Wall clock time and date at job start Mon Mar 30 2020 04:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 N 1.46899 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99757 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46860 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.62545 * 303.34832 * 6 5 4 8 8 C 1.55138 * 110.70765 * 66.45123 * 6 5 4 9 9 C 1.54908 * 101.68619 * 154.19455 * 8 6 5 10 10 N 1.47887 * 104.77420 * 322.97931 * 9 8 6 11 11 C 1.46907 * 111.01481 * 146.33028 * 10 9 8 12 12 C 1.52999 * 109.46903 * 69.12508 * 11 10 9 13 13 C 1.50695 * 109.47221 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99981 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00219 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00134 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47031 * 89.99701 * 17 15 13 19 19 H 1.48498 * 109.47328 * 209.99494 * 17 15 13 20 20 H 1.48500 * 109.47197 * 329.99673 * 17 15 13 21 21 C 1.47444 * 108.58784 * 24.04325 * 10 9 8 22 22 H 1.08998 * 109.46938 * 60.00407 * 1 2 3 23 23 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46978 * 300.00316 * 1 2 3 25 25 H 1.08995 * 109.46978 * 239.99684 * 2 1 3 26 26 H 1.08998 * 109.46938 * 119.99592 * 2 1 3 27 27 H 1.09002 * 109.47427 * 59.99031 * 3 2 1 28 28 H 1.09003 * 109.47201 * 299.99859 * 3 2 1 29 29 H 1.00900 * 110.99983 * 56.04799 * 4 3 2 30 30 H 1.09002 * 109.47058 * 60.00080 * 5 4 3 31 31 H 1.08999 * 109.47189 * 299.99849 * 5 4 3 32 32 H 1.09002 * 110.99302 * 272.30456 * 8 6 5 33 33 H 1.08995 * 110.99003 * 36.08343 * 8 6 5 34 34 H 1.08993 * 110.37866 * 81.77867 * 9 8 6 35 35 H 1.09005 * 110.37455 * 204.12444 * 9 8 6 36 36 H 1.09005 * 109.46832 * 189.12286 * 11 10 9 37 37 H 1.08994 * 109.46980 * 309.12661 * 11 10 9 38 38 H 1.09001 * 109.47404 * 300.00262 * 12 11 10 39 39 H 1.09000 * 109.47110 * 59.99847 * 12 11 10 40 40 H 0.97006 * 120.00548 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.89066 * 239.63908 * 21 10 9 42 42 H 1.08993 * 110.02675 * 118.51798 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5650 2.7731 0.0000 7 1 5.9338 2.2026 0.8525 8 6 6.0979 2.1783 -1.3300 9 6 7.5040 2.8220 -1.4205 10 7 7.3272 4.1904 -0.8882 11 6 8.5317 4.6384 -0.1764 12 6 9.6664 4.8543 -1.1799 13 6 10.9018 5.3145 -0.4499 14 1 10.8800 5.4401 0.6226 15 6 12.0599 5.5754 -1.1511 16 7 12.0866 5.4221 -2.4569 17 14 13.5915 6.1452 -0.2460 18 1 14.3962 4.9641 0.1573 19 1 14.4000 7.0134 -1.1391 20 1 13.1958 6.9109 0.9632 21 6 6.1527 4.2000 0.0030 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.8710 0.9162 -0.7805 30 1 3.6856 3.3378 0.8896 31 1 3.6864 3.3367 -0.8904 32 1 6.1687 1.0922 -1.2714 33 1 5.4745 2.4820 -2.1710 34 1 8.2156 2.2666 -0.8097 35 1 7.8390 2.8577 -2.4571 36 1 8.3210 5.5746 0.3407 37 1 8.8277 3.8810 0.5493 38 1 9.8770 3.9183 -1.6971 39 1 9.3703 5.6118 -1.9056 40 1 12.9015 5.6052 -2.9503 41 1 5.4111 4.9071 -0.3685 42 1 6.4534 4.4750 1.0139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719052217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:45 Heat of formation + Delta-G solvation = -22.486094 kcal Electronic energy + Delta-G solvation = -17041.163150 eV Core-core repulsion = 14440.799916 eV Total energy + Delta-G solvation = -2600.363234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99552 -36.83649 -34.14526 -32.98144 -31.43583 -29.14080 -28.68006 -25.96907 -24.23411 -23.19516 -21.72829 -21.35690 -19.95808 -19.74495 -16.54530 -16.34202 -15.58267 -15.26718 -14.75652 -14.51695 -14.24258 -13.87252 -13.71892 -13.13275 -12.91842 -12.58223 -12.46348 -12.06124 -12.03535 -11.88881 -11.43496 -11.22794 -11.03891 -10.99507 -10.85053 -10.75667 -10.56619 -10.47092 -10.42640 -9.80251 -9.31039 -9.08966 -8.62088 -8.31220 -7.66164 -5.96569 -3.98980 3.33792 3.39826 3.43332 3.92340 4.43997 4.61424 4.64647 4.75399 4.78872 4.87614 5.02566 5.18584 5.27248 5.37169 5.39195 5.43186 5.48147 5.56432 5.61809 5.70217 5.71305 5.85037 5.87870 5.94908 6.00379 6.11864 6.22270 6.25061 6.46424 6.47172 6.54670 6.84523 7.01959 7.19113 7.55094 7.58217 7.81711 7.93703 8.12517 8.47201 9.08540 9.64469 11.14838 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.081747 B = 0.003221 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.439921 B = 8690.317006 C = 8810.117075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.692 5.692 5 C 0.072 3.928 6 C -0.108 4.108 7 H 0.081 0.919 8 C -0.126 4.126 9 C 0.049 3.951 10 N -0.531 5.531 11 C 0.058 3.942 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.048 3.952 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.341 0.659 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.015 0.985 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.073 -9.175 3.872 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.323 5.323 5 C -0.057 4.057 6 C -0.128 4.128 7 H 0.099 0.901 8 C -0.165 4.165 9 C -0.079 4.079 10 N -0.255 5.255 11 C -0.069 4.069 12 C -0.008 4.008 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.081 4.081 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.159 0.841 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.978 -8.854 4.001 22.215 hybrid contribution 0.916 0.082 0.200 0.941 sum -19.062 -8.772 4.200 21.400 Atomic orbital electron populations 1.21731 0.95623 1.01744 1.01802 1.21510 0.95535 0.96490 1.02605 1.22001 0.87877 0.96893 1.00450 1.60492 1.07039 1.14588 1.50213 1.21912 0.94217 0.89115 1.00494 1.22422 0.94196 0.97434 0.98699 0.90094 1.22795 0.97218 0.99616 0.96835 1.22970 0.95297 0.88495 1.01117 1.63673 1.04272 1.23023 1.34497 1.22539 0.89820 0.97951 0.96557 1.19051 0.90443 0.97361 0.93994 1.21209 0.95938 1.45156 0.93735 0.92842 1.24999 0.98857 0.95689 0.94830 1.69976 1.27811 1.49295 1.06187 0.86597 0.83137 0.78648 0.79620 1.20719 1.21207 1.19906 1.22808 0.93903 0.95304 0.96104 0.92850 0.92562 0.92649 0.92174 0.91120 0.91154 0.95434 0.84118 0.91112 0.94906 0.91218 0.91358 0.93586 0.90350 0.92270 0.96126 0.96621 0.95809 0.93033 0.91305 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.91 6.19 -26.73 -0.17 -1.08 16 3 C 0.06 0.49 5.68 -3.83 -0.02 0.47 16 4 N -0.69 -6.91 6.50 -113.78 -0.74 -7.65 16 5 C 0.07 0.78 5.05 -3.82 -0.02 0.76 16 6 C -0.11 -1.37 3.19 -88.80 -0.28 -1.65 16 7 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 8 C -0.13 -1.65 5.71 -24.59 -0.14 -1.79 16 9 C 0.05 0.84 5.79 -2.27 -0.01 0.83 16 10 N -0.53 -10.02 5.16 -231.21 -1.19 -11.22 16 11 C 0.06 1.28 4.51 -3.82 -0.02 1.26 16 12 C 0.03 0.78 5.02 -27.89 -0.14 0.64 16 13 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.05 0.72 6.46 -2.83 -0.02 0.70 16 22 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.34 3.23 7.91 -39.29 -0.31 2.92 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 34 H 0.05 0.83 7.62 -51.93 -0.40 0.43 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 37 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 38 H 0.02 0.44 7.49 -51.93 -0.39 0.05 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 42 H 0.05 0.77 7.56 -51.93 -0.39 0.38 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -30.34 332.03 -10.24 -40.59 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.17 Total: -2.81 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.86 Total: -14.27 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -1.20 Total: -45.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.34 -10.24 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719052217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.101 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds