Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 H 1.08994 * 109.46977 * 304.02176 * 3 2 1 5 5 C 1.50701 * 109.46714 * 184.02302 * 3 2 1 6 6 H 1.08004 * 120.00014 * 245.12594 * 5 3 2 7 7 C 1.37879 * 120.00144 * 65.12649 * 5 3 2 8 8 N 1.31511 * 119.99996 * 9.19510 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 189.19618 * 7 5 3 10 10 H 1.48502 * 109.47098 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47278 * 300.00381 * 9 7 5 12 12 H 1.48503 * 109.47031 * 60.00045 * 9 7 5 13 13 N 1.46897 * 109.47195 * 64.02708 * 3 2 1 14 14 C 1.46899 * 110.99746 * 205.74412 * 13 3 2 15 15 H 1.09001 * 110.28868 * 317.91871 * 14 13 3 16 16 C 1.54375 * 110.32972 * 80.16060 * 14 13 3 17 17 N 1.48557 * 104.59543 * 142.74538 * 16 14 13 18 18 C 1.46906 * 110.99927 * 200.95993 * 17 16 14 19 19 C 1.48552 * 104.22594 * 320.52120 * 17 16 14 20 20 C 1.54263 * 110.32381 * 195.80254 * 14 13 3 21 21 C 1.53005 * 110.32129 * 359.97438 * 20 14 13 22 22 C 1.52996 * 110.32869 * 122.20376 * 20 14 13 23 23 H 1.08998 * 109.46979 * 64.46682 * 1 2 3 24 24 H 1.09001 * 109.47171 * 184.47140 * 1 2 3 25 25 H 1.09002 * 109.46744 * 304.46812 * 1 2 3 26 26 H 1.09000 * 109.46805 * 239.99947 * 2 1 3 27 27 H 1.08999 * 109.47079 * 120.00287 * 2 1 3 28 28 H 0.97002 * 119.99831 * 357.30509 * 8 7 5 29 29 H 1.00901 * 111.00691 * 81.78638 * 13 3 2 30 30 H 1.08992 * 110.41155 * 261.53105 * 16 14 13 31 31 H 1.09000 * 110.40928 * 23.97055 * 16 14 13 32 32 H 1.09007 * 109.46610 * 175.42010 * 18 17 16 33 33 H 1.08994 * 109.46924 * 295.42269 * 18 17 16 34 34 H 1.08996 * 109.46649 * 55.42567 * 18 17 16 35 35 H 1.09004 * 110.41203 * 280.70413 * 19 17 16 36 36 H 1.08999 * 110.41460 * 158.26109 * 19 17 16 37 37 H 1.08996 * 109.46953 * 65.90253 * 21 20 14 38 38 H 1.09005 * 109.46847 * 185.90551 * 21 20 14 39 39 H 1.09001 * 109.46919 * 305.89839 * 21 20 14 40 40 H 1.08998 * 109.46973 * 59.99666 * 22 20 14 41 41 H 1.08997 * 109.47305 * 180.02562 * 22 20 14 42 42 H 1.09000 * 109.47089 * 300.00279 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6190 1.9766 -0.8517 5 6 3.5437 1.4436 -0.0997 6 1 4.1390 1.8175 0.7203 7 6 4.1596 0.9673 -1.2376 8 7 3.4429 0.6819 -2.3027 9 14 6.0119 0.7275 -1.2665 10 1 6.4232 0.2087 -2.5958 11 1 6.6834 2.0274 -1.0124 12 1 6.4016 -0.2449 -0.2140 13 7 1.6314 2.1063 1.2451 14 6 1.5383 3.5607 1.0601 15 1 2.3796 3.9210 0.4681 16 6 0.2031 3.9303 0.3791 17 7 -0.2087 5.2017 1.0280 18 6 -1.6513 5.4302 0.8700 19 6 0.1471 5.0137 2.4579 20 6 1.5015 4.2734 2.4278 21 6 1.5725 3.2496 3.5626 22 6 2.6554 5.2720 2.5379 23 1 -0.3633 0.4430 -0.9273 24 1 -0.3633 -1.0245 0.0801 25 1 -0.3633 0.5816 0.8473 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4772 0.7691 -2.2752 29 1 2.2602 1.8774 2.0003 30 1 0.3505 4.0796 -0.6904 31 1 -0.5417 3.1544 0.5564 32 1 -1.9401 6.3243 1.4226 33 1 -1.8843 5.5647 -0.1863 34 1 -2.1996 4.5712 1.2566 35 1 -0.6064 4.4073 2.9606 36 1 0.2523 5.9787 2.9536 37 1 2.5435 2.7547 3.5451 38 1 1.4403 3.7569 4.5183 39 1 0.7842 2.5081 3.4328 40 1 2.5685 6.0163 1.7464 41 1 2.6165 5.7666 3.5084 42 1 3.6037 4.7439 2.4374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722292889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = -25.398271 kcal Electronic energy + Delta-G solvation = -18867.730750 eV Core-core repulsion = 16267.241235 eV Total energy + Delta-G solvation = -2600.489515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84012 -37.76213 -35.46359 -33.93892 -32.61106 -29.74254 -28.39122 -27.85825 -26.93800 -25.05619 -24.12304 -22.34493 -21.32647 -19.70615 -19.05272 -17.01892 -16.72467 -15.91718 -15.80100 -15.64791 -15.38355 -14.86930 -14.70091 -14.13662 -14.09652 -13.82839 -13.79151 -13.36782 -12.98526 -12.86845 -12.60036 -12.55467 -12.41605 -12.30782 -12.24280 -12.00644 -11.87426 -11.67978 -11.62449 -11.44757 -11.14514 -10.86841 -10.41544 -9.48175 -9.12610 -8.50805 -6.32916 1.49293 1.55880 1.74917 2.54680 3.02034 3.18791 3.55627 3.67676 3.73781 4.06500 4.29312 4.38544 4.42376 4.46309 4.52732 4.54068 4.56790 4.69609 4.73295 4.81095 4.83575 4.85379 4.94679 4.95986 5.02293 5.06997 5.14251 5.19518 5.25006 5.33709 5.40380 5.44767 5.49848 5.67005 5.80759 5.97302 6.04132 6.09147 6.54307 6.58839 6.83521 7.48466 8.76772 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.007858 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.390879 B = 3562.205747 C = 4005.712742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.209 3.791 4 H -0.008 1.008 5 C -0.633 4.633 6 H 0.041 0.959 7 C -0.023 4.023 8 N -0.931 5.931 9 Si 1.105 2.895 10 H -0.285 1.285 11 H -0.278 1.278 12 H -0.271 1.271 13 N -0.662 5.662 14 C 0.096 3.904 15 H 0.013 0.987 16 C 0.054 3.946 17 N -0.528 5.528 18 C 0.016 3.984 19 C 0.052 3.948 20 C -0.067 4.067 21 C -0.128 4.128 22 C -0.128 4.128 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.336 0.664 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 7.269 11.129 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.099 3.901 4 H 0.010 0.990 5 C -0.672 4.672 6 H 0.059 0.941 7 C -0.223 4.223 8 N -0.568 5.568 9 Si 0.928 3.072 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.196 1.196 13 N -0.294 5.294 14 C -0.015 4.015 15 H 0.031 0.969 16 C -0.074 4.074 17 N -0.252 5.252 18 C -0.133 4.133 19 C -0.076 4.076 20 C -0.068 4.068 21 C -0.186 4.186 22 C -0.186 4.186 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.171 7.178 9.819 13.639 hybrid contribution -0.605 -0.180 0.518 0.816 sum -6.776 6.998 10.337 14.204 Atomic orbital electron populations 1.21582 0.95524 1.00525 1.00776 1.21400 0.95303 0.98197 0.99123 1.19027 0.91952 0.91110 0.87984 0.99024 1.22925 0.93972 1.45817 1.04490 0.94106 1.26986 1.10270 0.93180 0.91827 1.70908 1.08103 1.48037 1.29712 0.83080 0.70497 0.77296 0.76320 1.21086 1.20329 1.19589 1.61027 1.54597 1.06334 1.07410 1.22054 0.95073 0.88740 0.95645 0.96898 1.22921 0.96485 0.90538 0.97504 1.65306 1.17092 1.31892 1.10874 1.22541 0.86762 1.01392 1.02592 1.23189 0.95035 1.00280 0.89076 1.21414 0.95893 0.95518 0.93953 1.21703 1.01733 0.98176 0.96967 1.21775 0.96353 0.98133 1.02299 0.95052 0.92973 0.91748 0.95097 0.93972 0.92905 0.84461 0.93474 0.93391 0.89448 0.91565 0.95179 0.93037 0.88655 0.93437 0.90675 0.91977 0.93215 0.90255 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.85 71.98 0.71 -4.19 16 2 C -0.10 -4.74 5.31 30.60 0.16 -4.58 16 3 C 0.21 10.34 1.46 44.17 0.06 10.40 16 4 H -0.01 -0.46 6.85 -2.39 -0.02 -0.47 16 5 C -0.63 -35.03 8.26 25.60 0.21 -34.82 16 6 H 0.04 2.25 7.71 -2.91 -0.02 2.23 16 7 C -0.02 -1.29 5.17 84.66 0.44 -0.85 16 8 N -0.93 -56.54 13.02 21.45 0.28 -56.26 16 9 Si 1.10 50.64 29.91 68.60 2.05 52.69 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.66 -27.04 4.41 -468.75 -2.07 -29.11 16 14 C 0.10 3.68 2.83 45.81 0.13 3.81 16 15 H 0.01 0.60 7.37 -2.39 -0.02 0.59 16 16 C 0.05 1.96 5.68 86.45 0.49 2.45 16 17 N -0.53 -15.55 5.66 -907.65 -5.14 -20.69 16 18 C 0.02 0.36 9.53 127.69 1.22 1.58 16 19 C 0.05 1.32 5.58 86.45 0.48 1.81 16 20 C -0.07 -1.95 1.03 -51.28 -0.05 -2.00 16 21 C -0.13 -3.33 7.15 71.98 0.51 -2.82 16 22 C -0.13 -3.53 8.24 71.98 0.59 -2.94 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.36 7.60 -2.39 -0.02 2.35 16 26 H 0.03 1.61 6.34 -2.39 -0.02 1.59 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.26 16.01 6.04 -92.71 -0.56 15.45 16 29 H 0.34 13.57 5.81 -89.69 -0.52 13.05 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 0.68 7.97 -2.39 -0.02 0.66 16 35 H 0.05 1.24 7.69 -2.38 -0.02 1.22 16 36 H 0.10 2.06 7.86 -2.39 -0.02 2.04 16 37 H 0.05 1.33 7.04 -2.39 -0.02 1.31 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.71 7.56 -2.39 -0.02 1.70 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -61.81 319.49 0.73 -61.08 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.65 Total: 24.44 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.96 Total: -32.14 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -6.93 Total: -106.06 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -61.81 0.73 -61.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.678 kcal (2) G-P(sol) polarization free energy of solvation -61.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds