Wall clock time and date at job start Mon Mar 30 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 H 1.08998 * 109.47212 * 303.34760 * 3 2 1 5 5 C 1.50696 * 109.47372 * 183.34437 * 3 2 1 6 6 H 1.07999 * 120.00333 * 245.44901 * 5 3 2 7 7 C 1.37880 * 119.99886 * 65.44803 * 5 3 2 8 8 N 1.31513 * 119.99838 * 196.14379 * 7 5 3 9 9 Si 1.86800 * 119.99988 * 16.14133 * 7 5 3 10 10 H 1.48504 * 109.46732 * 87.55643 * 9 7 5 11 11 H 1.48500 * 109.46752 * 207.55477 * 9 7 5 12 12 H 1.48496 * 109.46886 * 327.55518 * 9 7 5 13 13 N 1.46904 * 109.47283 * 63.34424 * 3 2 1 14 14 C 1.46900 * 111.00199 * 261.85802 * 13 3 2 15 15 H 1.09002 * 109.52056 * 26.92661 * 14 13 3 16 16 C 1.53121 * 109.57309 * 266.77477 * 14 13 3 17 17 C 1.53035 * 109.27902 * 182.40837 * 16 14 13 18 18 N 1.46851 * 109.52213 * 59.17683 * 17 16 14 19 19 C 1.46846 * 111.19756 * 298.25341 * 18 17 16 20 20 C 1.53004 * 109.45960 * 181.75907 * 19 18 17 21 21 C 1.52997 * 109.46660 * 301.74272 * 19 18 17 22 22 C 1.53045 * 109.51975 * 61.74669 * 19 18 17 23 23 H 1.09001 * 109.46582 * 177.95397 * 1 2 3 24 24 H 1.09004 * 109.47124 * 297.95244 * 1 2 3 25 25 H 1.08995 * 109.47454 * 57.95412 * 1 2 3 26 26 H 1.09002 * 109.47322 * 240.00599 * 2 1 3 27 27 H 1.08998 * 109.47320 * 119.99798 * 2 1 3 28 28 H 0.97005 * 119.99939 * 179.97438 * 8 7 5 29 29 H 1.00906 * 110.99752 * 25.80331 * 13 3 2 30 30 H 1.08995 * 109.50556 * 62.46024 * 16 14 13 31 31 H 1.09008 * 109.50098 * 302.34517 * 16 14 13 32 32 H 1.08997 * 109.46443 * 299.16000 * 17 16 14 33 33 H 1.09004 * 109.45968 * 179.18911 * 17 16 14 34 34 H 1.00900 * 110.99426 * 174.16273 * 18 17 16 35 35 H 1.09000 * 109.46888 * 60.00376 * 20 19 18 36 36 H 1.09002 * 109.46543 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.47103 * 300.00349 * 20 19 18 38 38 H 1.09001 * 109.47069 * 59.99686 * 21 19 18 39 39 H 1.08991 * 109.47095 * 180.02562 * 21 19 18 40 40 H 1.09009 * 109.46524 * 299.99830 * 21 19 18 41 41 H 1.09002 * 109.50342 * 60.76175 * 22 19 18 42 42 H 1.08996 * 109.50165 * 180.83961 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6285 1.9734 -0.8584 5 6 3.5447 1.4434 -0.0829 6 1 4.1309 1.8158 0.7442 7 6 4.1730 0.9689 -1.2147 8 7 5.4533 0.6702 -1.1797 9 14 3.2058 0.7502 -2.7978 10 1 3.2162 2.0224 -3.5639 11 1 3.8276 -0.3238 -3.6133 12 1 1.8050 0.3784 -2.4746 13 7 1.6174 2.1113 1.2378 14 6 0.4104 2.9184 1.0145 15 1 -0.1607 2.4982 0.1866 16 6 0.8106 4.3583 0.6812 17 6 -0.4515 5.2065 0.5091 18 7 -1.2384 5.1725 1.7485 19 6 -1.6742 3.8060 2.0635 20 6 -2.5253 3.8227 3.3348 21 6 -2.5035 3.2549 0.9019 22 6 -0.4485 2.9160 2.2820 23 1 -0.3632 -1.0271 -0.0367 24 1 -0.3633 0.4817 0.9078 25 1 -0.3634 0.5452 -0.8710 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8953 0.3360 -1.9759 29 1 1.4728 1.4422 1.9791 30 1 1.3866 4.3711 -0.2440 31 1 1.4146 4.7651 1.4923 32 1 -1.0483 4.8074 -0.3110 33 1 -0.1698 6.2356 0.2859 34 1 -2.0268 5.7998 1.6935 35 1 -3.3988 4.4559 3.1790 36 1 -2.8485 2.8084 3.5689 37 1 -1.9347 4.2157 4.1623 38 1 -1.8974 3.2433 -0.0040 39 1 -2.8274 2.2408 1.1358 40 1 -3.3771 3.8882 0.7466 41 1 0.1357 3.3001 3.1183 42 1 -0.7721 1.8985 2.5011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709377377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:16 Heat of formation + Delta-G solvation = -8.765737 kcal Electronic energy + Delta-G solvation = -18833.537167 eV Core-core repulsion = 16233.768892 eV Total energy + Delta-G solvation = -2599.768274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.61445 -36.52575 -33.10634 -32.40429 -31.59594 -29.17599 -27.46596 -27.17261 -26.25072 -22.84491 -22.40492 -20.64530 -19.84787 -18.40048 -16.74620 -15.98415 -15.20197 -15.16132 -14.59515 -14.24850 -13.78355 -13.62021 -13.10415 -12.94258 -12.83600 -12.66171 -12.18619 -11.92675 -11.87871 -11.73569 -11.45515 -11.39042 -11.02889 -10.85058 -10.78480 -10.59852 -10.54467 -10.20226 -9.88916 -9.84678 -9.35627 -9.21679 -8.33696 -8.31181 -7.26978 -6.02600 -3.93151 3.29432 3.38148 3.40341 4.20510 4.46451 4.74406 4.86057 5.04122 5.17324 5.24251 5.39770 5.47667 5.50464 5.58348 5.64709 5.74167 5.77593 5.79714 5.84624 5.90137 6.00209 6.02450 6.04423 6.14376 6.22002 6.33608 6.40050 6.52145 6.58086 6.59623 6.81741 6.85218 6.97612 7.18593 7.24559 7.48268 7.82403 8.04298 8.44482 8.77976 9.15680 9.64899 11.11085 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033090 B = 0.006980 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.981709 B = 4010.619914 C = 4178.976936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.195 3.805 4 H 0.022 0.978 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.857 3.143 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.257 1.257 13 N -0.668 5.668 14 C 0.085 3.915 15 H 0.041 0.959 16 C -0.103 4.103 17 C 0.055 3.945 18 N -0.676 5.676 19 C 0.112 3.888 20 C -0.138 4.138 21 C -0.184 4.184 22 C -0.108 4.108 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.334 0.666 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 5.152 4.599 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C 0.086 3.914 4 H 0.040 0.960 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.685 3.315 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.182 1.182 13 N -0.297 5.297 14 C -0.025 4.025 15 H 0.059 0.941 16 C -0.142 4.142 17 C -0.075 4.075 18 N -0.307 5.307 19 C 0.020 3.980 20 C -0.196 4.196 21 C -0.243 4.243 22 C -0.147 4.147 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.508 5.576 4.814 17.169 hybrid contribution -1.798 -1.044 -1.875 2.800 sum -17.306 4.532 2.939 18.129 Atomic orbital electron populations 1.21967 0.98669 1.00029 1.00499 1.22639 0.92639 1.01937 1.01971 1.19590 0.96411 0.87842 0.87586 0.96004 1.20991 0.88940 1.40551 1.03036 0.90209 1.24895 0.94692 0.94844 0.98569 1.69979 1.10566 1.43928 1.28872 0.87313 0.81517 0.77898 0.84808 1.20668 1.21579 1.18161 1.60629 1.31266 1.28518 1.09291 1.21652 0.90561 0.94723 0.95569 0.94117 1.21577 0.95718 0.94248 1.02655 1.22013 0.95280 1.00182 0.89987 1.60517 1.26411 1.07556 1.36235 1.20878 0.94045 0.88920 0.94157 1.21822 0.98961 1.01521 0.97247 1.22605 0.99863 1.01529 1.00256 1.21870 0.95328 0.98085 0.99395 0.94121 0.93446 0.93884 0.92147 0.92403 0.92864 0.85465 0.91471 0.90754 0.95322 0.91141 0.84868 0.93077 0.92321 0.91744 0.91736 0.92251 0.93196 0.90531 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.64 37.16 0.32 -2.36 16 2 C -0.15 -3.24 4.63 -26.73 -0.12 -3.36 16 3 C 0.19 4.51 1.69 -68.86 -0.12 4.39 16 4 H 0.02 0.53 6.14 -51.93 -0.32 0.21 16 5 C -0.50 -13.99 9.26 -34.44 -0.32 -14.31 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.07 2.06 5.33 -17.82 -0.10 1.96 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.86 21.27 25.86 -169.99 -4.40 16.87 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -5.98 5.53 56.52 0.31 -5.67 16 13 N -0.67 -13.44 5.91 -100.83 -0.60 -14.04 16 14 C 0.09 1.43 1.07 -67.59 -0.07 1.36 16 15 H 0.04 0.71 4.44 -51.93 -0.23 0.48 16 16 C -0.10 -1.72 5.71 -26.65 -0.15 -1.88 16 17 C 0.05 0.73 6.25 -3.83 -0.02 0.71 16 18 N -0.68 -8.17 6.31 -99.99 -0.63 -8.80 16 19 C 0.11 1.32 0.95 -131.61 -0.12 1.20 16 20 C -0.14 -1.37 8.71 37.16 0.32 -1.05 16 21 C -0.18 -2.10 7.86 37.16 0.29 -1.81 16 22 C -0.11 -1.52 4.02 -26.65 -0.11 -1.63 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.75 5.75 -51.93 -0.30 0.45 16 25 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 26 H 0.06 1.38 5.02 -51.93 -0.26 1.12 16 27 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.33 6.24 7.58 -39.29 -0.30 5.94 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.03 0.38 6.19 -51.93 -0.32 0.06 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.33 3.38 8.79 -39.29 -0.35 3.04 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.84 4.80 -51.93 -0.25 0.59 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.79 7.35 -51.93 -0.38 0.41 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -29.51 305.73 -7.85 -37.36 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.41 Total: 7.47 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.20 Total: -16.76 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.45 Total: -49.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.40 Total: 16.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.51 -7.85 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709377377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.596 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds