Wall clock time and date at job start Mon Mar 30 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 N 1.46899 * 109.47081 * 119.99934 * 2 1 3 5 5 C 1.46902 * 110.99742 * 155.00253 * 4 2 1 6 6 C 1.53002 * 109.46799 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.87976 * 57.38965 * 6 5 4 8 8 C 1.55135 * 110.99062 * 293.54260 * 6 5 4 9 9 C 1.54322 * 103.02006 * 206.25834 * 8 6 5 10 10 N 1.47439 * 107.23490 * 22.28319 * 9 8 6 11 11 C 1.46901 * 110.99961 * 123.25626 * 10 9 8 12 12 C 1.53000 * 109.46769 * 69.87863 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.47853 * 108.56569 * 0.99003 * 10 9 8 22 22 H 1.08997 * 109.46901 * 299.99743 * 1 2 3 23 23 H 1.08996 * 109.47309 * 60.00166 * 1 2 3 24 24 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47397 * 240.00092 * 2 1 3 26 26 H 1.09008 * 109.46990 * 300.00400 * 3 2 1 27 27 H 1.08998 * 109.47339 * 59.99617 * 3 2 1 28 28 H 1.08997 * 109.47257 * 180.02562 * 3 2 1 29 29 H 1.00895 * 111.00261 * 31.04555 * 4 2 1 30 30 H 1.08994 * 109.47331 * 60.00046 * 5 4 2 31 31 H 1.09000 * 109.47381 * 299.99689 * 5 4 2 32 32 H 1.09003 * 110.71015 * 87.87432 * 8 6 5 33 33 H 1.09004 * 110.85568 * 324.71096 * 8 6 5 34 34 H 1.09003 * 109.88473 * 262.87599 * 9 8 6 35 35 H 1.08997 * 109.88802 * 141.69469 * 9 8 6 36 36 H 1.09002 * 109.47401 * 309.87571 * 11 10 9 37 37 H 1.09001 * 109.46874 * 189.87583 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 40 40 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.36766 * 94.73414 * 21 10 9 42 42 H 1.08997 * 110.37443 * 217.07382 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9806 6 6 3.8417 -1.9481 2.2486 7 1 3.1467 -2.7380 2.5335 8 6 4.0438 -0.9400 3.4102 9 6 5.1020 -1.6344 4.2932 10 7 5.8223 -2.5952 3.4377 11 6 7.2667 -2.3271 3.4456 12 6 7.8441 -2.6845 4.8166 13 6 9.3257 -2.4089 4.8250 14 1 9.8073 -2.0184 3.9407 15 6 10.0663 -2.6554 5.9616 16 7 11.3593 -2.4154 5.9687 17 14 9.2331 -3.3301 7.4913 18 1 9.2572 -4.8145 7.4540 19 1 9.9543 -2.8536 8.6988 20 1 7.8256 -2.8588 7.5370 21 6 5.2747 -2.5077 2.0671 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.3794 -1.4181 1.4848 30 1 4.0523 -0.4219 0.7425 31 1 3.3432 -1.9444 0.1531 32 1 3.1149 -0.7969 3.9624 33 1 4.4189 0.0128 3.0364 34 1 4.6131 -2.1615 5.1125 35 1 5.7984 -0.8949 4.6883 36 1 7.4413 -1.2707 3.2419 37 1 7.7523 -2.9302 2.6784 38 1 7.3585 -2.0814 5.5838 39 1 7.6694 -3.7409 5.0203 40 1 11.8803 -2.5884 6.7684 41 1 5.8740 -1.8275 1.4618 42 1 5.2410 -3.4958 1.6082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719054709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:53 Heat of formation + Delta-G solvation = -36.067092 kcal Electronic energy + Delta-G solvation = -17366.105049 eV Core-core repulsion = 14765.152899 eV Total energy + Delta-G solvation = -2600.952150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24552 -38.10820 -35.70275 -34.24980 -32.35026 -30.46417 -29.73538 -28.11035 -26.45999 -24.58602 -23.04284 -21.74562 -21.16940 -20.76374 -19.01299 -17.35323 -16.73128 -16.50161 -16.14791 -15.78168 -15.31951 -15.06311 -14.94890 -14.51597 -14.24759 -13.94172 -13.44655 -13.38235 -13.15345 -12.98828 -12.93660 -12.62270 -12.50928 -12.22261 -11.97968 -11.84643 -11.78582 -11.68837 -11.59077 -11.50865 -11.38592 -11.35937 -10.78038 -9.33239 -9.20458 -8.31606 -6.36042 1.35874 1.37066 1.50453 2.35651 3.02181 3.03899 3.20242 3.79103 3.88020 3.91812 4.07531 4.19156 4.37586 4.39200 4.40874 4.46396 4.56035 4.57754 4.71313 4.74488 4.82892 4.85316 4.95793 4.97205 4.99045 5.01943 5.08570 5.11959 5.22413 5.27073 5.32541 5.40024 5.44613 5.47783 5.60456 6.11416 6.11684 6.21825 6.29167 6.54300 6.71279 7.28977 8.85172 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054716 B = 0.003825 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.612612 B = 7319.089417 C = 7444.724930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.139 4.139 4 N -0.688 5.688 5 C 0.079 3.921 6 C -0.081 4.081 7 H 0.090 0.910 8 C -0.109 4.109 9 C 0.034 3.966 10 N -0.542 5.542 11 C 0.080 3.920 12 C 0.002 3.998 13 C -0.535 4.535 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.250 1.250 21 C 0.045 3.955 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.347 0.653 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.017 0.983 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.040 0.960 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 3.461 -10.971 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 C -0.197 4.197 4 N -0.321 5.321 5 C -0.051 4.051 6 C -0.100 4.100 7 H 0.109 0.891 8 C -0.147 4.147 9 C -0.094 4.094 10 N -0.266 5.266 11 C -0.048 4.048 12 C -0.036 4.036 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.174 1.174 21 C -0.083 4.083 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.166 0.834 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.987 3.535 -10.389 26.378 hybrid contribution 0.680 -0.096 -0.175 0.709 sum -23.307 3.439 -10.564 25.819 Atomic orbital electron populations 1.21923 0.93461 1.02399 1.02835 1.21546 0.95698 0.95200 0.90909 1.21791 1.00347 0.95735 1.01864 1.60463 1.03368 1.33497 1.34798 1.21798 0.91006 0.97104 0.95173 1.22195 0.95359 0.97400 0.95056 0.89142 1.22580 0.98596 0.97482 0.96083 1.22921 0.95942 0.93507 0.97018 1.63586 1.03189 1.50231 1.09636 1.21964 0.87171 0.97327 0.98380 1.19404 0.93289 0.96486 0.94375 1.21427 0.93641 1.43301 0.98981 0.95010 1.25987 0.95260 0.95278 1.02523 1.70062 1.07853 1.50652 1.30509 0.85608 0.79602 0.79235 0.77897 1.19085 1.20682 1.17359 1.23095 0.94783 1.00839 0.89612 0.92043 0.91137 0.92127 0.94125 0.91562 0.92631 0.94053 0.83398 0.92033 0.94359 0.89471 0.92341 0.90805 0.94359 0.96471 0.92272 0.96560 0.96286 0.92370 0.94186 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.18 71.98 0.66 -0.93 16 2 C 0.08 1.07 3.22 44.92 0.14 1.21 16 3 C -0.14 -2.11 9.41 71.98 0.68 -1.43 16 4 N -0.69 -10.97 6.13 -491.57 -3.01 -13.99 16 5 C 0.08 1.43 4.93 86.30 0.43 1.86 16 6 C -0.08 -1.73 3.22 -9.41 -0.03 -1.76 16 7 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 8 C -0.11 -2.65 6.24 31.77 0.20 -2.45 16 9 C 0.03 1.07 6.20 86.65 0.54 1.61 16 10 N -0.54 -18.91 5.16 -885.51 -4.57 -23.48 16 11 C 0.08 3.38 4.47 86.30 0.39 3.77 16 12 C 0.00 0.11 4.07 29.85 0.12 0.23 16 13 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 14 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 15 C 0.01 0.39 5.47 84.66 0.46 0.85 16 16 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 17 Si 0.95 45.95 27.47 68.60 1.88 47.83 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 21 C 0.04 1.22 6.15 86.77 0.53 1.75 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 25 H 0.04 0.59 7.80 -2.39 -0.02 0.57 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.72 7.45 -2.39 -0.02 0.70 16 29 H 0.35 4.73 8.35 -89.70 -0.75 3.98 16 30 H 0.06 1.27 7.40 -2.39 -0.02 1.25 16 31 H 0.04 0.64 8.06 -2.39 -0.02 0.62 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.50 8.02 -2.38 -0.02 1.48 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.04 1.36 6.91 -2.39 -0.02 1.34 16 36 H 0.02 0.75 7.96 -2.39 -0.02 0.73 16 37 H 0.06 2.53 8.07 -2.39 -0.02 2.52 16 38 H 0.02 0.80 6.20 -2.39 -0.01 0.79 16 39 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 40 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.04 1.12 7.70 -2.39 -0.02 1.10 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.61 326.77 -0.88 -67.50 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.15 Total: 9.97 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.37 Total: -27.17 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -7.28 Total: -98.12 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -66.61 -0.88 -67.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.428 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds