Wall clock time and date at job start Mon Mar 30 2020 04:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 N 1.46895 * 109.47694 * 120.00093 * 2 1 3 5 5 C 1.46904 * 110.99956 * 84.99665 * 4 2 1 6 6 C 1.53002 * 109.47046 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.62873 * 305.70295 * 6 5 4 8 8 C 1.55142 * 110.70341 * 68.80902 * 6 5 4 9 9 C 1.55380 * 101.43737 * 154.11367 * 8 6 5 10 10 N 1.47844 * 104.83918 * 322.95685 * 9 8 6 11 11 C 1.46900 * 110.99982 * 146.36889 * 10 9 8 12 12 C 1.52996 * 109.47365 * 49.15253 * 11 10 9 13 13 C 1.50696 * 109.47426 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99770 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46562 * 90.00285 * 17 15 13 19 19 H 1.48495 * 109.47272 * 210.00503 * 17 15 13 20 20 H 1.48505 * 109.46963 * 330.00668 * 17 15 13 21 21 C 1.47443 * 108.56494 * 24.09964 * 10 9 8 22 22 H 1.08998 * 109.47361 * 60.00040 * 1 2 3 23 23 H 1.09006 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47047 * 299.99516 * 1 2 3 25 25 H 1.09008 * 109.47148 * 240.00322 * 2 1 3 26 26 H 1.08997 * 109.47068 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46991 * 300.00187 * 3 2 1 28 28 H 1.08996 * 109.47177 * 59.99996 * 3 2 1 29 29 H 1.00891 * 111.00814 * 208.95668 * 4 2 1 30 30 H 1.09002 * 109.47072 * 60.00857 * 5 4 2 31 31 H 1.09002 * 109.47565 * 300.00399 * 5 4 2 32 32 H 1.09003 * 110.98867 * 272.29941 * 8 6 5 33 33 H 1.08996 * 110.99420 * 36.12001 * 8 6 5 34 34 H 1.08999 * 110.35214 * 204.10929 * 9 8 6 35 35 H 1.09008 * 110.35653 * 81.80030 * 9 8 6 36 36 H 1.08999 * 109.47331 * 169.15585 * 11 10 9 37 37 H 1.09000 * 109.47057 * 289.15853 * 11 10 9 38 38 H 1.08998 * 109.47676 * 300.00293 * 12 11 10 39 39 H 1.09004 * 109.47227 * 60.00037 * 12 11 10 40 40 H 0.97009 * 119.99045 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.88254 * 239.60085 * 21 10 9 42 42 H 1.09001 * 110.02167 * 118.49616 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 -2.1438 0.9806 6 6 2.5953 -2.8290 2.2488 7 1 3.5456 -2.3965 2.5616 8 6 1.5464 -2.7305 3.3877 9 6 1.9079 -3.9730 4.2479 10 7 2.2900 -5.0130 3.2690 11 6 3.3447 -5.8816 3.8084 12 6 2.9502 -6.3531 5.2094 13 6 4.0324 -7.2437 5.7631 14 1 4.9138 -7.4523 5.1746 15 6 3.8976 -7.7923 7.0208 16 7 4.8424 -8.5691 7.5041 17 14 2.3736 -7.4310 8.0389 18 1 1.3341 -8.4523 7.7533 19 1 2.7218 -7.4691 9.4820 20 1 1.8535 -6.0843 7.6906 21 6 2.7341 -4.3501 2.0291 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 2.9173 -0.3307 1.4847 30 1 2.7590 -2.3575 0.1530 31 1 1.0871 -2.5188 0.7424 32 1 1.6720 -1.8085 3.9555 33 1 0.5333 -2.8095 2.9936 34 1 1.0438 -4.2969 4.8279 35 1 2.7457 -3.7467 4.9076 36 1 3.4722 -6.7460 3.1567 37 1 4.2808 -5.3259 3.8623 38 1 2.8227 -5.4888 5.8612 39 1 2.0140 -6.9088 5.1557 40 1 4.7475 -8.9547 8.3892 41 1 2.1054 -4.6633 1.1956 42 1 3.7745 -4.6017 1.8234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719054707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:50 Heat of formation + Delta-G solvation = -35.049332 kcal Electronic energy + Delta-G solvation = -17409.339479 eV Core-core repulsion = 14808.431462 eV Total energy + Delta-G solvation = -2600.908017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27904 -38.11358 -35.70821 -34.25946 -32.28669 -30.55477 -29.67240 -28.09272 -26.43257 -24.52706 -23.21962 -21.57082 -21.12538 -20.95467 -19.01647 -17.12836 -16.83965 -16.39939 -16.17199 -15.74505 -15.53337 -15.16307 -14.79903 -14.62833 -14.17304 -13.92055 -13.47553 -13.35857 -13.08824 -12.92994 -12.82398 -12.74680 -12.34743 -12.21521 -11.99678 -11.94242 -11.80605 -11.73339 -11.64994 -11.51130 -11.37072 -11.30221 -10.78896 -9.32392 -9.19252 -8.32265 -6.36802 1.35342 1.36391 1.49147 2.34710 3.03086 3.08902 3.18623 3.74870 3.80686 3.96399 4.09217 4.22013 4.36656 4.41383 4.46151 4.47340 4.52768 4.55403 4.66491 4.79154 4.84532 4.86861 4.91991 4.99951 5.00562 5.04579 5.07410 5.13863 5.19182 5.26218 5.32456 5.41241 5.46220 5.47587 5.59292 6.08304 6.14327 6.21930 6.28895 6.51555 6.70584 7.28036 8.84489 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053452 B = 0.003917 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.708125 B = 7146.043963 C = 7350.136808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 C -0.150 4.150 4 N -0.690 5.690 5 C 0.082 3.918 6 C -0.098 4.098 7 H 0.072 0.928 8 C -0.095 4.095 9 C 0.035 3.965 10 N -0.541 5.541 11 C 0.078 3.922 12 C -0.004 4.004 13 C -0.535 4.535 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.248 1.248 21 C 0.045 3.955 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.344 0.656 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.268 0.732 41 H 0.083 0.917 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 20.074 -15.223 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.207 4.207 4 N -0.323 5.323 5 C -0.047 4.047 6 C -0.118 4.118 7 H 0.090 0.910 8 C -0.133 4.133 9 C -0.093 4.093 10 N -0.265 5.265 11 C -0.050 4.050 12 C -0.042 4.042 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.172 1.172 21 C -0.083 4.083 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.789 19.631 -14.905 26.521 hybrid contribution 1.475 -0.212 0.374 1.537 sum -8.314 19.419 -14.531 25.639 Atomic orbital electron populations 1.21780 0.94539 1.01443 1.01841 1.21555 0.96160 0.94811 0.90838 1.21932 1.00949 0.95000 1.02851 1.60492 1.33672 1.03223 1.34863 1.21823 1.00467 0.87784 0.94654 1.22297 0.99006 0.94215 0.96244 0.90978 1.22616 0.99034 0.96180 0.95478 1.23190 0.99548 0.91539 0.95014 1.63655 1.38091 1.19709 1.05061 1.22005 0.91231 0.95624 0.96146 1.19521 0.95632 0.95581 0.93417 1.21410 1.05108 1.29332 1.01492 0.95001 1.25992 0.99896 0.94181 0.98984 1.70067 1.36007 1.34244 1.18725 0.85623 0.79198 0.80291 0.77341 1.19160 1.20654 1.17174 1.22888 0.99417 0.92881 0.93109 0.91580 0.93597 0.92643 0.94125 0.92450 0.91040 0.92078 0.83784 0.94768 0.90940 0.89967 0.90585 0.91313 0.94792 0.92259 0.96328 0.95999 0.96357 0.92362 0.89859 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 71.98 0.68 -1.27 16 2 C 0.08 1.06 3.22 44.92 0.14 1.20 16 3 C -0.15 -1.67 9.18 71.98 0.66 -1.01 16 4 N -0.69 -11.26 6.17 -491.55 -3.04 -14.30 16 5 C 0.08 1.48 4.77 86.30 0.41 1.90 16 6 C -0.10 -2.19 3.10 -9.61 -0.03 -2.22 16 7 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.10 -2.31 6.43 32.15 0.21 -2.10 16 9 C 0.03 1.12 5.32 86.94 0.46 1.58 16 10 N -0.54 -18.92 5.31 -884.56 -4.70 -23.62 16 11 C 0.08 3.30 4.76 86.30 0.41 3.71 16 12 C 0.00 -0.19 3.71 29.85 0.11 -0.08 16 13 C -0.53 -31.97 9.66 25.60 0.25 -31.72 16 14 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 15 C 0.01 0.39 5.47 84.66 0.46 0.85 16 16 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 17 Si 0.95 45.57 27.47 68.60 1.88 47.46 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.25 -11.11 6.54 99.48 0.65 -10.45 16 21 C 0.05 1.24 6.46 86.64 0.56 1.80 16 22 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.04 0.72 7.45 -2.38 -0.02 0.70 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 0.58 7.80 -2.38 -0.02 0.56 16 26 H 0.06 0.59 8.12 -2.39 -0.02 0.57 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.34 5.17 8.35 -89.70 -0.75 4.42 16 30 H 0.03 0.59 8.06 -2.39 -0.02 0.57 16 31 H 0.07 1.38 7.35 -2.39 -0.02 1.36 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.03 1.19 7.02 -2.38 -0.02 1.18 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 38 H 0.02 1.06 5.53 -2.39 -0.01 1.05 16 39 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 40 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 41 H 0.08 2.08 7.82 -2.39 -0.02 2.06 16 42 H 0.05 1.37 7.50 -2.39 -0.02 1.35 16 Total: -1.00 -65.98 325.14 -1.07 -67.05 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.15 Total: 11.20 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.33 Total: -27.36 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -7.44 Total: -98.35 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.46 kcal Total: -65.98 -1.07 -67.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds