Wall clock time and date at job start Mon Mar 30 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 N 1.46899 * 109.47081 * 119.99934 * 2 1 3 5 5 C 1.46902 * 110.99742 * 155.00253 * 4 2 1 6 6 C 1.53002 * 109.46799 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.87976 * 57.38965 * 6 5 4 8 8 C 1.55135 * 110.99062 * 293.54260 * 6 5 4 9 9 C 1.54322 * 103.02006 * 206.25834 * 8 6 5 10 10 N 1.47439 * 107.23490 * 22.28319 * 9 8 6 11 11 C 1.46901 * 110.99961 * 123.25626 * 10 9 8 12 12 C 1.53000 * 109.46769 * 69.87863 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.47853 * 108.56569 * 0.99003 * 10 9 8 22 22 H 1.08997 * 109.46901 * 299.99743 * 1 2 3 23 23 H 1.08996 * 109.47309 * 60.00166 * 1 2 3 24 24 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47397 * 240.00092 * 2 1 3 26 26 H 1.09008 * 109.46990 * 300.00400 * 3 2 1 27 27 H 1.08998 * 109.47339 * 59.99617 * 3 2 1 28 28 H 1.08997 * 109.47257 * 180.02562 * 3 2 1 29 29 H 1.00895 * 111.00261 * 31.04555 * 4 2 1 30 30 H 1.08994 * 109.47331 * 60.00046 * 5 4 2 31 31 H 1.09000 * 109.47381 * 299.99689 * 5 4 2 32 32 H 1.09003 * 110.71015 * 87.87432 * 8 6 5 33 33 H 1.09004 * 110.85568 * 324.71096 * 8 6 5 34 34 H 1.09003 * 109.88473 * 262.87599 * 9 8 6 35 35 H 1.08997 * 109.88802 * 141.69469 * 9 8 6 36 36 H 1.09002 * 109.47401 * 309.87571 * 11 10 9 37 37 H 1.09001 * 109.46874 * 189.87583 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 40 40 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.36766 * 94.73414 * 21 10 9 42 42 H 1.08997 * 110.37443 * 217.07382 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9806 6 6 3.8417 -1.9481 2.2486 7 1 3.1467 -2.7380 2.5335 8 6 4.0438 -0.9400 3.4102 9 6 5.1020 -1.6344 4.2932 10 7 5.8223 -2.5952 3.4377 11 6 7.2667 -2.3271 3.4456 12 6 7.8441 -2.6845 4.8166 13 6 9.3257 -2.4089 4.8250 14 1 9.8073 -2.0184 3.9407 15 6 10.0663 -2.6554 5.9616 16 7 11.3593 -2.4154 5.9687 17 14 9.2331 -3.3301 7.4913 18 1 9.2572 -4.8145 7.4540 19 1 9.9543 -2.8536 8.6988 20 1 7.8256 -2.8588 7.5370 21 6 5.2747 -2.5077 2.0671 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.3794 -1.4181 1.4848 30 1 4.0523 -0.4219 0.7425 31 1 3.3432 -1.9444 0.1531 32 1 3.1149 -0.7969 3.9624 33 1 4.4189 0.0128 3.0364 34 1 4.6131 -2.1615 5.1125 35 1 5.7984 -0.8949 4.6883 36 1 7.4413 -1.2707 3.2419 37 1 7.7523 -2.9302 2.6784 38 1 7.3585 -2.0814 5.5838 39 1 7.6694 -3.7409 5.0203 40 1 11.8803 -2.5884 6.7684 41 1 5.8740 -1.8275 1.4618 42 1 5.2410 -3.4958 1.6082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719054709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:53 Heat of formation + Delta-G solvation = -14.720298 kcal Electronic energy + Delta-G solvation = -17365.179383 eV Core-core repulsion = 14765.152899 eV Total energy + Delta-G solvation = -2600.026484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.06362 -37.28207 -34.02818 -32.56884 -30.96456 -28.99519 -28.58204 -27.51888 -24.79925 -23.44388 -21.36662 -20.87910 -20.17133 -19.34059 -16.80749 -16.36519 -15.74788 -15.30502 -14.89307 -14.47575 -14.09427 -13.83959 -13.26515 -13.11754 -12.84096 -12.69466 -12.47705 -12.37630 -12.30245 -11.67467 -11.61828 -11.43866 -11.26087 -11.11015 -10.86673 -10.73316 -10.66432 -10.38145 -10.04058 -9.70016 -9.64464 -9.16228 -8.62741 -8.49456 -7.76806 -6.00847 -3.98680 3.36235 3.42687 3.48889 3.84684 4.43094 4.50215 4.64108 4.71209 4.85096 4.94736 5.03395 5.08633 5.34135 5.35813 5.37439 5.48846 5.51124 5.56333 5.59411 5.60667 5.71063 5.84068 5.85996 5.99620 6.05027 6.08544 6.18061 6.21910 6.30903 6.42853 6.53983 6.83296 6.83836 7.17560 7.22763 7.36416 7.61671 7.68762 7.90734 8.57156 9.03334 9.62084 11.12603 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054716 B = 0.003825 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.612612 B = 7319.089417 C = 7444.724930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.077 3.923 3 C -0.140 4.140 4 N -0.684 5.684 5 C 0.070 3.930 6 C -0.095 4.095 7 H 0.079 0.921 8 C -0.120 4.120 9 C 0.039 3.961 10 N -0.534 5.534 11 C 0.067 3.933 12 C -0.006 4.006 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.048 3.952 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.340 0.660 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.521 4.024 -11.098 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 C -0.198 4.198 4 N -0.316 5.316 5 C -0.059 4.059 6 C -0.115 4.115 7 H 0.097 0.903 8 C -0.158 4.158 9 C -0.089 4.089 10 N -0.258 5.258 11 C -0.061 4.061 12 C -0.044 4.044 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.080 4.080 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.184 4.096 -10.497 23.994 hybrid contribution -0.228 -0.313 -0.056 0.391 sum -21.412 3.783 -10.553 24.169 Atomic orbital electron populations 1.21969 0.94804 1.01816 1.02548 1.21503 0.94639 0.95695 0.91403 1.21793 1.01184 0.95287 1.01546 1.60501 1.03719 1.33246 1.34095 1.21962 0.90551 0.97458 0.95958 1.22290 0.96848 0.97549 0.94768 0.90260 1.22673 0.99162 0.97854 0.96150 1.22863 0.95646 0.93955 0.96467 1.63645 1.05194 1.49660 1.07270 1.22287 0.84802 0.98152 1.00814 1.19544 0.96028 0.96747 0.92070 1.21110 0.91216 1.43538 1.00072 0.91198 1.25002 0.94665 0.95028 0.98736 1.69919 1.06063 1.49317 1.29150 0.86738 0.80180 0.79587 0.82571 1.20253 1.21528 1.18900 1.22993 0.93381 1.00031 0.91608 0.91693 0.92053 0.92854 0.94136 0.92831 0.91968 0.92788 0.84210 0.90963 0.95272 0.91044 0.91777 0.91248 0.92283 0.95477 0.91767 0.96676 0.96243 0.92773 0.93902 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 2 C 0.08 0.63 3.22 -67.71 -0.22 0.41 16 3 C -0.14 -1.16 9.41 37.16 0.35 -0.81 16 4 N -0.68 -6.27 6.13 -106.73 -0.65 -6.93 16 5 C 0.07 0.71 4.93 -3.82 -0.02 0.70 16 6 C -0.10 -1.13 3.22 -88.48 -0.29 -1.42 16 7 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.12 -1.57 6.24 -24.91 -0.16 -1.73 16 9 C 0.04 0.63 6.20 -2.84 -0.02 0.62 16 10 N -0.53 -9.59 5.16 -231.24 -1.19 -10.78 16 11 C 0.07 1.41 4.47 -3.82 -0.02 1.39 16 12 C -0.01 -0.15 4.07 -27.88 -0.11 -0.27 16 13 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 17 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 21 C 0.05 0.70 6.15 -2.29 -0.01 0.68 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 25 H 0.04 0.34 7.80 -51.93 -0.40 -0.07 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.49 7.45 -51.93 -0.39 0.11 16 29 H 0.34 2.82 8.35 -39.29 -0.33 2.49 16 30 H 0.07 0.80 7.40 -51.93 -0.38 0.42 16 31 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.06 6.91 -51.93 -0.36 0.70 16 36 H 0.03 0.58 7.96 -51.93 -0.41 0.16 16 37 H 0.06 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.01 0.38 6.20 -51.93 -0.32 0.06 16 39 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -30.85 326.77 -9.43 -40.28 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.04 Total: -2.75 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.58 Total: -14.80 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -1.07 Total: -45.39 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.85 -9.43 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.560 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds