Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46703 * 2 1 4 4 N 1.46500 * 109.47166 * 240.00440 * 2 1 3 5 5 C 1.36941 * 119.99942 * 180.87390 * 4 2 1 6 6 H 1.07995 * 119.99885 * 191.02816 * 5 4 2 7 7 C 1.38814 * 119.99938 * 11.02166 * 5 4 2 8 8 N 1.31614 * 119.99892 * 14.74450 * 7 5 4 9 9 Si 1.86795 * 119.99851 * 194.74616 * 7 5 4 10 10 H 1.48507 * 109.47432 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47345 * 119.99842 * 9 7 5 12 12 H 1.48497 * 109.47418 * 240.00345 * 9 7 5 13 13 C 1.46494 * 120.00203 * 0.86314 * 4 2 1 14 14 C 1.53002 * 109.47012 * 96.20359 * 13 4 2 15 15 C 1.53123 * 109.52177 * 292.60609 * 14 13 4 16 16 C 1.53043 * 109.27490 * 182.43924 * 15 14 13 17 17 N 1.46842 * 109.52427 * 59.18257 * 16 15 14 18 18 C 1.46904 * 111.00023 * 174.16044 * 17 16 15 19 19 C 1.46847 * 111.19723 * 298.25539 * 17 16 15 20 20 C 1.53038 * 109.52608 * 61.74271 * 19 17 16 21 21 H 1.09002 * 109.47403 * 54.39622 * 1 2 3 22 22 H 1.09002 * 109.46831 * 174.39667 * 1 2 3 23 23 H 1.08999 * 109.47309 * 294.39157 * 1 2 3 24 24 H 1.08993 * 109.47501 * 119.99999 * 2 1 3 25 25 H 1.09001 * 109.47131 * 70.39173 * 3 2 1 26 26 H 1.09007 * 109.46806 * 190.38829 * 3 2 1 27 27 H 1.08999 * 109.47449 * 310.38751 * 3 2 1 28 28 H 0.97006 * 119.99526 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47621 * 216.20644 * 13 4 2 30 30 H 1.09006 * 109.47100 * 336.21051 * 13 4 2 31 31 H 1.08996 * 109.52314 * 52.79772 * 14 13 4 32 32 H 1.08998 * 109.50418 * 302.37962 * 15 14 13 33 33 H 1.08997 * 109.50224 * 62.50030 * 15 14 13 34 34 H 1.09000 * 109.46018 * 299.16027 * 16 15 14 35 35 H 1.08997 * 109.45820 * 179.19604 * 16 15 14 36 36 H 1.08998 * 109.47133 * 184.20596 * 18 17 16 37 37 H 1.09000 * 109.47011 * 304.20731 * 18 17 16 38 38 H 1.09003 * 109.46986 * 64.20700 * 18 17 16 39 39 H 1.09005 * 109.46402 * 301.72811 * 19 17 16 40 40 H 1.09005 * 109.45664 * 181.75660 * 19 17 16 41 41 H 1.08994 * 109.50820 * 180.88356 * 20 19 17 42 42 H 1.09000 * 109.53451 * 60.77847 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 3.3645 -0.8313 -1.4039 6 1 3.7302 -1.1766 -2.3596 7 6 4.2591 -0.5301 -0.3861 8 7 3.8277 -0.3925 0.8498 9 14 6.0749 -0.3199 -0.7704 10 1 6.3003 -0.5247 -2.2240 11 1 6.5062 1.0493 -0.3903 12 1 6.8622 -1.3179 -0.0027 13 6 1.0665 -1.2306 -2.1701 14 6 0.8740 -0.2248 -3.3069 15 6 0.1626 1.0213 -2.7725 16 6 -0.0814 1.9973 -3.9259 17 7 -0.9027 1.3462 -4.9543 18 6 -1.2730 2.2962 -6.0118 19 6 -0.2195 0.1738 -5.5158 20 6 0.0205 -0.8566 -4.4101 21 1 -0.3634 0.5983 -0.8356 22 1 -0.3633 -1.0228 -0.1003 23 1 -0.3634 0.4244 0.9359 24 1 1.8933 -0.5138 0.8899 25 1 1.8358 1.9001 0.9681 26 1 3.1141 1.4482 -0.1853 27 1 1.5332 2.0071 -0.7827 28 1 4.4528 -0.1817 1.5609 29 1 1.4520 -2.1666 -2.5744 30 1 0.1098 -1.4130 -1.6805 31 1 1.8456 0.0555 -3.7136 32 1 -0.7915 0.7343 -2.3306 33 1 0.7852 1.4997 -2.0166 34 1 0.8739 2.2946 -4.3583 35 1 -0.6006 2.8795 -3.5513 36 1 -1.9417 1.8082 -6.7208 37 1 -1.7773 3.1549 -5.5685 38 1 -0.3746 2.6306 -6.5308 39 1 0.7366 0.4796 -5.9409 40 1 -0.8390 -0.2683 -6.2961 41 1 0.5416 -1.7199 -4.8239 42 1 -0.9356 -1.1738 -3.9937 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709403660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = 36.633093 kcal Electronic energy + Delta-G solvation = -19030.143044 eV Core-core repulsion = 16432.343410 eV Total energy + Delta-G solvation = -2597.799633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.98770 -36.71639 -33.52872 -31.60374 -30.45900 -30.12520 -27.26587 -25.91865 -24.45736 -22.91988 -22.82236 -21.09371 -19.36470 -18.74029 -16.45596 -15.60853 -14.91604 -14.86313 -14.49489 -14.03469 -13.66239 -13.52635 -13.36639 -12.76346 -12.46083 -12.16244 -11.74035 -11.66569 -11.58421 -11.35626 -11.13808 -10.88740 -10.84690 -10.66181 -10.51608 -10.21723 -9.97874 -9.70625 -9.68754 -9.43885 -9.35607 -9.13857 -8.31592 -8.16544 -6.67573 -5.48495 -3.01264 3.41803 3.49974 3.50863 4.12841 4.56770 5.13315 5.20312 5.25894 5.38964 5.48515 5.57791 5.60267 5.69988 5.78033 5.82998 5.84989 5.99671 6.12882 6.23919 6.25853 6.32913 6.39257 6.46872 6.54911 6.68854 6.70275 6.74879 6.94409 6.95854 7.04776 7.14027 7.21084 7.31149 7.32419 7.37007 7.76395 8.04993 8.14984 8.56008 9.39027 10.03658 10.46868 11.41308 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.007414 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.666477 B = 3775.949477 C = 4079.422128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.181 3.819 3 C -0.136 4.136 4 N -0.594 5.594 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.008 4.008 8 N -0.907 5.907 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.149 3.851 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.055 3.945 17 N -0.543 5.543 18 C 0.025 3.975 19 C 0.059 3.941 20 C -0.111 4.111 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.101 0.899 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.248 0.752 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 3.123 -8.884 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.076 3.924 3 C -0.194 4.194 4 N -0.316 5.316 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.204 4.204 8 N -0.555 5.555 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.221 1.221 13 C 0.022 3.978 14 C -0.128 4.128 15 C -0.156 4.156 16 C -0.073 4.073 17 N -0.268 5.268 18 C -0.123 4.123 19 C -0.069 4.069 20 C -0.149 4.149 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.118 0.882 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.203 2.980 -8.499 12.876 hybrid contribution 1.804 0.617 -0.686 2.026 sum -7.399 3.597 -9.184 12.331 Atomic orbital electron populations 1.22784 1.00023 1.00510 1.00899 1.20682 0.87509 0.92207 0.91961 1.22283 1.03196 0.97493 0.96475 1.44175 1.01813 1.64060 1.21579 1.19242 0.81986 1.38248 0.96724 0.91267 1.24685 0.97397 1.03157 0.95157 1.70016 1.32127 1.54677 0.98724 0.86269 0.86143 0.77375 0.77397 1.20725 1.21879 1.22061 1.20874 0.93685 0.93699 0.89568 1.21848 0.97591 0.96903 0.96491 1.22116 1.00689 0.95962 0.96791 1.22191 0.94654 0.97176 0.93241 1.61973 1.44156 1.07883 1.12801 1.22331 0.99426 0.96184 0.94369 1.22075 0.96199 0.91732 0.96920 1.21619 1.00419 0.96951 0.95917 0.91798 0.93746 0.94154 0.88165 0.95946 0.90941 0.96361 0.94133 0.94549 0.93177 0.91844 0.91548 0.88891 0.95375 0.91632 0.91809 0.91723 0.96136 0.95354 0.91627 0.92073 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 7.84 37.16 0.29 -3.30 16 2 C 0.18 4.26 2.49 -67.93 -0.17 4.09 16 3 C -0.14 -3.15 8.35 37.16 0.31 -2.84 16 4 N -0.59 -14.31 2.48 -165.66 -0.41 -14.72 16 5 C -0.23 -6.20 9.37 -15.06 -0.14 -6.35 16 6 H 0.07 1.85 7.87 -52.49 -0.41 1.43 16 7 C -0.01 -0.22 3.91 -17.43 -0.07 -0.29 16 8 N -0.91 -25.49 8.87 55.49 0.49 -25.00 16 9 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C 0.15 3.01 4.84 -4.04 -0.02 3.00 16 14 C -0.11 -1.91 2.41 -90.49 -0.22 -2.12 16 15 C -0.12 -2.03 3.60 -26.65 -0.10 -2.12 16 16 C 0.05 0.83 5.46 -3.83 -0.02 0.81 16 17 N -0.54 -7.66 4.91 -242.95 -1.19 -8.85 16 18 C 0.03 0.29 9.59 60.07 0.58 0.87 16 19 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 20 C -0.11 -1.65 5.38 -26.65 -0.14 -1.79 16 21 H 0.06 1.16 3.39 -51.93 -0.18 0.98 16 22 H 0.04 0.84 6.61 -51.93 -0.34 0.50 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.10 2.74 5.94 -51.93 -0.31 2.43 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.90 5.48 -51.93 -0.28 1.62 16 27 H 0.02 0.38 5.25 -51.93 -0.27 0.11 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.05 0.97 5.36 -51.93 -0.28 0.69 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.13 6.43 -51.93 -0.33 0.79 16 33 H 0.09 1.79 3.61 -51.93 -0.19 1.60 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -27.56 299.77 -8.56 -36.12 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.22 Total: 0.36 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 0.28 Total: -9.26 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.11 Total: -48.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.56 -8.56 -36.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709403660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.752 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds