Wall clock time and date at job start Mon Mar 30 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46898 * 109.47548 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00015 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47230 * 180.02562 * 5 4 3 7 7 H 1.08997 * 110.27594 * 52.90339 * 6 5 4 8 8 C 1.54597 * 110.30562 * 290.71792 * 6 5 4 9 9 C 1.54942 * 102.92181 * 219.12307 * 8 6 5 10 10 N 1.48536 * 103.22344 * 37.41461 * 9 8 6 11 11 C 1.46897 * 110.99848 * 200.28195 * 10 9 8 12 12 C 1.53006 * 109.46895 * 307.39267 * 11 10 9 13 13 C 1.50704 * 109.46809 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99689 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99868 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99923 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46859 * 90.00003 * 17 15 13 19 19 H 1.48501 * 109.46838 * 209.99653 * 17 15 13 20 20 H 1.48496 * 109.46969 * 330.00015 * 17 15 13 21 21 C 1.47905 * 105.82023 * 320.79096 * 10 9 8 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.00900 * 111.00081 * 303.95550 * 4 3 2 30 30 H 1.09006 * 109.47246 * 299.99907 * 5 4 3 31 31 H 1.09000 * 109.47287 * 60.00158 * 5 4 3 32 32 H 1.08999 * 110.72512 * 337.48352 * 8 6 5 33 33 H 1.08999 * 110.72857 * 100.76559 * 8 6 5 34 34 H 1.08997 * 110.66964 * 278.98191 * 9 8 6 35 35 H 1.08997 * 110.66691 * 155.84783 * 9 8 6 36 36 H 1.08994 * 109.47545 * 67.39240 * 11 10 9 37 37 H 1.09002 * 109.46999 * 187.39774 * 11 10 9 38 38 H 1.08992 * 109.47064 * 299.99759 * 12 11 10 39 39 H 1.09002 * 109.46883 * 60.00437 * 12 11 10 40 40 H 0.96999 * 119.99712 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.91773 * 265.98002 * 21 10 9 42 42 H 1.08998 * 109.91303 * 144.68535 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0013 6 6 5.5649 2.7732 0.0012 7 1 5.9260 2.1471 -0.8146 8 6 6.0875 2.2456 1.3571 9 6 7.3306 3.1328 1.6183 10 7 6.9117 4.4633 1.1079 11 6 8.0785 5.3094 0.8238 12 6 8.9849 5.3583 2.0555 13 6 10.1816 6.2267 1.7642 14 1 10.2851 6.6971 0.7976 15 6 11.1445 6.4208 2.7319 16 7 11.0182 5.8484 3.9092 17 14 12.6282 7.4967 2.3707 18 1 12.3238 8.9013 2.7445 19 1 13.7917 7.0159 3.1583 20 1 12.9484 7.4282 0.9223 21 6 6.1375 4.1972 -0.1240 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.8703 0.9165 0.7822 30 1 3.6862 3.3376 -0.8888 31 1 3.6855 3.3370 0.8912 32 1 5.3416 2.3867 2.1394 33 1 6.3721 1.1963 1.2790 34 1 8.1918 2.7615 1.0630 35 1 7.5511 3.1819 2.6846 36 1 8.6320 4.8942 -0.0184 37 1 7.7450 6.3176 0.5779 38 1 8.4315 5.7735 2.8976 39 1 9.3184 4.3501 2.3013 40 1 11.6954 5.9852 4.5901 41 1 6.7912 4.2593 -0.9940 42 1 5.3247 4.9177 -0.2146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719052218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:48 Heat of formation + Delta-G solvation = -21.986365 kcal Electronic energy + Delta-G solvation = -17086.708997 eV Core-core repulsion = 14486.367433 eV Total energy + Delta-G solvation = -2600.341564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98224 -36.80392 -34.18818 -32.95601 -31.46733 -29.05407 -28.69783 -25.93888 -24.21949 -23.10653 -21.82736 -21.50809 -19.76651 -19.59599 -16.47967 -16.37973 -15.54859 -15.25481 -14.83037 -14.48557 -14.29046 -13.86408 -13.73156 -13.13894 -12.87859 -12.54082 -12.37582 -12.07634 -11.98400 -11.78725 -11.44394 -11.21253 -11.01131 -10.97270 -10.82282 -10.75049 -10.53932 -10.43889 -10.35766 -9.88461 -9.31247 -9.10933 -8.57876 -8.34187 -7.76638 -5.99188 -4.01493 3.32658 3.38588 3.41961 3.96776 4.43697 4.65837 4.67465 4.79323 4.85609 4.90108 5.05124 5.18711 5.30743 5.36797 5.42304 5.47837 5.54118 5.62472 5.66441 5.73429 5.75993 5.88895 5.90890 5.98749 6.06117 6.15577 6.21246 6.28367 6.45892 6.47959 6.56193 6.88963 6.95689 7.23363 7.50957 7.53008 7.75685 7.88545 8.07378 8.44258 9.05498 9.62101 11.12269 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.080842 B = 0.003280 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.273247 B = 8534.830281 C = 8709.583303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.693 5.693 5 C 0.070 3.930 6 C -0.096 4.096 7 H 0.079 0.921 8 C -0.121 4.121 9 C 0.042 3.958 10 N -0.519 5.519 11 C 0.053 3.947 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.040 3.960 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.341 0.659 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.041 0.959 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 -10.412 -7.309 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.324 5.324 5 C -0.059 4.059 6 C -0.116 4.116 7 H 0.098 0.902 8 C -0.159 4.159 9 C -0.086 4.086 10 N -0.243 5.243 11 C -0.074 4.074 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.089 4.089 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.158 0.842 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.348 -10.196 -7.448 21.457 hybrid contribution 1.232 0.547 0.177 1.360 sum -16.116 -9.650 -7.271 20.142 Atomic orbital electron populations 1.21733 0.95648 1.01713 1.01815 1.21508 0.95518 0.96521 1.02567 1.21997 0.87929 0.96843 1.00469 1.60513 1.07052 1.14701 1.50120 1.22025 0.94271 0.88991 1.00580 1.22028 0.94288 0.96768 0.98473 0.90229 1.22606 0.98142 0.98835 0.96347 1.23133 0.95355 0.88614 1.01517 1.64866 1.22178 1.12409 1.24895 1.22501 0.89431 0.95701 0.99751 1.19152 0.92855 0.97280 0.92035 1.21199 1.05888 1.29724 0.99216 0.92777 1.25002 0.98279 0.96008 0.95085 1.69971 1.35106 1.43881 1.04359 0.86585 0.82370 0.80729 0.78256 1.20624 1.21222 1.19929 1.22876 0.97901 0.95344 0.92814 0.92829 0.92587 0.92665 0.92172 0.91163 0.91182 0.95402 0.84154 0.91236 0.94652 0.91446 0.91429 0.93872 0.89770 0.96060 0.92006 0.95819 0.96372 0.93005 0.94080 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.94 6.19 -26.73 -0.17 -1.10 16 3 C 0.06 0.51 5.68 -3.83 -0.02 0.48 16 4 N -0.69 -7.10 6.50 -113.78 -0.74 -7.84 16 5 C 0.07 0.79 4.83 -3.82 -0.02 0.78 16 6 C -0.10 -1.23 3.23 -89.26 -0.29 -1.52 16 7 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.12 -1.63 5.89 -24.87 -0.15 -1.77 16 9 C 0.04 0.73 5.10 -1.89 -0.01 0.72 16 10 N -0.52 -9.80 5.40 -230.45 -1.24 -11.05 16 11 C 0.05 1.17 4.97 -3.82 -0.02 1.15 16 12 C 0.02 0.64 4.63 -27.88 -0.13 0.51 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.04 0.61 6.36 -2.76 -0.02 0.59 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.34 3.33 8.04 -39.29 -0.32 3.02 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 32 H 0.07 0.89 7.76 -51.93 -0.40 0.48 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 35 H 0.08 1.60 7.66 -51.93 -0.40 1.20 16 36 H 0.02 0.46 7.81 -51.93 -0.41 0.06 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.02 0.50 6.79 -51.93 -0.35 0.15 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.04 0.63 7.57 -51.93 -0.39 0.24 16 42 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -30.01 330.48 -10.26 -40.26 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.11 Total: -2.27 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.86 Total: -14.54 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -1.25 Total: -45.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.01 -10.26 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719052218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.277 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds