Wall clock time and date at job start Mon Mar 30 2020 04:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 N 1.46899 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99757 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46860 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.62545 * 303.34832 * 6 5 4 8 8 C 1.55138 * 110.70765 * 66.45123 * 6 5 4 9 9 C 1.54908 * 101.68619 * 154.19455 * 8 6 5 10 10 N 1.47887 * 104.77420 * 322.97931 * 9 8 6 11 11 C 1.46907 * 111.01481 * 146.33028 * 10 9 8 12 12 C 1.52999 * 109.46903 * 69.12508 * 11 10 9 13 13 C 1.50695 * 109.47221 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99981 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00219 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00134 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47031 * 89.99701 * 17 15 13 19 19 H 1.48498 * 109.47328 * 209.99494 * 17 15 13 20 20 H 1.48500 * 109.47197 * 329.99673 * 17 15 13 21 21 C 1.47444 * 108.58784 * 24.04325 * 10 9 8 22 22 H 1.08998 * 109.46938 * 60.00407 * 1 2 3 23 23 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46978 * 300.00316 * 1 2 3 25 25 H 1.08995 * 109.46978 * 239.99684 * 2 1 3 26 26 H 1.08998 * 109.46938 * 119.99592 * 2 1 3 27 27 H 1.09002 * 109.47427 * 59.99031 * 3 2 1 28 28 H 1.09003 * 109.47201 * 299.99859 * 3 2 1 29 29 H 1.00900 * 110.99983 * 56.04799 * 4 3 2 30 30 H 1.09002 * 109.47058 * 60.00080 * 5 4 3 31 31 H 1.08999 * 109.47189 * 299.99849 * 5 4 3 32 32 H 1.09002 * 110.99302 * 272.30456 * 8 6 5 33 33 H 1.08995 * 110.99003 * 36.08343 * 8 6 5 34 34 H 1.08993 * 110.37866 * 81.77867 * 9 8 6 35 35 H 1.09005 * 110.37455 * 204.12444 * 9 8 6 36 36 H 1.09005 * 109.46832 * 189.12286 * 11 10 9 37 37 H 1.08994 * 109.46980 * 309.12661 * 11 10 9 38 38 H 1.09001 * 109.47404 * 300.00262 * 12 11 10 39 39 H 1.09000 * 109.47110 * 59.99847 * 12 11 10 40 40 H 0.97006 * 120.00548 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.89066 * 239.63908 * 21 10 9 42 42 H 1.08993 * 110.02675 * 118.51798 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5650 2.7731 0.0000 7 1 5.9338 2.2026 0.8525 8 6 6.0979 2.1783 -1.3300 9 6 7.5040 2.8220 -1.4205 10 7 7.3272 4.1904 -0.8882 11 6 8.5317 4.6384 -0.1764 12 6 9.6664 4.8543 -1.1799 13 6 10.9018 5.3145 -0.4499 14 1 10.8800 5.4401 0.6226 15 6 12.0599 5.5754 -1.1511 16 7 12.0866 5.4221 -2.4569 17 14 13.5915 6.1452 -0.2460 18 1 14.3962 4.9641 0.1573 19 1 14.4000 7.0134 -1.1391 20 1 13.1958 6.9109 0.9632 21 6 6.1527 4.2000 0.0030 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.8710 0.9162 -0.7805 30 1 3.6856 3.3378 0.8896 31 1 3.6864 3.3367 -0.8904 32 1 6.1687 1.0922 -1.2714 33 1 5.4745 2.4820 -2.1710 34 1 8.2156 2.2666 -0.8097 35 1 7.8390 2.8577 -2.4571 36 1 8.3210 5.5746 0.3407 37 1 8.8277 3.8810 0.5493 38 1 9.8770 3.9183 -1.6971 39 1 9.3703 5.6118 -1.9056 40 1 12.9015 5.6052 -2.9503 41 1 5.4111 4.9071 -0.3685 42 1 6.4534 4.4750 1.0139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719052217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:45 Heat of formation + Delta-G solvation = -42.771698 kcal Electronic energy + Delta-G solvation = -17042.042799 eV Core-core repulsion = 14440.799916 eV Total energy + Delta-G solvation = -2601.242884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25385 -37.71646 -35.71258 -34.45215 -32.82770 -30.40641 -30.28333 -27.09474 -25.88954 -24.13748 -23.20314 -22.24934 -21.38900 -20.98784 -18.56212 -17.39095 -16.73909 -16.53720 -16.18720 -15.72958 -15.62589 -15.07742 -14.71959 -14.30598 -14.24939 -13.89074 -13.80921 -13.39342 -13.12814 -12.96056 -12.79793 -12.74696 -12.50426 -12.33982 -12.11409 -11.80282 -11.74404 -11.65803 -11.58448 -11.51331 -11.30407 -11.17040 -10.56625 -9.37864 -9.17530 -8.20973 -6.32968 1.39299 1.41312 1.52517 2.39644 3.10692 3.12023 3.20467 3.68518 3.74535 4.03916 4.09228 4.20435 4.36693 4.38265 4.45033 4.50073 4.54011 4.57985 4.66388 4.71524 4.80507 4.82937 4.87516 4.94522 4.99612 5.02595 5.11693 5.14050 5.21247 5.32140 5.37365 5.43116 5.44185 5.63694 5.77840 6.07429 6.08274 6.24657 6.32862 6.46053 6.84173 7.36247 8.91299 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.081747 B = 0.003221 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.439921 B = 8690.317006 C = 8810.117075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.698 5.698 5 C 0.081 3.919 6 C -0.095 4.095 7 H 0.077 0.923 8 C -0.111 4.111 9 C 0.044 3.956 10 N -0.548 5.548 11 C 0.076 3.924 12 C 0.038 3.962 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.046 3.954 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.344 0.656 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.021 0.979 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.996 -9.575 5.030 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.330 5.330 5 C -0.049 4.049 6 C -0.115 4.115 7 H 0.096 0.904 8 C -0.149 4.149 9 C -0.084 4.084 10 N -0.272 5.272 11 C -0.052 4.052 12 C 0.000 4.000 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.083 4.083 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.163 0.837 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.928 -9.263 5.167 23.462 hybrid contribution 1.170 0.196 -0.207 1.204 sum -19.758 -9.068 4.959 22.298 Atomic orbital electron populations 1.21718 0.94737 1.02255 1.02016 1.21477 0.96273 0.95669 1.02378 1.22030 0.86925 0.97644 1.00513 1.60484 1.07990 1.13976 1.50515 1.21776 0.92463 0.89796 1.00838 1.22293 0.95581 0.95433 0.98213 0.90439 1.22722 0.94286 1.00524 0.97400 1.22981 0.97810 0.88026 0.99604 1.63559 1.04081 1.24275 1.35284 1.22164 0.89716 0.98216 0.95086 1.18874 0.92101 0.94822 0.94155 1.21630 0.97026 1.45514 0.94274 0.92194 1.26004 1.02618 0.95513 0.95693 1.70116 1.29021 1.50057 1.07995 0.85396 0.78407 0.78441 0.78477 1.19671 1.20607 1.18681 1.22878 0.92558 0.97375 0.95441 0.92603 0.91940 0.92478 0.91982 0.91751 0.91224 0.95181 0.83749 0.90652 0.94726 0.89170 0.90465 0.94877 0.92197 0.92075 0.96118 0.99105 0.99155 0.92716 0.90213 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.55 6.19 30.60 0.19 -1.36 16 3 C 0.06 0.86 5.68 86.30 0.49 1.36 16 4 N -0.70 -12.31 6.50 -513.87 -3.34 -15.65 16 5 C 0.08 1.55 5.05 86.30 0.44 1.99 16 6 C -0.10 -2.25 3.19 -9.61 -0.03 -2.28 16 7 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 8 C -0.11 -2.72 5.71 31.98 0.18 -2.54 16 9 C 0.04 1.51 5.79 86.77 0.50 2.01 16 10 N -0.55 -20.82 5.16 -885.42 -4.57 -25.39 16 11 C 0.08 3.39 4.51 86.30 0.39 3.78 16 12 C 0.04 2.12 5.02 29.85 0.15 2.27 16 13 C -0.55 -32.14 9.11 25.60 0.23 -31.90 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 17 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.05 1.33 6.46 86.65 0.56 1.89 16 22 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.34 5.67 7.91 -89.69 -0.71 4.96 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 0.67 8.10 -2.39 -0.02 0.65 16 32 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.08 1.78 8.02 -2.39 -0.02 1.76 16 34 H 0.03 1.22 7.62 -2.39 -0.02 1.20 16 35 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.06 2.67 8.03 -2.38 -0.02 2.65 16 37 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 38 H -0.01 -0.56 7.49 -2.39 -0.02 -0.58 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 41 H 0.08 2.16 7.83 -2.39 -0.02 2.14 16 42 H 0.05 1.52 7.56 -2.39 -0.02 1.51 16 Total: -1.00 -65.69 332.03 -1.09 -66.78 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.24 Total: 10.28 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.28 Total: -25.22 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -7.63 Total: -98.93 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.69 -1.09 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719052217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.005 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds