Wall clock time and date at job start Mon Mar 30 2020 04:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 N 1.46895 * 109.47694 * 120.00093 * 2 1 3 5 5 C 1.46904 * 110.99956 * 84.99665 * 4 2 1 6 6 C 1.53002 * 109.47046 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.62873 * 305.70295 * 6 5 4 8 8 C 1.55142 * 110.70341 * 68.80902 * 6 5 4 9 9 C 1.55380 * 101.43737 * 154.11367 * 8 6 5 10 10 N 1.47844 * 104.83918 * 322.95685 * 9 8 6 11 11 C 1.46900 * 110.99982 * 146.36889 * 10 9 8 12 12 C 1.52996 * 109.47365 * 49.15253 * 11 10 9 13 13 C 1.50696 * 109.47426 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99770 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46562 * 90.00285 * 17 15 13 19 19 H 1.48495 * 109.47272 * 210.00503 * 17 15 13 20 20 H 1.48505 * 109.46963 * 330.00668 * 17 15 13 21 21 C 1.47443 * 108.56494 * 24.09964 * 10 9 8 22 22 H 1.08998 * 109.47361 * 60.00040 * 1 2 3 23 23 H 1.09006 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47047 * 299.99516 * 1 2 3 25 25 H 1.09008 * 109.47148 * 240.00322 * 2 1 3 26 26 H 1.08997 * 109.47068 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46991 * 300.00187 * 3 2 1 28 28 H 1.08996 * 109.47177 * 59.99996 * 3 2 1 29 29 H 1.00891 * 111.00814 * 208.95668 * 4 2 1 30 30 H 1.09002 * 109.47072 * 60.00857 * 5 4 2 31 31 H 1.09002 * 109.47565 * 300.00399 * 5 4 2 32 32 H 1.09003 * 110.98867 * 272.29941 * 8 6 5 33 33 H 1.08996 * 110.99420 * 36.12001 * 8 6 5 34 34 H 1.08999 * 110.35214 * 204.10929 * 9 8 6 35 35 H 1.09008 * 110.35653 * 81.80030 * 9 8 6 36 36 H 1.08999 * 109.47331 * 169.15585 * 11 10 9 37 37 H 1.09000 * 109.47057 * 289.15853 * 11 10 9 38 38 H 1.08998 * 109.47676 * 300.00293 * 12 11 10 39 39 H 1.09004 * 109.47227 * 60.00037 * 12 11 10 40 40 H 0.97009 * 119.99045 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.88254 * 239.60085 * 21 10 9 42 42 H 1.09001 * 110.02167 * 118.49616 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 -2.1438 0.9806 6 6 2.5953 -2.8290 2.2488 7 1 3.5456 -2.3965 2.5616 8 6 1.5464 -2.7305 3.3877 9 6 1.9079 -3.9730 4.2479 10 7 2.2900 -5.0130 3.2690 11 6 3.3447 -5.8816 3.8084 12 6 2.9502 -6.3531 5.2094 13 6 4.0324 -7.2437 5.7631 14 1 4.9138 -7.4523 5.1746 15 6 3.8976 -7.7923 7.0208 16 7 4.8424 -8.5691 7.5041 17 14 2.3736 -7.4310 8.0389 18 1 1.3341 -8.4523 7.7533 19 1 2.7218 -7.4691 9.4820 20 1 1.8535 -6.0843 7.6906 21 6 2.7341 -4.3501 2.0291 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 2.9173 -0.3307 1.4847 30 1 2.7590 -2.3575 0.1530 31 1 1.0871 -2.5188 0.7424 32 1 1.6720 -1.8085 3.9555 33 1 0.5333 -2.8095 2.9936 34 1 1.0438 -4.2969 4.8279 35 1 2.7457 -3.7467 4.9076 36 1 3.4722 -6.7460 3.1567 37 1 4.2808 -5.3259 3.8623 38 1 2.8227 -5.4888 5.8612 39 1 2.0140 -6.9088 5.1557 40 1 4.7475 -8.9547 8.3892 41 1 2.1054 -4.6633 1.1956 42 1 3.7745 -4.6017 1.8234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719054707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:51 Heat of formation + Delta-G solvation = -13.731567 kcal Electronic energy + Delta-G solvation = -17408.415071 eV Core-core repulsion = 14808.431462 eV Total energy + Delta-G solvation = -2599.983609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07687 -37.28337 -34.06043 -32.55509 -30.93218 -29.09045 -28.48978 -27.51056 -24.75078 -23.41388 -21.57008 -20.83671 -19.98556 -19.50071 -16.82573 -16.21106 -15.81468 -15.10475 -14.84172 -14.49871 -14.18786 -13.94629 -13.53375 -12.85043 -12.83435 -12.75124 -12.41602 -12.35766 -12.16965 -11.94834 -11.56965 -11.30987 -11.17606 -11.09872 -10.83277 -10.82044 -10.55972 -10.43456 -10.10269 -9.75306 -9.66538 -9.16635 -8.61174 -8.51609 -7.74457 -6.02648 -4.00596 3.34331 3.40949 3.45748 3.87424 4.47994 4.52037 4.63118 4.70686 4.80201 4.91721 5.04061 5.12214 5.31980 5.36919 5.39237 5.50628 5.51950 5.57522 5.60834 5.66542 5.74270 5.80682 5.85942 6.01454 6.06323 6.11596 6.18332 6.23287 6.35049 6.45058 6.50317 6.78503 6.86020 7.18691 7.19715 7.38437 7.55743 7.66574 7.89128 8.55249 9.01470 9.59985 11.10779 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053452 B = 0.003917 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.708125 B = 7146.043963 C = 7350.136808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 C -0.154 4.154 4 N -0.685 5.685 5 C 0.072 3.928 6 C -0.108 4.108 7 H 0.071 0.929 8 C -0.109 4.109 9 C 0.041 3.959 10 N -0.533 5.533 11 C 0.065 3.935 12 C -0.013 4.013 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.048 3.952 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 18.151 -14.548 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.212 4.212 4 N -0.317 5.317 5 C -0.057 4.057 6 C -0.128 4.128 7 H 0.089 0.911 8 C -0.147 4.147 9 C -0.087 4.087 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.050 4.050 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.080 4.080 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.090 17.690 -14.205 24.086 hybrid contribution 0.875 0.406 0.224 0.991 sum -7.214 18.096 -13.981 23.978 Atomic orbital electron populations 1.21789 0.94544 1.01919 1.01510 1.21501 0.96183 0.94137 0.91413 1.21971 1.00704 0.95963 1.02532 1.60507 1.33307 1.03765 1.34075 1.21984 1.00643 0.87285 0.95774 1.22393 0.99123 0.95729 0.95544 0.91061 1.22706 0.98588 0.97562 0.95828 1.23140 1.00438 0.90290 0.94822 1.63704 1.39425 1.18783 1.03823 1.22304 0.90583 0.95166 0.98108 1.19658 0.97445 0.96492 0.91435 1.21089 1.05039 1.28395 1.01383 0.91151 1.25007 0.96279 0.94555 0.97593 1.69923 1.33589 1.32919 1.17934 0.86744 0.83653 0.79536 0.79173 1.20211 1.21474 1.18965 1.22800 0.99301 0.91432 0.94516 0.92865 0.92752 0.91985 0.94159 0.92859 0.92064 0.91693 0.84244 0.95440 0.90694 0.91087 0.91104 0.90691 0.93266 0.91496 0.95592 0.96438 0.96233 0.92751 0.91181 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.42 37.16 0.35 -0.78 16 2 C 0.08 0.63 3.22 -67.72 -0.22 0.41 16 3 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 4 N -0.68 -6.42 6.17 -106.72 -0.66 -7.08 16 5 C 0.07 0.74 4.77 -3.82 -0.02 0.73 16 6 C -0.11 -1.32 3.10 -88.80 -0.28 -1.60 16 7 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.11 -1.44 6.43 -24.33 -0.16 -1.60 16 9 C 0.04 0.68 5.32 -2.04 -0.01 0.67 16 10 N -0.53 -9.60 5.31 -230.94 -1.23 -10.83 16 11 C 0.07 1.38 4.76 -3.83 -0.02 1.36 16 12 C -0.01 -0.31 3.71 -27.89 -0.10 -0.42 16 13 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 14 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 17 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 C 0.05 0.70 6.46 -2.84 -0.02 0.68 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.34 7.80 -51.92 -0.40 -0.07 16 26 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.34 2.97 8.35 -39.30 -0.33 2.64 16 30 H 0.03 0.27 8.06 -51.93 -0.42 -0.15 16 31 H 0.07 0.81 7.35 -51.93 -0.38 0.43 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.89 7.02 -51.92 -0.36 0.52 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 38 H 0.02 0.43 5.53 -51.93 -0.29 0.14 16 39 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 42 H 0.05 0.74 7.50 -51.93 -0.39 0.35 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -30.63 325.14 -9.42 -40.05 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.98 Total: -2.16 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -0.56 Total: -14.87 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -1.11 Total: -45.48 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.63 -9.42 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.315 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds