Wall clock time and date at job start Mon Mar 30 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 H 1.08997 * 109.47268 * 304.30688 * 3 2 1 5 5 C 1.50701 * 109.46842 * 184.30803 * 3 2 1 6 6 H 1.08003 * 120.00057 * 239.86428 * 5 3 2 7 7 C 1.37874 * 120.00054 * 59.86540 * 5 3 2 8 8 N 1.31512 * 120.00119 * 199.92373 * 7 5 3 9 9 Si 1.86804 * 119.99989 * 19.92115 * 7 5 3 10 10 H 1.48498 * 109.47193 * 87.41868 * 9 7 5 11 11 H 1.48500 * 109.47182 * 207.41839 * 9 7 5 12 12 H 1.48495 * 109.46970 * 327.42021 * 9 7 5 13 13 N 1.46903 * 109.47099 * 64.30936 * 3 2 1 14 14 C 1.46890 * 111.00027 * 254.79331 * 13 3 2 15 15 H 1.09006 * 110.36984 * 45.81562 * 14 13 3 16 16 C 1.54382 * 110.32811 * 283.62962 * 14 13 3 17 17 N 1.48558 * 104.59529 * 217.25384 * 16 14 13 18 18 C 1.46897 * 110.99825 * 159.04012 * 17 16 14 19 19 C 1.48555 * 104.22632 * 39.47981 * 17 16 14 20 20 C 1.54266 * 110.32326 * 167.99137 * 14 13 3 21 21 C 1.53000 * 110.32424 * 237.79410 * 20 14 13 22 22 C 1.52992 * 110.32408 * 0.02562 * 20 14 13 23 23 H 1.09004 * 109.47150 * 55.65285 * 1 2 3 24 24 H 1.08998 * 109.47110 * 175.64814 * 1 2 3 25 25 H 1.09004 * 109.47503 * 295.65157 * 1 2 3 26 26 H 1.08996 * 109.47254 * 240.00212 * 2 1 3 27 27 H 1.09000 * 109.46984 * 119.99685 * 2 1 3 28 28 H 0.97000 * 120.00030 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00249 * 18.75071 * 13 3 2 30 30 H 1.09003 * 110.40762 * 336.02856 * 16 14 13 31 31 H 1.08998 * 110.41235 * 98.35200 * 16 14 13 32 32 H 1.08997 * 109.47229 * 59.87320 * 18 17 16 33 33 H 1.09001 * 109.47301 * 179.86945 * 18 17 16 34 34 H 1.08997 * 109.47305 * 299.86818 * 18 17 16 35 35 H 1.09002 * 110.40938 * 79.29394 * 19 17 16 36 36 H 1.08995 * 110.41280 * 201.61800 * 19 17 16 37 37 H 1.08993 * 109.47358 * 60.00138 * 21 20 14 38 38 H 1.08997 * 109.47102 * 180.02562 * 21 20 14 39 39 H 1.09002 * 109.47071 * 299.99701 * 21 20 14 40 40 H 1.09000 * 109.47393 * 53.63967 * 22 20 14 41 41 H 1.09004 * 109.47177 * 173.63864 * 22 20 14 42 42 H 1.09000 * 109.47043 * 293.64127 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1067 6 1 4.1396 1.8935 0.6734 7 6 4.1572 0.8711 -1.2003 8 7 5.4215 0.5154 -1.1332 9 14 3.1931 0.6002 -2.7773 10 1 3.2671 1.8215 -3.6187 11 1 3.7716 -0.5483 -3.5200 12 1 1.7744 0.3120 -2.4467 13 7 1.6371 2.1043 1.2481 14 6 0.5304 3.0413 1.0136 15 1 -0.2341 2.5773 0.3903 16 6 1.0530 4.3330 0.3488 17 7 0.2478 5.4211 0.9608 18 6 0.9259 6.7173 0.8260 19 6 0.1288 5.0285 2.3886 20 6 -0.0776 3.4989 2.3555 21 6 -1.5694 3.1629 2.4051 22 6 0.6565 2.8387 3.5242 23 1 -0.3634 0.5798 -0.8485 24 1 -0.3633 -1.0247 -0.0780 25 1 -0.3634 0.4449 0.9264 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8533 0.1121 -1.9024 29 1 1.3933 1.4264 1.9546 30 1 2.1112 4.4728 0.5697 31 1 0.8917 4.2980 -0.7286 32 1 1.0744 6.9415 -0.2303 33 1 0.3139 7.4965 1.2802 34 1 1.8925 6.6757 1.3280 35 1 1.0424 5.2772 2.9286 36 1 -0.7290 5.5199 2.8477 37 1 -1.7029 2.0860 2.3031 38 1 -1.9846 3.4921 3.3576 39 1 -2.0838 3.6716 1.5897 40 1 1.7265 3.0259 3.4335 41 1 0.2932 3.2555 4.4636 42 1 0.4730 1.7644 3.5082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722292888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:31 Heat of formation + Delta-G solvation = -13.425642 kcal Electronic energy + Delta-G solvation = -18923.898668 eV Core-core repulsion = 16323.928324 eV Total energy + Delta-G solvation = -2599.970343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85662 -37.78237 -35.31373 -34.18309 -32.45924 -29.83416 -28.88740 -27.95956 -27.31961 -24.74953 -23.92058 -22.36427 -21.20540 -19.82038 -18.62342 -17.14589 -16.67132 -16.41247 -16.11223 -15.52478 -15.27901 -14.86955 -14.50880 -14.35829 -14.06124 -13.94466 -13.66764 -13.43885 -13.10472 -12.95553 -12.66997 -12.50978 -12.41894 -12.38138 -12.32019 -12.18482 -11.76497 -11.60577 -11.50092 -11.38130 -11.24777 -11.05976 -10.45833 -9.48364 -8.90925 -8.27621 -6.19249 1.31703 1.36826 1.44110 2.36196 3.00635 3.08572 3.60109 3.71300 3.73583 4.09936 4.30063 4.34282 4.37651 4.46189 4.48870 4.50180 4.56342 4.58519 4.75687 4.82251 4.87236 4.88373 4.95358 4.97008 5.03885 5.08489 5.10780 5.18059 5.22440 5.25295 5.28872 5.43686 5.52279 5.58499 5.77094 5.84146 6.07718 6.15065 6.76993 6.85023 6.88780 7.42394 8.89916 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.008240 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.105264 B = 3397.312583 C = 3817.361353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.202 3.798 4 H 0.013 0.987 5 C -0.503 4.503 6 H 0.030 0.970 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.918 3.082 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.227 1.227 13 N -0.673 5.673 14 C 0.092 3.908 15 H 0.045 0.955 16 C 0.044 3.956 17 N -0.518 5.518 18 C 0.014 3.986 19 C 0.047 3.953 20 C -0.065 4.065 21 C -0.127 4.127 22 C -0.131 4.131 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.339 0.661 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.739 6.312 6.410 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C 0.092 3.908 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.048 0.952 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.743 3.257 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.150 1.150 13 N -0.307 5.307 14 C -0.019 4.019 15 H 0.063 0.937 16 C -0.085 4.085 17 N -0.242 5.242 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.066 4.066 21 C -0.184 4.184 22 C -0.189 4.189 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.639 6.792 6.022 18.083 hybrid contribution 0.853 -0.833 -0.888 1.487 sum -14.786 5.959 5.133 16.748 Atomic orbital electron populations 1.21824 0.95009 1.01859 1.01431 1.22471 0.95793 0.99505 1.01084 1.19288 0.93105 0.89728 0.88648 0.96881 1.21248 0.91762 1.35680 1.05411 0.95172 1.25685 0.95644 0.94683 1.01972 1.70162 1.14389 1.42441 1.31183 0.86359 0.81771 0.77457 0.80126 1.20802 1.21530 1.14968 1.60660 1.37892 1.22092 1.10041 1.22303 0.91161 0.92504 0.95947 0.93718 1.23036 0.95457 0.91530 0.98452 1.65361 1.44511 1.02034 1.12314 1.22538 0.96975 0.91695 1.02260 1.23236 1.01027 0.94808 0.89049 1.21404 0.96612 0.94592 0.93990 1.21785 0.92871 1.01239 1.02535 1.21709 1.00118 1.00220 0.96816 0.93606 0.91769 0.92030 0.93642 0.92833 0.92859 0.83969 0.95023 0.92137 0.91502 0.89305 0.96092 0.94398 0.88437 0.92693 0.90812 0.92540 0.93278 0.91116 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.74 71.98 0.63 -3.89 16 2 C -0.15 -6.10 4.52 30.60 0.14 -5.96 16 3 C 0.20 9.20 1.52 44.17 0.07 9.26 16 4 H 0.01 0.63 6.23 -2.39 -0.01 0.61 16 5 C -0.50 -28.86 9.29 25.60 0.24 -28.63 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 7 C 0.02 1.03 5.26 84.65 0.45 1.48 16 8 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 9 Si 0.92 43.99 25.83 68.60 1.77 45.76 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.23 -9.77 5.52 99.48 0.55 -9.22 16 13 N -0.67 -26.26 4.79 -468.72 -2.24 -28.51 16 14 C 0.09 3.01 2.27 45.82 0.10 3.12 16 15 H 0.04 1.48 6.27 -2.38 -0.01 1.47 16 16 C 0.04 1.55 5.64 86.45 0.49 2.04 16 17 N -0.52 -14.79 5.66 -907.65 -5.14 -19.92 16 18 C 0.01 0.35 9.53 127.69 1.22 1.56 16 19 C 0.05 1.17 5.58 86.45 0.48 1.65 16 20 C -0.07 -1.67 1.03 -51.29 -0.05 -1.72 16 21 C -0.13 -2.62 8.24 71.98 0.59 -2.02 16 22 C -0.13 -3.24 7.18 71.98 0.52 -2.72 16 23 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.73 6.85 -2.38 -0.02 1.71 16 26 H 0.04 1.99 4.63 -2.39 -0.01 1.98 16 27 H 0.05 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.34 12.16 5.43 -89.69 -0.49 11.67 16 30 H 0.03 1.30 7.89 -2.39 -0.02 1.29 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.02 0.54 7.97 -2.39 -0.02 0.53 16 35 H 0.04 1.01 7.62 -2.39 -0.02 0.99 16 36 H 0.10 2.00 7.86 -2.39 -0.02 1.98 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.48 7.54 -2.39 -0.02 1.46 16 41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.06 1.38 7.08 -2.39 -0.02 1.36 16 Total: -1.00 -64.95 311.81 -0.12 -65.07 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.32 Total: 22.53 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.87 Total: -25.83 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -7.08 Total: -107.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.77 Total: 45.76 kcal Total: -64.95 -0.12 -65.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.648 kcal (2) G-P(sol) polarization free energy of solvation -64.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds