.24911 0.97658 0.95094 0.95720 1.69866 1.34810 1.38215 1.09409 0.86772 0.86431 0.78145 0.77316 1.20409 1.21238 1.20465 1.61786 1.56149 1.01575 1.04211 1.21704 0.92927 1.01127 0.90558 1.22586 0.94440 0.91979 0.96522 1.60306 1.37935 1.02349 1.26175 1.22329 0.98208 1.02014 0.88964 1.21758 0.96305 0.90409 0.96657 1.20188 1.02089 0.93350 0.94602 0.90136 1.21839 1.00951 0.96129 1.01368 1.20830 0.96530 0.89722 0.98460 0.95863 0.92877 0.94431 0.95100 0.89141 0.92867 0.90116 0.96080 0.96245 0.91356 0.92022 0.91962 0.96775 0.94967 0.92473 0.92657 0.93251 0.93274 0.95811 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.57 5.18 -26.73 -0.14 -2.71 16 3 C 0.21 5.26 1.65 -68.87 -0.11 5.15 16 4 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 5 C -0.54 -14.43 7.18 -34.44 -0.25 -14.67 16 6 H 0.05 1.42 6.61 -52.49 -0.35 1.07 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.18 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -10.87 3.80 -232.61 -0.88 -11.75 16 14 C 0.07 1.33 3.69 -4.75 -0.02 1.31 16 15 C 0.07 1.22 5.75 -2.62 -0.02 1.20 16 16 N -0.54 -8.57 4.40 -242.55 -1.07 -9.64 16 17 C 0.03 0.42 9.30 60.06 0.56 0.98 16 18 C 0.08 1.18 4.77 -4.59 -0.02 1.15 16 19 C -0.08 -1.33 2.60 -93.23 -0.24 -1.57 16 20 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 21 C -0.14 -1.93 9.01 37.15 0.33 -1.59 16 22 C 0.07 1.42 3.72 -6.41 -0.02 1.40 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 27 H 0.09 2.40 5.96 -51.93 -0.31 2.09 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.08 1.75 5.52 -51.93 -0.29 1.46 16 30 H 0.02 0.44 6.11 -51.93 -0.32 0.12 16 31 H 0.02 0.30 8.04 -51.93 -0.42 -0.12 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.03 0.52 6.96 -51.93 -0.36 0.16 16 37 H 0.06 0.76 7.40 -51.92 -0.38 0.37 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 42 H 0.06 1.25 7.61 -51.93 -0.40 0.86 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -27.13 311.11 -9.00 -36.12 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.68 Total: -1.24 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 0.34 Total: -10.09 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -1.32 Total: -45.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.13 -9.00 -36.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.463 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds