Wall clock time and date at job start Mon Mar 30 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.09005 * 109.47124 * 304.80040 * 3 2 1 5 5 C 1.50697 * 109.47221 * 184.79764 * 3 2 1 6 6 H 1.07997 * 119.99944 * 240.00030 * 5 3 2 7 7 C 1.37870 * 119.99942 * 59.99856 * 5 3 2 8 8 N 1.31513 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99850 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47325 * 60.00124 * 9 7 5 11 11 H 1.48503 * 109.47223 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47241 * 299.99527 * 9 7 5 13 13 N 1.46902 * 109.47139 * 64.79331 * 3 2 1 14 14 C 1.44262 * 110.99721 * 68.56159 * 13 3 2 15 15 C 1.53933 * 112.55386 * 217.13135 * 14 13 3 16 16 N 1.48202 * 112.77200 * 318.37212 * 15 14 13 17 17 C 1.46900 * 110.99452 * 191.68830 * 16 15 14 18 18 C 1.44247 * 114.26780 * 318.14035 * 16 15 14 19 19 C 1.54250 * 108.64509 * 93.39889 * 18 16 15 20 20 H 1.09001 * 108.99445 * 42.00105 * 19 18 16 21 21 C 1.52992 * 108.93266 * 160.79534 * 19 18 16 22 22 C 1.46139 * 111.90188 * 281.37986 * 19 18 16 23 23 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47116 * 300.00047 * 1 2 3 25 25 H 1.08998 * 109.46676 * 59.99764 * 1 2 3 26 26 H 1.08996 * 109.47119 * 119.99948 * 2 1 3 27 27 H 1.09002 * 109.46800 * 240.00371 * 2 1 3 28 28 H 0.97001 * 120.00118 * 179.97438 * 8 7 5 29 29 H 1.09005 * 108.86331 * 337.91940 * 14 13 3 30 30 H 1.08993 * 108.86904 * 96.33317 * 14 13 3 31 31 H 1.08998 * 108.81954 * 197.52620 * 15 14 13 32 32 H 1.09000 * 108.74097 * 79.16339 * 15 14 13 33 33 H 1.09003 * 109.46799 * 188.23926 * 17 16 15 34 34 H 1.08996 * 109.47391 * 308.23333 * 17 16 15 35 35 H 1.08997 * 109.47536 * 68.23994 * 17 16 15 36 36 H 1.08998 * 109.61180 * 333.64417 * 18 16 15 37 37 H 1.09008 * 109.74391 * 213.22491 * 18 16 15 38 38 H 1.09001 * 109.46967 * 182.35146 * 21 19 18 39 39 H 1.08997 * 109.47549 * 302.35514 * 21 19 18 40 40 H 1.09008 * 109.47002 * 62.35575 * 21 19 18 41 41 H 1.08994 * 108.93746 * 300.15997 * 22 19 18 42 42 H 1.09004 * 108.93384 * 181.55894 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6082 1.9806 -0.8439 5 6 3.5423 1.4441 -0.1188 6 1 4.1450 1.8896 0.6588 7 6 4.1473 0.8770 -1.2202 8 7 3.4135 0.3349 -2.1674 9 14 6.0096 0.8784 -1.3672 10 1 6.5974 0.1450 -0.2175 11 1 6.4067 0.2136 -2.6343 12 1 6.5051 2.2783 -1.3669 13 7 1.6472 2.1008 1.2531 14 6 2.3577 1.5400 2.3764 15 6 1.4841 1.4460 3.6403 16 7 0.6400 2.6469 3.8448 17 6 0.0377 2.6448 5.1847 18 6 1.3121 3.8958 3.5820 19 6 1.0421 4.3027 2.1189 20 1 -0.0047 4.1096 1.8843 21 6 1.3195 5.7989 1.9605 22 6 1.8840 3.5611 1.1825 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8392 -0.0638 -2.9425 29 1 2.7032 0.5407 2.1117 30 1 3.2244 2.1646 2.5927 31 1 2.1325 1.3202 4.5074 32 1 0.8380 0.5723 3.5553 33 1 -0.6884 3.4546 5.2578 34 1 -0.4625 1.6918 5.3568 35 1 0.8168 2.7868 5.9336 36 1 2.3842 3.7737 3.7359 37 1 0.9319 4.6668 4.2522 38 1 1.0913 6.1047 0.9394 39 1 0.6952 6.3599 2.6559 40 1 2.3699 5.9982 2.1733 41 1 2.9303 3.7614 1.4126 42 1 1.6742 3.9049 0.1696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707572141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:25 Heat of formation + Delta-G solvation = -10.330137 kcal Electronic energy + Delta-G solvation = -19022.568667 eV Core-core repulsion = 16422.732555 eV Total energy + Delta-G solvation = -2599.836112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54637 -37.68167 -35.65975 -34.36565 -32.87217 -30.13984 -28.39097 -27.81121 -26.31636 -25.09329 -23.97340 -21.85692 -20.95536 -20.33244 -18.27275 -17.28902 -16.95116 -16.41943 -15.84649 -15.73442 -15.00051 -14.82329 -14.51417 -14.13235 -13.97112 -13.63704 -13.53921 -13.28462 -13.09895 -12.83570 -12.75915 -12.67801 -12.45321 -12.26056 -12.07317 -11.86482 -11.68713 -11.50439 -11.48538 -11.26014 -11.14513 -10.89554 -10.42823 -8.98136 -8.81185 -8.01592 -6.25671 1.36334 1.37123 1.44420 2.39101 3.05128 3.15477 3.44363 4.03111 4.09813 4.27890 4.30847 4.40159 4.56413 4.60335 4.62511 4.75636 4.76725 4.80212 4.81719 4.86387 4.93476 4.97821 5.06147 5.09157 5.11640 5.22741 5.28425 5.36257 5.39356 5.48478 5.52966 5.59450 5.68742 5.83011 6.09977 6.21808 6.33550 6.45326 6.52184 6.77826 6.99377 7.45778 8.91999 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.008047 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.466074 B = 3478.938082 C = 3824.421254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.511 5.511 14 C 0.073 3.927 15 C 0.082 3.918 16 N -0.560 5.560 17 C 0.034 3.966 18 C 0.082 3.918 19 C -0.079 4.079 20 H 0.071 0.929 21 C -0.137 4.137 22 C 0.079 3.921 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.007 0.993 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 5.721 11.922 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.018 0.982 5 C -0.591 4.591 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.233 5.233 14 C -0.057 4.057 15 C -0.046 4.046 16 N -0.284 5.284 17 C -0.113 4.113 18 C -0.047 4.047 19 C -0.099 4.099 20 H 0.089 0.911 21 C -0.196 4.196 22 C -0.049 4.049 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.784 5.498 11.487 13.986 hybrid contribution 2.822 -0.065 -0.272 2.836 sum -2.961 5.433 11.214 12.808 Atomic orbital electron populations 1.21536 0.96321 0.99588 1.00601 1.21418 0.94480 0.98068 1.00090 1.19153 0.91503 0.91577 0.86345 0.98198 1.21984 0.94070 1.37709 1.05362 0.93707 1.25599 1.01666 0.94938 0.95538 1.69993 1.36292 1.38795 1.09763 0.85840 0.81636 0.78090 0.77426 1.19902 1.20731 1.20276 1.61851 1.55909 1.02381 1.03189 1.21662 0.93329 0.99320 0.91423 1.22383 0.94372 0.92838 0.94982 1.60282 1.37634 1.01913 1.28590 1.22389 0.98583 1.03118 0.87227 1.21734 0.95731 0.91064 0.96137 1.20129 1.00395 0.94677 0.94649 0.91057 1.21778 1.01580 0.94153 1.02073 1.20875 0.96410 0.89082 0.98516 0.93709 0.92378 0.95177 0.95059 0.92035 0.92894 0.92288 0.97334 0.94619 0.91298 0.90444 0.91330 0.95735 0.96173 0.89593 0.92899 0.90571 0.93187 0.97456 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.80 71.98 0.71 -4.39 16 2 C -0.10 -4.95 5.18 30.60 0.16 -4.79 16 3 C 0.22 11.24 1.65 44.17 0.07 11.31 16 4 H 0.00 0.00 7.77 -2.38 -0.02 -0.01 16 5 C -0.55 -30.18 7.18 25.60 0.18 -30.00 16 6 H 0.04 2.47 6.61 -2.91 -0.02 2.45 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -52.28 11.29 21.44 0.24 -52.04 16 9 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.51 -21.97 3.80 -889.84 -3.38 -25.35 16 14 C 0.07 2.90 3.69 87.11 0.32 3.22 16 15 C 0.08 2.62 5.75 86.37 0.50 3.12 16 16 N -0.56 -16.25 4.40 -921.29 -4.05 -20.31 16 17 C 0.03 0.74 9.30 127.69 1.19 1.93 16 18 C 0.08 2.29 4.77 87.22 0.42 2.71 16 19 C -0.08 -2.45 2.60 -12.48 -0.03 -2.48 16 20 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 21 C -0.14 -3.41 9.01 71.98 0.65 -2.76 16 22 C 0.08 3.15 3.72 83.96 0.31 3.46 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.33 7.75 -2.39 -0.02 2.31 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 1.48 6.38 -2.39 -0.02 1.46 16 27 H 0.06 3.36 5.96 -2.39 -0.01 3.34 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 2.60 5.52 -2.38 -0.01 2.58 16 30 H 0.01 0.35 6.11 -2.39 -0.01 0.34 16 31 H 0.04 1.03 8.04 -2.39 -0.02 1.01 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 34 H 0.07 1.39 8.10 -2.39 -0.02 1.38 16 35 H 0.02 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.02 0.61 6.96 -2.39 -0.02 0.60 16 37 H 0.09 1.93 7.40 -2.38 -0.02 1.92 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.01 0.31 7.19 -2.39 -0.02 0.29 16 42 H 0.04 1.71 7.61 -2.38 -0.02 1.69 16 Total: -1.00 -59.08 311.11 0.71 -58.37 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.95 Total: 10.38 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.92 Total: -16.96 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -7.19 Total: -97.69 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -59.08 0.71 -58.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707572141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.043 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds