Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 H 1.08994 * 109.46977 * 304.02176 * 3 2 1 5 5 C 1.50701 * 109.46714 * 184.02302 * 3 2 1 6 6 H 1.08004 * 120.00014 * 245.12594 * 5 3 2 7 7 C 1.37879 * 120.00144 * 65.12649 * 5 3 2 8 8 N 1.31511 * 119.99996 * 9.19510 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 189.19618 * 7 5 3 10 10 H 1.48502 * 109.47098 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47278 * 300.00381 * 9 7 5 12 12 H 1.48503 * 109.47031 * 60.00045 * 9 7 5 13 13 N 1.46897 * 109.47195 * 64.02708 * 3 2 1 14 14 C 1.46899 * 110.99746 * 205.74412 * 13 3 2 15 15 H 1.09001 * 110.28868 * 317.91871 * 14 13 3 16 16 C 1.54375 * 110.32972 * 80.16060 * 14 13 3 17 17 N 1.48557 * 104.59543 * 142.74538 * 16 14 13 18 18 C 1.46906 * 110.99927 * 200.95993 * 17 16 14 19 19 C 1.48552 * 104.22594 * 320.52120 * 17 16 14 20 20 C 1.54263 * 110.32381 * 195.80254 * 14 13 3 21 21 C 1.53005 * 110.32129 * 359.97438 * 20 14 13 22 22 C 1.52996 * 110.32869 * 122.20376 * 20 14 13 23 23 H 1.08998 * 109.46979 * 64.46682 * 1 2 3 24 24 H 1.09001 * 109.47171 * 184.47140 * 1 2 3 25 25 H 1.09002 * 109.46744 * 304.46812 * 1 2 3 26 26 H 1.09000 * 109.46805 * 239.99947 * 2 1 3 27 27 H 1.08999 * 109.47079 * 120.00287 * 2 1 3 28 28 H 0.97002 * 119.99831 * 357.30509 * 8 7 5 29 29 H 1.00901 * 111.00691 * 81.78638 * 13 3 2 30 30 H 1.08992 * 110.41155 * 261.53105 * 16 14 13 31 31 H 1.09000 * 110.40928 * 23.97055 * 16 14 13 32 32 H 1.09007 * 109.46610 * 175.42010 * 18 17 16 33 33 H 1.08994 * 109.46924 * 295.42269 * 18 17 16 34 34 H 1.08996 * 109.46649 * 55.42567 * 18 17 16 35 35 H 1.09004 * 110.41203 * 280.70413 * 19 17 16 36 36 H 1.08999 * 110.41460 * 158.26109 * 19 17 16 37 37 H 1.08996 * 109.46953 * 65.90253 * 21 20 14 38 38 H 1.09005 * 109.46847 * 185.90551 * 21 20 14 39 39 H 1.09001 * 109.46919 * 305.89839 * 21 20 14 40 40 H 1.08998 * 109.46973 * 59.99666 * 22 20 14 41 41 H 1.08997 * 109.47305 * 180.02562 * 22 20 14 42 42 H 1.09000 * 109.47089 * 300.00279 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6190 1.9766 -0.8517 5 6 3.5437 1.4436 -0.0997 6 1 4.1390 1.8175 0.7203 7 6 4.1596 0.9673 -1.2376 8 7 3.4429 0.6819 -2.3027 9 14 6.0119 0.7275 -1.2665 10 1 6.4232 0.2087 -2.5958 11 1 6.6834 2.0274 -1.0124 12 1 6.4016 -0.2449 -0.2140 13 7 1.6314 2.1063 1.2451 14 6 1.5383 3.5607 1.0601 15 1 2.3796 3.9210 0.4681 16 6 0.2031 3.9303 0.3791 17 7 -0.2087 5.2017 1.0280 18 6 -1.6513 5.4302 0.8700 19 6 0.1471 5.0137 2.4579 20 6 1.5015 4.2734 2.4278 21 6 1.5725 3.2496 3.5626 22 6 2.6554 5.2720 2.5379 23 1 -0.3633 0.4430 -0.9273 24 1 -0.3633 -1.0245 0.0801 25 1 -0.3633 0.5816 0.8473 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4772 0.7691 -2.2752 29 1 2.2602 1.8774 2.0003 30 1 0.3505 4.0796 -0.6904 31 1 -0.5417 3.1544 0.5564 32 1 -1.9401 6.3243 1.4226 33 1 -1.8843 5.5647 -0.1863 34 1 -2.1996 4.5712 1.2566 35 1 -0.6064 4.4073 2.9606 36 1 0.2523 5.9787 2.9536 37 1 2.5435 2.7547 3.5451 38 1 1.4403 3.7569 4.5183 39 1 0.7842 2.5081 3.4328 40 1 2.5685 6.0163 1.7464 41 1 2.6165 5.7666 3.5084 42 1 3.6037 4.7439 2.4374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722292889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = -7.350561 kcal Electronic energy + Delta-G solvation = -18866.948142 eV Core-core repulsion = 16267.241235 eV Total energy + Delta-G solvation = -2599.706908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.48264 -35.97790 -34.12580 -32.02215 -30.92891 -28.32102 -27.05946 -26.62081 -25.22506 -23.30657 -22.63488 -20.87849 -19.52035 -18.36259 -17.01277 -15.54003 -15.37334 -14.48551 -14.19360 -14.05740 -13.75662 -13.44353 -12.98602 -12.91870 -12.63003 -12.37249 -12.14919 -11.91465 -11.63375 -11.40802 -11.28889 -11.09928 -10.91689 -10.71488 -10.53743 -10.41182 -10.34544 -10.14383 -10.05577 -9.70420 -9.57333 -8.89451 -8.27937 -8.26605 -7.26521 -6.32890 -4.09575 3.41508 3.42991 3.61395 4.27082 4.51526 4.83594 4.98828 5.15621 5.30991 5.37286 5.48733 5.55299 5.69608 5.75697 5.84653 5.89919 5.91856 5.97040 6.02035 6.16858 6.18532 6.22907 6.25405 6.36415 6.43614 6.48646 6.52120 6.64652 6.77545 6.85997 6.91932 7.04095 7.19730 7.24559 7.38952 7.55378 7.99153 8.09756 8.47997 8.62946 8.83593 9.63491 11.00083 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.007858 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.390879 B = 3562.205747 C = 4005.712742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.024 0.976 5 C -0.626 4.626 6 H 0.046 0.954 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 1.061 2.939 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.679 5.679 14 C 0.099 3.901 15 H 0.056 0.944 16 C 0.045 3.955 17 N -0.518 5.518 18 C 0.016 3.984 19 C 0.047 3.953 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.133 4.133 23 H 0.036 0.964 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.272 0.728 29 H 0.334 0.666 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 6.532 8.913 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.093 3.907 4 H 0.042 0.958 5 C -0.665 4.665 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.542 5.542 9 Si 0.890 3.110 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.311 5.311 14 C -0.012 4.012 15 H 0.074 0.926 16 C -0.083 4.083 17 N -0.242 5.242 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.070 4.070 21 C -0.191 4.191 22 C -0.190 4.190 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.573 6.427 7.578 11.392 hybrid contribution -0.753 -0.011 1.197 1.414 sum -6.326 6.417 8.775 12.577 Atomic orbital electron populations 1.21725 0.98390 0.98914 1.00699 1.21548 0.92787 0.99619 1.00664 1.19238 0.93593 0.90402 0.87470 0.95773 1.22577 0.92249 1.46763 1.04910 0.93544 1.25675 1.06578 0.93621 0.92027 1.70799 1.08622 1.46022 1.28743 0.83656 0.74870 0.76462 0.76032 1.20796 1.21652 1.21485 1.61041 1.55391 1.05436 1.09224 1.22043 0.96049 0.89617 0.93477 0.92599 1.23160 0.97171 0.89252 0.98714 1.65323 1.15023 1.33798 1.10030 1.22463 0.88610 1.00202 1.02001 1.23152 0.95993 0.99184 0.89828 1.21389 0.94469 0.95214 0.95971 1.21760 1.02608 0.98591 0.96177 1.21817 0.97555 0.98663 1.00984 0.94526 0.95280 0.92619 0.92144 0.94011 0.91638 0.84610 0.90984 0.92950 0.91851 0.91555 0.95584 0.93996 0.90898 0.92418 0.93647 0.91247 0.92205 0.93306 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.85 37.16 0.37 -2.38 16 2 C -0.11 -2.47 5.31 -26.73 -0.14 -2.61 16 3 C 0.20 4.84 1.46 -68.87 -0.10 4.73 16 4 H 0.02 0.65 6.85 -51.93 -0.36 0.29 16 5 C -0.63 -16.88 8.26 -34.44 -0.28 -17.16 16 6 H 0.05 1.26 7.71 -52.48 -0.40 0.86 16 7 C 0.03 0.75 5.17 -17.82 -0.09 0.65 16 8 N -0.91 -26.67 13.02 55.43 0.72 -25.95 16 9 Si 1.06 24.95 29.91 -169.99 -5.08 19.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.71 4.41 -99.51 -0.44 -14.14 16 14 C 0.10 1.87 2.83 -66.33 -0.19 1.68 16 15 H 0.06 1.24 7.37 -51.93 -0.38 0.86 16 16 C 0.05 0.81 5.68 -2.19 -0.01 0.79 16 17 N -0.52 -8.01 5.66 -238.24 -1.35 -9.36 16 18 C 0.02 0.21 9.53 60.07 0.57 0.78 16 19 C 0.05 0.66 5.58 -2.19 -0.01 0.65 16 20 C -0.07 -1.07 1.03 -153.12 -0.16 -1.23 16 21 C -0.13 -1.90 7.15 37.16 0.27 -1.63 16 22 C -0.13 -1.93 8.24 37.16 0.31 -1.62 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.06 7.60 -51.93 -0.39 0.66 16 26 H 0.06 1.54 6.34 -51.93 -0.33 1.21 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.27 7.98 6.04 -40.82 -0.25 7.73 16 29 H 0.33 6.76 5.81 -39.29 -0.23 6.53 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 0.96 7.82 -51.93 -0.41 0.55 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.33 7.97 -51.93 -0.41 -0.09 16 35 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 36 H 0.07 0.94 7.86 -51.93 -0.41 0.54 16 37 H 0.06 0.85 7.04 -51.93 -0.37 0.49 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.04 7.56 -51.93 -0.39 0.65 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -27.95 319.49 -8.57 -36.52 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.75 Total: 5.59 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 0.52 Total: -17.34 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -1.07 Total: -49.45 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.95 -8.57 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.166 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds