Wall clock time and date at job start Mon Mar 30 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47415 * 2 1 4 4 H 1.09001 * 109.46708 * 54.99953 * 3 2 1 5 5 C 1.50698 * 109.47141 * 175.00374 * 3 2 1 6 6 H 1.07998 * 120.00192 * 114.77742 * 5 3 2 7 7 C 1.37878 * 119.99781 * 294.77301 * 5 3 2 8 8 N 1.31515 * 119.99500 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00023 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47037 * 90.00279 * 9 7 5 11 11 H 1.48501 * 109.46991 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.47428 * 329.99656 * 9 7 5 13 13 N 1.46903 * 109.46815 * 295.00443 * 3 2 1 14 14 C 1.48200 * 110.99756 * 297.86802 * 13 3 2 15 15 C 1.53939 * 112.77103 * 191.68373 * 14 13 3 16 16 N 1.44255 * 112.55248 * 318.38553 * 15 14 13 17 17 C 1.48108 * 109.98825 * 93.89786 * 16 15 14 18 18 C 1.46130 * 112.18698 * 279.71633 * 17 16 15 19 19 C 1.44251 * 110.99980 * 169.62591 * 13 3 2 20 20 C 1.53004 * 109.60507 * 339.59367 * 19 13 3 21 21 C 1.52998 * 109.61251 * 100.09945 * 19 13 3 22 22 H 1.09000 * 109.46620 * 299.99718 * 1 2 3 23 23 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47266 * 59.99808 * 1 2 3 25 25 H 1.09005 * 109.47537 * 120.00141 * 2 1 3 26 26 H 1.09009 * 109.47165 * 240.00047 * 2 1 3 27 27 H 0.97012 * 119.99312 * 180.02562 * 8 7 5 28 28 H 1.09001 * 108.82707 * 312.53031 * 14 13 3 29 29 H 1.08997 * 108.82493 * 70.83625 * 14 13 3 30 30 H 1.08997 * 108.86723 * 197.58742 * 15 14 13 31 31 H 1.09005 * 108.86228 * 79.17174 * 15 14 13 32 32 H 1.00903 * 111.00057 * 217.13082 * 16 15 14 33 33 H 1.09004 * 108.93880 * 159.01833 * 17 16 15 34 34 H 1.09003 * 108.93904 * 40.41080 * 17 16 15 35 35 H 1.09001 * 108.99963 * 300.23999 * 18 17 16 36 36 H 1.09004 * 108.93179 * 181.44678 * 18 17 16 37 37 H 1.09008 * 109.46786 * 60.00494 * 20 19 13 38 38 H 1.08997 * 109.46993 * 179.97438 * 20 19 13 39 39 H 1.08995 * 109.47560 * 300.00174 * 20 19 13 40 40 H 1.09001 * 109.46734 * 98.59951 * 21 19 13 41 41 H 1.08990 * 109.47745 * 218.60655 * 21 19 13 42 42 H 1.09000 * 109.47103 * 338.60937 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1504 1.8120 -0.6892 7 6 4.1393 0.9764 1.2749 8 7 5.4500 0.9784 1.3831 9 14 3.0870 0.3397 2.6809 10 1 2.8554 -1.1166 2.5057 11 1 3.7856 0.5783 3.9694 12 1 1.7837 1.0513 2.6853 13 7 1.6513 2.0993 -1.2552 14 6 2.2667 1.4226 -2.4213 15 6 2.1270 2.2332 -3.7226 16 7 0.8225 2.8325 -3.8637 17 6 0.8415 4.2165 -3.3368 18 6 0.7298 4.2540 -1.8802 19 6 1.8997 3.5189 -1.1943 20 6 1.9973 3.9608 0.2673 21 6 3.2065 3.8433 -1.9208 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 5.8703 0.6488 2.1929 28 1 3.3257 1.2643 -2.2176 29 1 1.7883 0.4529 -2.5581 30 1 2.3048 1.5718 -4.5706 31 1 2.8797 3.0216 -3.7292 32 1 0.5192 2.8161 -4.8260 33 1 0.0092 4.7714 -3.7698 34 1 1.7753 4.6948 -3.6324 35 1 -0.2075 3.7831 -1.5840 36 1 0.7233 5.2936 -1.5527 37 1 2.8151 3.4289 0.7537 38 1 2.1854 5.0335 0.3107 39 1 1.0617 3.7346 0.7786 40 1 2.9843 4.1964 -2.9278 41 1 3.7434 4.6185 -1.3742 42 1 3.8227 2.9461 -1.9782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712519926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:05 Heat of formation + Delta-G solvation = 29.325469 kcal Electronic energy + Delta-G solvation = -19838.455411 eV Core-core repulsion = 17240.338895 eV Total energy + Delta-G solvation = -2598.116516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42463 -37.52967 -35.04842 -34.13953 -33.08755 -29.98617 -29.66360 -28.32874 -26.85974 -24.34225 -23.91296 -22.36511 -20.91201 -19.11411 -18.46097 -17.54883 -17.25221 -16.55404 -15.98207 -15.64699 -15.17948 -14.95969 -14.69459 -14.30962 -13.88982 -13.60611 -13.51723 -13.09201 -12.94635 -12.72226 -12.62024 -12.43009 -12.35143 -12.16693 -11.91863 -11.81507 -11.51078 -11.40023 -11.32842 -11.16860 -11.05871 -10.66362 -10.53599 -9.04810 -8.48620 -8.23178 -6.21423 1.30738 1.35655 1.44524 2.35402 3.12354 3.28456 3.54897 4.06858 4.11216 4.19630 4.41593 4.46930 4.47473 4.52388 4.58165 4.71307 4.76282 4.83359 4.89992 4.94601 5.01337 5.04038 5.11119 5.13401 5.18488 5.26242 5.29731 5.33982 5.38259 5.46021 5.56435 5.61257 5.65475 5.73463 5.85677 6.28112 6.35093 6.61852 6.79351 6.91272 6.99053 7.44518 8.92201 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.010122 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.495700 B = 2765.454550 C = 2991.697975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.178 3.822 4 H 0.042 0.958 5 C -0.514 4.514 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.950 5.950 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.303 1.303 12 H -0.246 1.246 13 N -0.509 5.509 14 C 0.075 3.925 15 C 0.047 3.953 16 N -0.675 5.675 17 C 0.061 3.939 18 C -0.097 4.097 19 C 0.130 3.870 20 C -0.154 4.154 21 C -0.181 4.181 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.050 0.950 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.350 0.650 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 5.332 -8.865 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.070 3.930 4 H 0.060 0.940 5 C -0.553 4.553 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.591 5.591 9 Si 0.756 3.244 10 H -0.200 1.200 11 H -0.231 1.231 12 H -0.170 1.170 13 N -0.233 5.233 14 C -0.053 4.053 15 C -0.083 4.083 16 N -0.307 5.307 17 C -0.067 4.067 18 C -0.136 4.136 19 C 0.039 3.961 20 C -0.211 4.211 21 C -0.239 4.239 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.169 0.831 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.354 4.977 -8.247 14.889 hybrid contribution 1.872 -0.161 0.593 1.970 sum -9.482 4.816 -7.654 13.103 Atomic orbital electron populations 1.21604 0.94806 1.00556 1.01866 1.21833 0.96307 0.98428 0.99331 1.19841 0.91531 0.91319 0.90313 0.94022 1.22017 0.92849 1.39202 1.01221 0.92967 1.25652 0.95372 0.96089 1.00808 1.70060 1.10653 1.49709 1.28681 0.86127 0.80206 0.79393 0.78666 1.20025 1.23124 1.16974 1.61026 1.59010 1.01525 1.01691 1.22278 0.95934 0.97059 0.90076 1.22110 0.91242 0.98527 0.96425 1.59634 1.27236 1.18750 1.25082 1.20992 1.00780 0.89080 0.95866 1.20607 0.98260 0.99135 0.95573 1.20493 0.93001 0.88445 0.94145 1.22306 1.01839 1.00220 0.96739 1.23159 0.98541 1.01016 1.01136 0.94108 0.93046 0.91319 0.95332 0.93163 0.93148 0.96407 0.92712 0.90952 0.93104 0.83111 0.89690 0.94481 0.91765 0.90981 0.92416 0.92593 0.93147 0.89733 0.94728 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.80 71.98 0.71 -3.93 16 2 C -0.12 -5.17 4.82 30.59 0.15 -5.02 16 3 C 0.18 8.06 0.81 44.17 0.04 8.09 16 4 H 0.04 1.98 4.23 -2.39 -0.01 1.97 16 5 C -0.51 -27.64 5.83 25.60 0.15 -27.49 16 6 H 0.05 3.10 4.72 -2.91 -0.01 3.08 16 7 C 0.02 1.02 5.45 84.65 0.46 1.48 16 8 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 9 Si 0.93 45.27 24.67 68.60 1.69 46.96 16 10 H -0.27 -13.05 6.85 99.48 0.68 -12.37 16 11 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.25 -11.22 6.39 99.48 0.64 -10.58 16 13 N -0.51 -19.85 3.54 -824.29 -2.91 -22.77 16 14 C 0.07 2.82 4.24 86.37 0.37 3.19 16 15 C 0.05 1.36 5.78 87.11 0.50 1.87 16 16 N -0.68 -16.87 6.58 -526.78 -3.47 -20.33 16 17 C 0.06 1.43 5.82 83.96 0.49 1.92 16 18 C -0.10 -2.75 4.82 28.91 0.14 -2.61 16 19 C 0.13 4.64 0.66 4.45 0.00 4.65 16 20 C -0.15 -5.92 6.75 71.98 0.49 -5.43 16 21 C -0.18 -6.56 6.94 71.98 0.50 -6.06 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 2.39 7.75 -2.39 -0.02 2.37 16 25 H 0.03 1.30 3.97 -2.38 -0.01 1.29 16 26 H 0.05 2.16 6.44 -2.38 -0.02 2.15 16 27 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 28 H 0.02 0.80 5.02 -2.39 -0.01 0.79 16 29 H 0.05 2.08 6.83 -2.39 -0.02 2.06 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.50 4.09 -2.38 -0.01 1.49 16 32 H 0.35 6.71 8.89 -89.69 -0.80 5.91 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 0.87 5.48 -2.39 -0.01 0.85 16 35 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 36 H 0.07 1.79 8.00 -2.38 -0.02 1.77 16 37 H 0.06 2.70 5.21 -2.38 -0.01 2.69 16 38 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 39 H 0.05 1.87 7.35 -2.39 -0.02 1.85 16 40 H 0.08 2.56 3.12 -2.39 -0.01 2.56 16 41 H 0.03 1.27 7.72 -2.39 -0.02 1.25 16 42 H 0.05 1.97 3.82 -2.39 -0.01 1.97 16 Total: -1.00 -62.22 280.61 -0.26 -62.49 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.14 Total: 21.53 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.99 Total: -29.36 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -6.08 Total: -101.62 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.69 Total: 46.96 kcal Total: -62.22 -0.26 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712519926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.814 kcal (2) G-P(sol) polarization free energy of solvation -62.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds