Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08997 * 109.47268 * 304.30688 * 3 2 1 5 5 C 1.50701 * 109.46842 * 184.30803 * 3 2 1 6 6 H 1.08003 * 120.00057 * 239.86428 * 5 3 2 7 7 C 1.37874 * 120.00054 * 59.86540 * 5 3 2 8 8 N 1.31512 * 120.00119 * 199.92373 * 7 5 3 9 9 Si 1.86804 * 119.99989 * 19.92115 * 7 5 3 10 10 H 1.48498 * 109.47193 * 87.41868 * 9 7 5 11 11 H 1.48500 * 109.47182 * 207.41839 * 9 7 5 12 12 H 1.48495 * 109.46970 * 327.42021 * 9 7 5 13 13 N 1.46903 * 109.47099 * 64.30936 * 3 2 1 14 14 C 1.46890 * 111.00027 * 254.79331 * 13 3 2 15 15 H 1.09006 * 110.36984 * 45.81562 * 14 13 3 16 16 C 1.54382 * 110.32811 * 283.62962 * 14 13 3 17 17 N 1.48558 * 104.59529 * 217.25384 * 16 14 13 18 18 C 1.46897 * 110.99825 * 159.04012 * 17 16 14 19 19 C 1.48555 * 104.22632 * 39.47981 * 17 16 14 20 20 C 1.54266 * 110.32326 * 167.99137 * 14 13 3 21 21 C 1.53000 * 110.32424 * 237.79410 * 20 14 13 22 22 C 1.52992 * 110.32408 * 0.02562 * 20 14 13 23 23 H 1.09004 * 109.47150 * 55.65285 * 1 2 3 24 24 H 1.08998 * 109.47110 * 175.64814 * 1 2 3 25 25 H 1.09004 * 109.47503 * 295.65157 * 1 2 3 26 26 H 1.08996 * 109.47254 * 240.00212 * 2 1 3 27 27 H 1.09000 * 109.46984 * 119.99685 * 2 1 3 28 28 H 0.97000 * 120.00030 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00249 * 18.75071 * 13 3 2 30 30 H 1.09003 * 110.40762 * 336.02856 * 16 14 13 31 31 H 1.08998 * 110.41235 * 98.35200 * 16 14 13 32 32 H 1.08997 * 109.47229 * 59.87320 * 18 17 16 33 33 H 1.09001 * 109.47301 * 179.86945 * 18 17 16 34 34 H 1.08997 * 109.47305 * 299.86818 * 18 17 16 35 35 H 1.09002 * 110.40938 * 79.29394 * 19 17 16 36 36 H 1.08995 * 110.41280 * 201.61800 * 19 17 16 37 37 H 1.08993 * 109.47358 * 60.00138 * 21 20 14 38 38 H 1.08997 * 109.47102 * 180.02562 * 21 20 14 39 39 H 1.09002 * 109.47071 * 299.99701 * 21 20 14 40 40 H 1.09000 * 109.47393 * 53.63967 * 22 20 14 41 41 H 1.09004 * 109.47177 * 173.63864 * 22 20 14 42 42 H 1.09000 * 109.47043 * 293.64127 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1067 6 1 4.1396 1.8935 0.6734 7 6 4.1572 0.8711 -1.2003 8 7 5.4215 0.5154 -1.1332 9 14 3.1931 0.6002 -2.7773 10 1 3.2671 1.8215 -3.6187 11 1 3.7716 -0.5483 -3.5200 12 1 1.7744 0.3120 -2.4467 13 7 1.6371 2.1043 1.2481 14 6 0.5304 3.0413 1.0136 15 1 -0.2341 2.5773 0.3903 16 6 1.0530 4.3330 0.3488 17 7 0.2478 5.4211 0.9608 18 6 0.9259 6.7173 0.8260 19 6 0.1288 5.0285 2.3886 20 6 -0.0776 3.4989 2.3555 21 6 -1.5694 3.1629 2.4051 22 6 0.6565 2.8387 3.5242 23 1 -0.3634 0.5798 -0.8485 24 1 -0.3633 -1.0247 -0.0780 25 1 -0.3634 0.4449 0.9264 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8533 0.1121 -1.9024 29 1 1.3933 1.4264 1.9546 30 1 2.1112 4.4728 0.5697 31 1 0.8917 4.2980 -0.7286 32 1 1.0744 6.9415 -0.2303 33 1 0.3139 7.4965 1.2802 34 1 1.8925 6.6757 1.3280 35 1 1.0424 5.2772 2.9286 36 1 -0.7290 5.5199 2.8477 37 1 -1.7029 2.0860 2.3031 38 1 -1.9846 3.4921 3.3576 39 1 -2.0838 3.6716 1.5897 40 1 1.7265 3.0259 3.4335 41 1 0.2932 3.2555 4.4636 42 1 0.4730 1.7644 3.5082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722292888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 7.236686 kcal Electronic energy + Delta-G solvation = -18923.002682 eV Core-core repulsion = 16323.928324 eV Total energy + Delta-G solvation = -2599.074357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.58313 -36.17153 -34.05815 -32.13260 -30.99437 -28.36559 -27.37542 -26.90583 -25.94850 -23.29214 -22.36267 -20.95211 -19.54731 -18.52678 -16.62460 -15.65573 -15.31733 -14.82682 -14.65496 -14.12781 -13.82366 -13.40522 -13.03256 -12.93132 -12.80686 -12.58313 -12.14909 -12.07559 -11.72766 -11.60603 -11.35587 -11.20791 -10.98812 -10.94311 -10.76390 -10.52150 -10.40888 -10.37066 -10.01598 -9.82132 -9.37523 -9.28075 -8.30645 -8.24355 -7.29987 -6.05597 -3.93429 3.29652 3.38664 3.41935 4.27415 4.46143 4.76594 4.92650 5.04332 5.22028 5.29034 5.47330 5.59319 5.64258 5.70565 5.78446 5.80781 5.82966 5.85016 5.89938 5.95562 5.99691 6.03823 6.09953 6.23000 6.30187 6.38304 6.46285 6.47073 6.53617 6.64020 6.67134 6.79476 6.90550 7.08150 7.24675 7.26815 7.82549 8.02348 8.39370 8.76247 9.14251 9.63997 11.07885 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.008240 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.105264 B = 3397.312583 C = 3817.361353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C 0.194 3.806 4 H 0.019 0.981 5 C -0.500 4.500 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.853 3.147 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.254 1.254 13 N -0.666 5.666 14 C 0.092 3.908 15 H 0.044 0.956 16 C 0.043 3.957 17 N -0.520 5.520 18 C 0.016 3.984 19 C 0.046 3.954 20 C -0.069 4.069 21 C -0.133 4.133 22 C -0.135 4.135 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 6.125 6.011 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.085 3.915 4 H 0.037 0.963 5 C -0.538 4.538 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.529 5.529 9 Si 0.681 3.319 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.179 1.179 13 N -0.298 5.298 14 C -0.019 4.019 15 H 0.062 0.938 16 C -0.085 4.085 17 N -0.244 5.244 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.070 4.070 21 C -0.190 4.190 22 C -0.193 4.193 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.242 6.594 5.602 14.991 hybrid contribution -0.272 -0.861 -0.872 1.256 sum -12.514 5.733 4.729 14.554 Atomic orbital electron populations 1.21928 0.98531 1.00142 1.00504 1.22615 0.92704 1.01610 1.02049 1.19547 0.96473 0.88108 0.87397 0.96299 1.20963 0.89071 1.36909 1.06831 0.90338 1.24886 0.94719 0.94661 0.98591 1.70023 1.12238 1.40495 1.30126 0.87413 0.81798 0.77774 0.84947 1.20754 1.21623 1.17898 1.60852 1.35932 1.21806 1.11250 1.22253 0.92134 0.93667 0.93862 0.93843 1.23164 0.96934 0.89724 0.98716 1.65337 1.45332 1.02181 1.11504 1.22461 0.96937 0.92005 1.01944 1.23147 1.00329 0.94781 0.89922 1.21381 0.95275 0.94505 0.95848 1.21834 0.94862 1.00960 1.01391 1.21768 1.01839 0.99822 0.95823 0.93661 0.94019 0.93661 0.92009 0.92390 0.92881 0.84845 0.91711 0.91008 0.91543 0.91885 0.95257 0.93676 0.90932 0.93033 0.93045 0.92235 0.90572 0.93579 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.74 37.16 0.32 -2.35 16 2 C -0.15 -3.18 4.52 -26.73 -0.12 -3.30 16 3 C 0.19 4.40 1.52 -68.86 -0.10 4.30 16 4 H 0.02 0.46 6.23 -51.93 -0.32 0.13 16 5 C -0.50 -13.81 9.29 -34.44 -0.32 -14.13 16 6 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 7 C 0.07 2.08 5.26 -17.82 -0.09 1.99 16 8 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 9 Si 0.85 21.05 25.83 -169.99 -4.39 16.66 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.89 5.52 56.52 0.31 -5.58 16 13 N -0.67 -12.99 4.79 -99.50 -0.48 -13.46 16 14 C 0.09 1.57 2.27 -66.33 -0.15 1.42 16 15 H 0.04 0.77 6.27 -51.93 -0.33 0.45 16 16 C 0.04 0.75 5.64 -2.18 -0.01 0.74 16 17 N -0.52 -7.80 5.66 -238.24 -1.35 -9.15 16 18 C 0.02 0.20 9.53 60.06 0.57 0.78 16 19 C 0.05 0.64 5.58 -2.18 -0.01 0.62 16 20 C -0.07 -0.97 1.03 -153.13 -0.16 -1.13 16 21 C -0.13 -1.63 8.24 37.16 0.31 -1.33 16 22 C -0.13 -1.81 7.18 37.15 0.27 -1.54 16 23 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.72 6.85 -51.93 -0.36 0.36 16 26 H 0.06 1.40 4.63 -51.93 -0.24 1.16 16 27 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.33 6.06 5.43 -39.29 -0.21 5.85 16 30 H 0.06 1.28 7.89 -51.93 -0.41 0.87 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 35 H 0.04 0.63 7.62 -51.93 -0.40 0.24 16 36 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.71 7.08 -51.93 -0.37 0.34 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -28.93 311.81 -7.96 -36.89 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.71 Total: 4.57 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.50 Total: -13.93 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.05 Total: -48.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.39 Total: 16.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.93 -7.96 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.131 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds