Wall clock time and date at job start Mon Mar 30 2020 03:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 H 1.09003 * 109.46454 * 56.51328 * 3 2 1 5 5 C 1.50699 * 109.47193 * 176.51277 * 3 2 1 6 6 H 1.07997 * 120.00031 * 120.00109 * 5 3 2 7 7 C 1.37883 * 119.99862 * 300.00534 * 5 3 2 8 8 N 1.31514 * 120.00061 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99696 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46991 * 89.99702 * 9 7 5 11 11 H 1.48495 * 109.46747 * 209.99636 * 9 7 5 12 12 H 1.48500 * 109.46867 * 329.99525 * 9 7 5 13 13 N 1.46896 * 109.47063 * 296.51626 * 3 2 1 14 14 C 1.46904 * 111.00070 * 137.36440 * 13 3 2 15 15 C 1.53001 * 109.52272 * 297.03413 * 14 13 3 16 16 C 1.53117 * 109.57397 * 57.20014 * 14 13 3 17 17 C 1.53039 * 109.28123 * 177.60369 * 16 14 13 18 18 N 1.46846 * 109.51064 * 300.80758 * 17 16 14 19 19 C 1.46902 * 111.00125 * 185.84171 * 18 17 16 20 20 C 1.46851 * 111.20317 * 61.74565 * 18 17 16 21 21 C 1.53039 * 109.52017 * 298.25872 * 20 18 17 22 22 H 1.09001 * 109.46951 * 300.16639 * 1 2 3 23 23 H 1.09000 * 109.47149 * 60.16328 * 1 2 3 24 24 H 1.09001 * 109.46800 * 180.16644 * 1 2 3 25 25 H 1.09007 * 109.47066 * 240.00166 * 2 1 3 26 26 H 1.08996 * 109.47081 * 120.00608 * 2 1 3 27 27 H 0.97003 * 119.99820 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00408 * 13.40822 * 13 3 2 29 29 H 1.09004 * 109.46517 * 301.29532 * 15 14 13 30 30 H 1.09001 * 109.47265 * 61.29079 * 15 14 13 31 31 H 1.08996 * 109.46855 * 181.29820 * 15 14 13 32 32 H 1.09001 * 109.51125 * 57.65275 * 16 14 13 33 33 H 1.09002 * 109.49709 * 297.54057 * 16 14 13 34 34 H 1.09000 * 109.46257 * 180.79492 * 17 16 14 35 35 H 1.08999 * 109.46118 * 60.81096 * 17 16 14 36 36 H 1.09005 * 109.46754 * 59.99768 * 19 18 17 37 37 H 1.08991 * 109.47445 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.46837 * 300.00409 * 19 18 17 39 39 H 1.08997 * 109.46324 * 58.26669 * 20 18 17 40 40 H 1.08998 * 109.46344 * 178.25347 * 20 18 17 41 41 H 1.08993 * 109.50189 * 179.11760 * 21 20 18 42 42 H 1.09001 * 109.50319 * 299.19656 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6265 1.9740 0.8571 5 6 3.5446 1.4434 0.0864 6 1 4.1304 1.8948 -0.7006 7 6 4.1732 0.8677 1.1702 8 7 3.4598 0.3183 2.1288 9 14 6.0381 0.8694 1.2777 10 1 6.4923 2.0962 1.9806 11 1 6.4916 -0.3283 2.0291 12 1 6.6128 0.8418 -0.0914 13 7 1.6203 2.1102 -1.2393 14 6 1.1449 3.4734 -0.9678 15 6 -0.0941 3.4139 -0.0721 16 6 2.2470 4.2706 -0.2646 17 6 1.7667 5.7060 -0.0387 18 7 1.4401 6.3229 -1.3307 19 6 1.1077 7.7444 -1.1663 20 6 0.3516 5.6024 -2.0033 21 6 0.7896 4.1638 -2.2875 22 1 -0.3633 0.5164 0.8885 23 1 -0.3633 0.5113 -0.8914 24 1 -0.3633 -1.0277 0.0030 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9020 -0.0863 2.8914 28 1 0.9162 1.5708 -1.7202 29 1 -0.8711 2.8297 -0.5652 30 1 0.1658 2.9450 0.8770 31 1 -0.4597 4.4245 0.1099 32 1 3.1425 4.2799 -0.8860 33 1 2.4746 3.8077 0.6956 34 1 2.5545 6.2800 0.4491 35 1 0.8792 5.6967 0.5939 36 1 1.9597 8.2690 -0.7338 37 1 0.8704 8.1768 -2.1382 38 1 0.2469 7.8420 -0.5047 39 1 -0.5292 5.5936 -1.3613 40 1 0.1118 6.1011 -2.9423 41 1 -0.0241 3.6248 -2.7726 42 1 1.6618 4.1714 -2.9412 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714855117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:04 Heat of formation + Delta-G solvation = -1.727587 kcal Electronic energy + Delta-G solvation = -18966.096257 eV Core-core repulsion = 16366.633179 eV Total energy + Delta-G solvation = -2599.463077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41894 -36.40122 -33.60284 -31.66193 -30.51841 -29.47764 -27.68597 -26.18758 -24.98021 -22.92781 -22.65420 -21.38731 -19.43444 -17.76437 -16.19968 -15.77754 -14.83595 -14.67776 -14.58957 -14.35100 -13.92861 -13.34122 -13.07046 -12.93742 -12.55723 -12.18902 -12.11400 -11.79768 -11.50429 -11.28501 -11.21016 -10.99103 -10.82179 -10.65569 -10.63582 -10.53959 -10.12407 -9.91263 -9.76545 -9.52817 -9.26087 -9.01763 -8.26456 -8.05315 -7.09153 -5.89668 -3.91666 3.36709 3.43405 3.48687 4.17591 4.50728 5.07690 5.13207 5.31972 5.38152 5.42339 5.49347 5.60527 5.74175 5.77558 5.87626 5.88759 5.93797 5.97404 6.12518 6.16026 6.17568 6.23567 6.39668 6.47008 6.52392 6.59945 6.67649 6.85673 6.89331 7.12615 7.15649 7.27600 7.35124 7.39247 7.59657 7.82929 8.01526 8.41805 8.56108 8.82595 9.16975 9.72589 11.15575 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.008272 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.663108 B = 3384.079611 C = 4171.249381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.216 3.784 4 H 0.019 0.981 5 C -0.481 4.481 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.122 3.878 15 C -0.182 4.182 16 C -0.094 4.094 17 C 0.054 3.946 18 N -0.541 5.541 19 C 0.026 3.974 20 C 0.059 3.941 21 C -0.103 4.103 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.257 0.743 28 H 0.318 0.682 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 8.886 -4.827 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.109 3.891 4 H 0.037 0.963 5 C -0.520 4.520 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.306 5.306 14 C 0.030 3.970 15 C -0.241 4.241 16 C -0.132 4.132 17 C -0.074 4.074 18 N -0.266 5.266 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.141 4.141 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.070 8.942 -5.118 11.958 hybrid contribution -0.667 -0.194 1.142 1.337 sum -6.737 8.748 -3.976 11.736 Atomic orbital electron populations 1.21913 0.99728 0.99377 0.99632 1.21930 0.91109 1.01221 1.03034 1.19222 0.95045 0.89152 0.85705 0.96345 1.21285 0.91192 1.34798 1.04738 0.92014 1.24953 0.97882 0.95920 0.95978 1.69871 1.34672 1.39502 1.10030 0.86609 0.86293 0.77192 0.77974 1.20971 1.21593 1.19967 1.60891 1.41682 1.01200 1.26827 1.20770 0.92217 0.91271 0.92774 1.22720 0.98929 1.00610 1.01815 1.21570 0.98227 0.91080 1.02290 1.22255 0.99210 0.96911 0.89002 1.61951 1.40168 1.01770 1.22697 1.22329 0.99528 0.89664 1.00743 1.22102 0.91793 0.95135 0.97932 1.21597 1.01273 0.93207 0.98001 0.93944 0.94669 0.94629 0.94304 0.88325 0.93281 0.86464 0.93631 0.91754 0.93548 0.90608 0.89854 0.91280 0.95283 0.91625 0.91846 0.96250 0.95165 0.91515 0.92520 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.75 37.16 0.36 -2.49 16 2 C -0.13 -3.11 5.22 -26.73 -0.14 -3.25 16 3 C 0.22 5.15 1.17 -68.87 -0.08 5.07 16 4 H 0.02 0.49 4.95 -51.93 -0.26 0.23 16 5 C -0.48 -12.94 7.71 -34.44 -0.27 -13.21 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.43 5.30 -17.82 -0.09 1.33 16 8 N -0.90 -25.34 11.30 55.43 0.63 -24.72 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.96 5.92 -94.13 -0.56 -14.52 16 14 C 0.12 2.19 0.69 -131.48 -0.09 2.10 16 15 C -0.18 -3.09 7.77 37.16 0.29 -2.80 16 16 C -0.09 -1.79 4.16 -26.65 -0.11 -1.90 16 17 C 0.05 0.86 5.22 -3.83 -0.02 0.84 16 18 N -0.54 -7.91 4.91 -242.96 -1.19 -9.10 16 19 C 0.03 0.30 9.59 60.07 0.58 0.88 16 20 C 0.06 0.81 5.22 -3.83 -0.02 0.79 16 21 C -0.10 -1.59 5.17 -26.65 -0.14 -1.73 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.61 6.55 -51.93 -0.34 0.27 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.10 2.59 5.99 -51.93 -0.31 2.28 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.32 6.17 6.48 -39.29 -0.25 5.92 16 29 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.06 1.24 6.28 -51.93 -0.33 0.91 16 31 H 0.05 0.72 4.92 -51.93 -0.26 0.47 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.84 6.37 -51.93 -0.33 1.50 16 34 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 35 H 0.03 0.46 6.54 -51.93 -0.34 0.12 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.03 0.41 6.48 -51.93 -0.34 0.08 16 40 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -27.31 308.20 -8.59 -35.91 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.36 Total: 5.63 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.27 Total: -14.37 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.12 Total: -48.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.31 -8.59 -35.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714855117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.181 kcal (2) G-P(sol) polarization free energy of solvation -27.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds