Wall clock time and date at job start Mon Mar 30 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09001 * 109.46708 * 54.99953 * 3 2 1 5 5 C 1.50698 * 109.47141 * 175.00374 * 3 2 1 6 6 H 1.07998 * 120.00192 * 114.77742 * 5 3 2 7 7 C 1.37878 * 119.99781 * 294.77301 * 5 3 2 8 8 N 1.31515 * 119.99500 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00023 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47037 * 90.00279 * 9 7 5 11 11 H 1.48501 * 109.46991 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.47428 * 329.99656 * 9 7 5 13 13 N 1.46903 * 109.46815 * 295.00443 * 3 2 1 14 14 C 1.48200 * 110.99756 * 297.86802 * 13 3 2 15 15 C 1.53939 * 112.77103 * 191.68373 * 14 13 3 16 16 N 1.44255 * 112.55248 * 318.38553 * 15 14 13 17 17 C 1.48108 * 109.98825 * 93.89786 * 16 15 14 18 18 C 1.46130 * 112.18698 * 279.71633 * 17 16 15 19 19 C 1.44251 * 110.99980 * 169.62591 * 13 3 2 20 20 C 1.53004 * 109.60507 * 339.59367 * 19 13 3 21 21 C 1.52998 * 109.61251 * 100.09945 * 19 13 3 22 22 H 1.09000 * 109.46620 * 299.99718 * 1 2 3 23 23 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47266 * 59.99808 * 1 2 3 25 25 H 1.09005 * 109.47537 * 120.00141 * 2 1 3 26 26 H 1.09009 * 109.47165 * 240.00047 * 2 1 3 27 27 H 0.97012 * 119.99312 * 180.02562 * 8 7 5 28 28 H 1.09001 * 108.82707 * 312.53031 * 14 13 3 29 29 H 1.08997 * 108.82493 * 70.83625 * 14 13 3 30 30 H 1.08997 * 108.86723 * 197.58742 * 15 14 13 31 31 H 1.09005 * 108.86228 * 79.17174 * 15 14 13 32 32 H 1.00903 * 111.00057 * 217.13082 * 16 15 14 33 33 H 1.09004 * 108.93880 * 159.01833 * 17 16 15 34 34 H 1.09003 * 108.93904 * 40.41080 * 17 16 15 35 35 H 1.09001 * 108.99963 * 300.23999 * 18 17 16 36 36 H 1.09004 * 108.93179 * 181.44678 * 18 17 16 37 37 H 1.09008 * 109.46786 * 60.00494 * 20 19 13 38 38 H 1.08997 * 109.46993 * 179.97438 * 20 19 13 39 39 H 1.08995 * 109.47560 * 300.00174 * 20 19 13 40 40 H 1.09001 * 109.46734 * 98.59951 * 21 19 13 41 41 H 1.08990 * 109.47745 * 218.60655 * 21 19 13 42 42 H 1.09000 * 109.47103 * 338.60937 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1504 1.8120 -0.6892 7 6 4.1393 0.9764 1.2749 8 7 5.4500 0.9784 1.3831 9 14 3.0870 0.3397 2.6809 10 1 2.8554 -1.1166 2.5057 11 1 3.7856 0.5783 3.9694 12 1 1.7837 1.0513 2.6853 13 7 1.6513 2.0993 -1.2552 14 6 2.2667 1.4226 -2.4213 15 6 2.1270 2.2332 -3.7226 16 7 0.8225 2.8325 -3.8637 17 6 0.8415 4.2165 -3.3368 18 6 0.7298 4.2540 -1.8802 19 6 1.8997 3.5189 -1.1943 20 6 1.9973 3.9608 0.2673 21 6 3.2065 3.8433 -1.9208 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 5.8703 0.6488 2.1929 28 1 3.3257 1.2643 -2.2176 29 1 1.7883 0.4529 -2.5581 30 1 2.3048 1.5718 -4.5706 31 1 2.8797 3.0216 -3.7292 32 1 0.5192 2.8161 -4.8260 33 1 0.0092 4.7714 -3.7698 34 1 1.7753 4.6948 -3.6324 35 1 -0.2075 3.7831 -1.5840 36 1 0.7233 5.2936 -1.5527 37 1 2.8151 3.4289 0.7537 38 1 2.1854 5.0335 0.3107 39 1 1.0617 3.7346 0.7786 40 1 2.9843 4.1964 -2.9278 41 1 3.7434 4.6185 -1.3742 42 1 3.8227 2.9461 -1.9782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712519926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:05 Heat of formation + Delta-G solvation = 49.972642 kcal Electronic energy + Delta-G solvation = -19837.560082 eV Core-core repulsion = 17240.338895 eV Total energy + Delta-G solvation = -2597.221187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94584 -36.03061 -33.56025 -32.16835 -31.55795 -28.41966 -28.18630 -26.57051 -25.38545 -22.66033 -22.39340 -20.86493 -19.37172 -17.36879 -16.62486 -16.27922 -15.77098 -14.79736 -14.63846 -13.96754 -13.52060 -13.41359 -13.00426 -12.62293 -12.49333 -11.93305 -11.83619 -11.60011 -11.26039 -11.14368 -11.07487 -10.84732 -10.76521 -10.64277 -10.40739 -10.08594 -10.00911 -9.79887 -9.73235 -9.47990 -9.31611 -8.85768 -8.50308 -7.88319 -6.80059 -6.07794 -4.05508 3.29374 3.39700 3.42415 4.41492 4.52054 4.97944 5.24063 5.27829 5.46561 5.52589 5.77923 5.86221 5.89522 6.07273 6.09963 6.16608 6.18402 6.25290 6.28147 6.36080 6.44413 6.58911 6.61248 6.63211 6.73913 6.77118 6.82710 6.84716 6.93935 7.04420 7.18009 7.29747 7.36041 7.44542 7.46908 7.70703 7.78248 8.34133 8.50303 8.60573 8.97918 9.56876 11.04269 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.010122 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.495700 B = 2765.454550 C = 2991.697975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.173 3.827 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.262 1.262 13 N -0.517 5.517 14 C 0.073 3.927 15 C 0.037 3.963 16 N -0.669 5.669 17 C 0.062 3.938 18 C -0.106 4.106 19 C 0.140 3.860 20 C -0.158 4.158 21 C -0.189 4.189 22 H 0.037 0.963 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.262 0.738 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.330 0.670 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 4.516 -7.558 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C 0.065 3.935 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.538 5.538 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.186 1.186 13 N -0.240 5.240 14 C -0.055 4.055 15 C -0.093 4.093 16 N -0.299 5.299 17 C -0.066 4.066 18 C -0.145 4.145 19 C 0.049 3.951 20 C -0.215 4.215 21 C -0.247 4.247 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.564 4.152 -6.911 11.762 hybrid contribution 0.995 0.042 0.267 1.031 sum -7.569 4.194 -6.644 10.910 Atomic orbital electron populations 1.21728 0.97593 0.99016 1.01670 1.21890 0.93866 0.99695 1.00287 1.19994 0.94207 0.90301 0.88949 0.93216 1.21769 0.90943 1.41935 1.02823 0.90018 1.24966 0.94602 0.95053 0.98254 1.69922 1.08872 1.47056 1.27934 0.86969 0.81093 0.79637 0.81638 1.20524 1.22543 1.18649 1.60918 1.59619 1.00842 1.02667 1.22292 0.98374 0.96329 0.88539 1.22325 0.90421 0.98514 0.98030 1.59786 1.28332 1.18337 1.23414 1.20979 0.99307 0.89118 0.97216 1.20676 1.00637 0.98754 0.94386 1.20263 0.91512 0.88936 0.94399 1.22406 1.03472 0.99417 0.96211 1.23233 0.99132 1.02750 0.99539 0.94335 0.95210 0.91589 0.93853 0.92673 0.92828 0.92828 0.92246 0.92967 0.92832 0.85352 0.92689 0.94902 0.90956 0.92866 0.88320 0.94608 0.93463 0.92481 0.93866 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.80 37.16 0.36 -2.34 16 2 C -0.12 -2.60 4.82 -26.73 -0.13 -2.73 16 3 C 0.17 3.91 0.81 -68.86 -0.06 3.85 16 4 H 0.05 1.19 4.23 -51.93 -0.22 0.97 16 5 C -0.54 -13.93 5.83 -34.44 -0.20 -14.13 16 6 H 0.08 2.29 4.72 -52.49 -0.25 2.04 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 9 Si 0.88 21.59 24.67 -169.99 -4.19 17.39 16 10 H -0.28 -6.81 6.85 56.52 0.39 -6.42 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.26 -6.21 6.39 56.52 0.36 -5.85 16 13 N -0.52 -10.28 3.54 -211.89 -0.75 -11.03 16 14 C 0.07 1.38 4.24 -2.62 -0.01 1.37 16 15 C 0.04 0.58 5.78 -4.75 -0.03 0.55 16 16 N -0.67 -9.60 6.58 -117.85 -0.78 -10.38 16 17 C 0.06 0.86 5.82 -6.42 -0.04 0.82 16 18 C -0.11 -1.68 4.82 -29.34 -0.14 -1.82 16 19 C 0.14 2.59 0.66 -132.36 -0.09 2.50 16 20 C -0.16 -3.09 6.75 37.16 0.25 -2.84 16 21 C -0.19 -3.47 6.94 37.16 0.26 -3.21 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 25 H 0.04 1.01 3.97 -51.93 -0.21 0.80 16 26 H 0.05 1.19 6.44 -51.92 -0.33 0.86 16 27 H 0.26 7.41 8.31 -40.81 -0.34 7.07 16 28 H 0.05 1.16 5.02 -51.93 -0.26 0.90 16 29 H 0.06 1.15 6.83 -51.93 -0.35 0.79 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.84 4.09 -51.93 -0.21 0.63 16 32 H 0.33 3.90 8.89 -39.29 -0.35 3.55 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.46 5.48 -51.93 -0.28 0.17 16 35 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 36 H 0.05 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.10 2.27 5.21 -51.92 -0.27 2.00 16 38 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.05 0.90 7.35 -51.93 -0.38 0.52 16 40 H 0.06 0.92 3.12 -51.93 -0.16 0.76 16 41 H 0.04 0.80 7.72 -51.93 -0.40 0.39 16 42 H 0.08 1.61 3.82 -51.93 -0.20 1.41 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -27.96 280.61 -7.06 -35.02 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.43 Total: 6.69 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.75 Total: -47.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.19 Total: 17.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.96 -7.06 -35.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712519926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.991 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds