Wall clock time and date at job start Mon Mar 30 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 H 1.08998 * 109.47212 * 303.34760 * 3 2 1 5 5 C 1.50696 * 109.47372 * 183.34437 * 3 2 1 6 6 H 1.07999 * 120.00333 * 245.44901 * 5 3 2 7 7 C 1.37880 * 119.99886 * 65.44803 * 5 3 2 8 8 N 1.31513 * 119.99838 * 196.14379 * 7 5 3 9 9 Si 1.86800 * 119.99988 * 16.14133 * 7 5 3 10 10 H 1.48504 * 109.46732 * 87.55643 * 9 7 5 11 11 H 1.48500 * 109.46752 * 207.55477 * 9 7 5 12 12 H 1.48496 * 109.46886 * 327.55518 * 9 7 5 13 13 N 1.46904 * 109.47283 * 63.34424 * 3 2 1 14 14 C 1.46900 * 111.00199 * 261.85802 * 13 3 2 15 15 H 1.09002 * 109.52056 * 26.92661 * 14 13 3 16 16 C 1.53121 * 109.57309 * 266.77477 * 14 13 3 17 17 C 1.53035 * 109.27902 * 182.40837 * 16 14 13 18 18 N 1.46851 * 109.52213 * 59.17683 * 17 16 14 19 19 C 1.46846 * 111.19756 * 298.25341 * 18 17 16 20 20 C 1.53004 * 109.45960 * 181.75907 * 19 18 17 21 21 C 1.52997 * 109.46660 * 301.74272 * 19 18 17 22 22 C 1.53045 * 109.51975 * 61.74669 * 19 18 17 23 23 H 1.09001 * 109.46582 * 177.95397 * 1 2 3 24 24 H 1.09004 * 109.47124 * 297.95244 * 1 2 3 25 25 H 1.08995 * 109.47454 * 57.95412 * 1 2 3 26 26 H 1.09002 * 109.47322 * 240.00599 * 2 1 3 27 27 H 1.08998 * 109.47320 * 119.99798 * 2 1 3 28 28 H 0.97005 * 119.99939 * 179.97438 * 8 7 5 29 29 H 1.00906 * 110.99752 * 25.80331 * 13 3 2 30 30 H 1.08995 * 109.50556 * 62.46024 * 16 14 13 31 31 H 1.09008 * 109.50098 * 302.34517 * 16 14 13 32 32 H 1.08997 * 109.46443 * 299.16000 * 17 16 14 33 33 H 1.09004 * 109.45968 * 179.18911 * 17 16 14 34 34 H 1.00900 * 110.99426 * 174.16273 * 18 17 16 35 35 H 1.09000 * 109.46888 * 60.00376 * 20 19 18 36 36 H 1.09002 * 109.46543 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.47103 * 300.00349 * 20 19 18 38 38 H 1.09001 * 109.47069 * 59.99686 * 21 19 18 39 39 H 1.08991 * 109.47095 * 180.02562 * 21 19 18 40 40 H 1.09009 * 109.46524 * 299.99830 * 21 19 18 41 41 H 1.09002 * 109.50342 * 60.76175 * 22 19 18 42 42 H 1.08996 * 109.50165 * 180.83961 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6285 1.9734 -0.8584 5 6 3.5447 1.4434 -0.0829 6 1 4.1309 1.8158 0.7442 7 6 4.1730 0.9689 -1.2147 8 7 5.4533 0.6702 -1.1797 9 14 3.2058 0.7502 -2.7978 10 1 3.2162 2.0224 -3.5639 11 1 3.8276 -0.3238 -3.6133 12 1 1.8050 0.3784 -2.4746 13 7 1.6174 2.1113 1.2378 14 6 0.4104 2.9184 1.0145 15 1 -0.1607 2.4982 0.1866 16 6 0.8106 4.3583 0.6812 17 6 -0.4515 5.2065 0.5091 18 7 -1.2384 5.1725 1.7485 19 6 -1.6742 3.8060 2.0635 20 6 -2.5253 3.8227 3.3348 21 6 -2.5035 3.2549 0.9019 22 6 -0.4485 2.9160 2.2820 23 1 -0.3632 -1.0271 -0.0367 24 1 -0.3633 0.4817 0.9078 25 1 -0.3634 0.5452 -0.8710 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.8953 0.3360 -1.9759 29 1 1.4728 1.4422 1.9791 30 1 1.3866 4.3711 -0.2440 31 1 1.4146 4.7651 1.4923 32 1 -1.0483 4.8074 -0.3110 33 1 -0.1698 6.2356 0.2859 34 1 -2.0268 5.7998 1.6935 35 1 -3.3988 4.4559 3.1790 36 1 -2.8485 2.8084 3.5689 37 1 -1.9347 4.2157 4.1623 38 1 -1.8974 3.2433 -0.0040 39 1 -2.8274 2.2408 1.1358 40 1 -3.3771 3.8882 0.7466 41 1 0.1357 3.3001 3.1183 42 1 -0.7721 1.8985 2.5011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709377377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:16 Heat of formation + Delta-G solvation = -30.755532 kcal Electronic energy + Delta-G solvation = -18834.490716 eV Core-core repulsion = 16233.768892 eV Total energy + Delta-G solvation = -2600.721824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76170 -38.09270 -34.73766 -33.86609 -33.12013 -30.67878 -28.79739 -28.18233 -27.64031 -24.45257 -23.76835 -21.97681 -21.52898 -19.57159 -18.76047 -17.10449 -16.88780 -16.34935 -16.07767 -15.73745 -15.12126 -14.85712 -14.75721 -14.41119 -14.10723 -13.85519 -13.59273 -13.47090 -13.01750 -12.75181 -12.72142 -12.64245 -12.56691 -12.35567 -12.32703 -12.00107 -11.84035 -11.69688 -11.53141 -11.35349 -11.17990 -10.92568 -10.49715 -9.27904 -8.90258 -8.27066 -6.22218 1.31122 1.34595 1.43094 2.35268 3.05764 3.26511 3.45258 3.84346 3.95840 4.11976 4.27127 4.29710 4.34145 4.38803 4.45006 4.47771 4.56959 4.65894 4.73292 4.80372 4.83630 4.92327 4.96540 5.00115 5.07882 5.08327 5.16021 5.18756 5.25346 5.28531 5.35101 5.41627 5.52530 5.58203 5.75573 6.14025 6.18739 6.63668 6.78543 6.82986 6.87444 7.40457 8.90689 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033090 B = 0.006980 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.981709 B = 4010.619914 C = 4178.976936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.204 3.796 4 H 0.017 0.983 5 C -0.504 4.504 6 H 0.030 0.970 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.229 1.229 13 N -0.683 5.683 14 C 0.088 3.912 15 H 0.042 0.958 16 C -0.104 4.104 17 C 0.064 3.936 18 N -0.681 5.681 19 C 0.112 3.888 20 C -0.133 4.133 21 C -0.180 4.180 22 C -0.103 4.103 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 5.177 4.351 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 C 0.094 3.906 4 H 0.035 0.965 5 C -0.542 4.542 6 H 0.048 0.952 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.152 1.152 13 N -0.313 5.313 14 C -0.021 4.021 15 H 0.060 0.940 16 C -0.143 4.143 17 C -0.065 4.065 18 N -0.313 5.313 19 C 0.021 3.979 20 C -0.190 4.190 21 C -0.239 4.239 22 C -0.141 4.141 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.286 5.616 4.588 20.605 hybrid contribution -0.542 -0.995 -1.678 2.025 sum -19.829 4.621 2.910 20.567 Atomic orbital electron populations 1.21856 0.95031 1.01848 1.01392 1.22481 0.95832 0.99653 1.01022 1.19322 0.93006 0.89573 0.88692 0.96547 1.21295 0.91755 1.39639 1.01559 0.95198 1.25733 0.95647 0.94679 1.02224 1.70130 1.12739 1.45801 1.29963 0.86227 0.81356 0.77810 0.79755 1.20477 1.21351 1.15231 1.60454 1.33891 1.28693 1.08273 1.21683 0.89490 0.93749 0.97221 0.93969 1.21546 0.97142 0.95146 1.00471 1.21852 0.93823 1.00001 0.90861 1.60439 1.27252 1.08236 1.35406 1.20895 0.93212 0.88220 0.95595 1.21776 0.99010 1.02539 0.95708 1.22557 1.00027 1.02341 0.98951 1.21816 0.95726 0.99434 0.97117 0.91790 0.91940 0.93668 0.93706 0.92893 0.92792 0.84842 0.94144 0.92692 0.94621 0.90034 0.83034 0.91366 0.91373 0.92381 0.93399 0.91589 0.91435 0.91829 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.64 71.98 0.62 -3.89 16 2 C -0.15 -6.18 4.63 30.60 0.14 -6.04 16 3 C 0.20 9.46 1.69 44.17 0.07 9.53 16 4 H 0.02 0.79 6.14 -2.39 -0.01 0.78 16 5 C -0.50 -29.49 9.26 25.60 0.24 -29.25 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.84 5.33 84.66 0.45 1.29 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.92 44.32 25.86 68.60 1.77 46.09 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.23 -9.89 5.53 99.48 0.55 -9.33 16 13 N -0.68 -27.68 5.91 -472.91 -2.79 -30.47 16 14 C 0.09 2.88 1.07 44.99 0.05 2.93 16 15 H 0.04 1.39 4.44 -2.39 -0.01 1.38 16 16 C -0.10 -3.47 5.71 30.65 0.17 -3.30 16 17 C 0.06 1.60 6.25 86.32 0.54 2.14 16 18 N -0.68 -14.64 6.31 -470.27 -2.97 -17.61 16 19 C 0.11 2.31 0.95 3.55 0.00 2.32 16 20 C -0.13 -2.16 8.71 71.98 0.63 -1.53 16 21 C -0.18 -3.43 7.86 71.98 0.57 -2.86 16 22 C -0.10 -2.67 4.02 30.65 0.12 -2.55 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.76 5.75 -2.38 -0.01 1.74 16 25 H 0.04 1.40 7.90 -2.39 -0.02 1.38 16 26 H 0.04 1.96 5.02 -2.39 -0.01 1.95 16 27 H 0.05 2.19 8.06 -2.39 -0.02 2.17 16 28 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 29 H 0.33 12.63 7.58 -89.69 -0.68 11.95 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.99 16 32 H 0.04 0.85 6.19 -2.39 -0.01 0.84 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.35 5.86 8.79 -89.69 -0.79 5.07 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.08 4.80 -2.39 -0.01 1.07 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.68 7.35 -2.39 -0.02 1.66 16 Total: -1.00 -66.45 305.73 -0.70 -67.16 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.62 Total: 26.06 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.61 Total: -31.22 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -5.46 Total: -108.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.77 Total: 46.09 kcal Total: -66.45 -0.70 -67.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709377377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.400 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds