Wall clock time and date at job start Mon Mar 30 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47389 * 2 1 4 4 H 1.09000 * 109.47494 * 180.46804 * 3 2 1 5 5 C 1.50701 * 109.47312 * 300.46740 * 3 2 1 6 6 H 1.08003 * 120.00288 * 116.39253 * 5 3 2 7 7 C 1.37875 * 119.99873 * 296.39096 * 5 3 2 8 8 N 1.31511 * 120.00137 * 353.02494 * 7 5 3 9 9 Si 1.86806 * 119.99714 * 173.02710 * 7 5 3 10 10 H 1.48500 * 109.46823 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47037 * 299.99493 * 9 7 5 12 12 H 1.48496 * 109.47196 * 59.99988 * 9 7 5 13 13 N 1.46901 * 109.46830 * 60.46720 * 3 2 1 14 14 C 1.46894 * 111.00123 * 85.42651 * 13 3 2 15 15 H 1.09004 * 110.28555 * 322.85244 * 14 13 3 16 16 C 1.54372 * 110.32991 * 84.98428 * 14 13 3 17 17 N 1.48561 * 104.59762 * 142.74863 * 16 14 13 18 18 C 1.46902 * 110.99902 * 200.95923 * 17 16 14 19 19 C 1.48560 * 104.22134 * 320.51579 * 17 16 14 20 20 C 1.54267 * 110.32228 * 200.62338 * 14 13 3 21 21 C 1.52999 * 110.32670 * 359.97438 * 20 14 13 22 22 C 1.53000 * 110.32438 * 122.20470 * 20 14 13 23 23 H 1.08995 * 109.47213 * 185.31106 * 1 2 3 24 24 H 1.09003 * 109.46718 * 305.30917 * 1 2 3 25 25 H 1.09001 * 109.47094 * 65.30549 * 1 2 3 26 26 H 1.09002 * 109.46790 * 240.00440 * 2 1 3 27 27 H 1.09000 * 109.47538 * 120.00748 * 2 1 3 28 28 H 0.96995 * 120.00159 * 355.44587 * 8 7 5 29 29 H 1.00912 * 110.99958 * 209.37705 * 13 3 2 30 30 H 1.09005 * 110.41296 * 261.53150 * 16 14 13 31 31 H 1.09005 * 110.41007 * 23.85271 * 16 14 13 32 32 H 1.09000 * 109.46870 * 59.87698 * 18 17 16 33 33 H 1.09000 * 109.47143 * 179.87117 * 18 17 16 34 34 H 1.09000 * 109.47297 * 299.87658 * 18 17 16 35 35 H 1.08996 * 110.40820 * 158.26059 * 19 17 16 36 36 H 1.08996 * 110.41586 * 280.70489 * 19 17 16 37 37 H 1.08995 * 109.46841 * 59.99700 * 21 20 14 38 38 H 1.08987 * 109.47200 * 180.02562 * 21 20 14 39 39 H 1.09004 * 109.46794 * 300.00223 * 21 20 14 40 40 H 1.09005 * 109.47110 * 60.00136 * 22 20 14 41 41 H 1.09001 * 109.47181 * 179.97438 * 22 20 14 42 42 H 1.08997 * 109.47174 * 300.00049 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4425 -0.0084 5 6 1.5284 2.1563 -1.2246 6 1 0.8611 2.9989 -1.1192 7 6 1.9121 1.7336 -2.4796 8 7 2.8286 0.7991 -2.6071 9 14 1.1300 2.4884 -3.9990 10 1 1.7107 1.8657 -5.2157 11 1 -0.3353 2.2490 -3.9723 12 1 1.3927 3.9498 -4.0167 13 7 1.5596 2.1316 1.2051 14 6 2.4575 1.8909 2.3425 15 1 2.8361 0.8690 2.3154 16 6 3.6281 2.8971 2.3240 17 7 3.8699 3.2164 3.7546 18 6 4.5854 4.4917 3.8956 19 6 2.5092 3.3013 4.3446 20 6 1.7213 2.1568 3.6718 21 6 0.2792 2.5913 3.4030 22 6 1.7457 0.9057 4.5522 23 1 -0.3633 -1.0232 0.0951 24 1 -0.3633 0.5940 0.8387 25 1 -0.3633 0.4293 -0.9337 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2819 0.4541 -1.8221 29 1 1.4475 3.1201 1.0359 30 1 4.5139 2.4417 1.8811 31 1 3.3484 3.7957 1.7741 32 1 3.9926 5.2918 3.4524 33 1 4.7474 4.7024 4.9527 34 1 5.5470 4.4270 3.3864 35 1 2.5525 3.1502 5.4232 36 1 2.0536 4.2640 4.1127 37 1 -0.2422 1.8037 2.8591 38 1 -0.2272 2.7757 4.3503 39 1 0.2799 3.5046 2.8080 40 1 2.7789 0.6322 4.7664 41 1 1.2228 1.1089 5.4868 42 1 1.2531 0.0849 4.0309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722292890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:37 Heat of formation + Delta-G solvation = -6.278586 kcal Electronic energy + Delta-G solvation = -18851.445327 eV Core-core repulsion = 16251.784904 eV Total energy + Delta-G solvation = -2599.660423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57049 -36.04451 -34.05455 -32.22372 -30.67065 -28.09506 -26.97636 -26.65909 -25.15246 -23.45891 -23.03432 -21.06342 -19.30928 -18.43752 -17.01948 -15.47434 -15.29740 -14.49738 -14.14649 -13.82455 -13.71902 -13.29852 -13.17865 -13.02111 -12.96697 -12.44162 -12.13625 -11.89718 -11.53334 -11.37492 -11.19882 -11.10078 -10.98668 -10.80342 -10.47357 -10.37367 -10.24453 -10.11081 -10.05274 -9.78278 -9.61448 -8.49867 -8.38336 -8.32958 -7.32860 -6.34475 -4.05940 3.42201 3.44786 3.62700 4.19306 4.51786 4.79312 4.91926 5.10865 5.29166 5.37206 5.46909 5.51462 5.60683 5.65345 5.75178 5.76489 5.85606 5.95836 6.01969 6.13778 6.22334 6.29509 6.33070 6.37272 6.46182 6.48697 6.61745 6.63866 6.79730 6.94761 7.04183 7.12775 7.15798 7.30447 7.52221 7.56895 7.90181 8.12123 8.51883 8.59008 8.87482 9.64250 11.01796 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.007288 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.453287 B = 3840.771550 C = 4299.691498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C 0.205 3.795 4 H -0.009 1.009 5 C -0.593 4.593 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.062 2.938 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.664 5.664 14 C 0.094 3.906 15 H 0.080 0.920 16 C 0.006 3.994 17 N -0.515 5.515 18 C 0.015 3.985 19 C 0.039 3.961 20 C -0.062 4.062 21 C -0.115 4.115 22 C -0.129 4.129 23 H 0.015 0.985 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.018 0.982 28 H 0.271 0.729 29 H 0.332 0.668 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 3.950 12.312 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.145 4.145 3 C 0.097 3.903 4 H 0.009 0.991 5 C -0.632 4.632 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.546 5.546 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.294 5.294 14 C -0.018 4.018 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.238 5.238 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.063 4.063 21 C -0.173 4.173 22 C -0.186 4.186 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.159 2.952 11.063 11.509 hybrid contribution 0.504 1.397 1.003 1.792 sum -0.655 4.349 12.066 12.842 Atomic orbital electron populations 1.21417 0.96594 0.97474 1.02085 1.21484 0.96232 0.98349 0.98388 1.19216 0.92475 0.91465 0.87189 0.99103 1.21945 1.31971 1.17434 0.91828 0.93047 1.25648 0.95812 0.95650 1.00919 1.70780 1.22934 1.26845 1.34031 0.83644 0.75885 0.75456 0.75933 1.20891 1.21401 1.21686 1.60777 1.47477 1.15617 1.05543 1.22356 0.89676 0.98256 0.91485 0.90144 1.23963 1.00645 0.99118 0.88637 1.65322 1.16035 1.29660 1.12828 1.22483 0.99011 0.90350 1.01605 1.23281 0.88707 0.97560 0.99331 1.21321 0.95690 0.94567 0.94705 1.21549 0.94389 1.02063 0.99319 1.21766 1.01506 0.96981 0.98391 0.96592 0.92876 0.92689 0.92221 0.96340 0.91786 0.84939 0.90680 0.93739 0.95603 0.91683 0.91573 0.90725 0.94103 0.90978 0.94596 0.93107 0.92576 0.93332 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.48 37.16 0.35 -2.22 16 2 C -0.11 -2.47 5.46 -26.73 -0.15 -2.61 16 3 C 0.20 4.88 1.79 -68.87 -0.12 4.75 16 4 H -0.01 -0.23 7.09 -51.93 -0.37 -0.59 16 5 C -0.59 -15.73 7.34 -34.44 -0.25 -15.99 16 6 H 0.05 1.37 7.66 -52.48 -0.40 0.97 16 7 C 0.02 0.67 5.23 -17.82 -0.09 0.58 16 8 N -0.91 -26.59 12.83 55.43 0.71 -25.88 16 9 Si 1.06 24.74 29.91 -169.99 -5.08 19.66 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.66 -13.19 3.57 -99.51 -0.36 -13.55 16 14 C 0.09 1.65 2.78 -66.33 -0.18 1.47 16 15 H 0.08 1.54 6.79 -51.93 -0.35 1.19 16 16 C 0.01 0.10 5.91 -2.19 -0.01 0.09 16 17 N -0.51 -7.63 5.66 -238.23 -1.35 -8.98 16 18 C 0.01 0.18 9.53 60.07 0.57 0.76 16 19 C 0.04 0.54 5.58 -2.18 -0.01 0.53 16 20 C -0.06 -0.90 1.03 -153.12 -0.16 -1.06 16 21 C -0.12 -1.67 7.45 37.16 0.28 -1.39 16 22 C -0.13 -1.74 8.24 37.16 0.31 -1.43 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.05 1.10 7.30 -51.93 -0.38 0.72 16 25 H 0.05 1.30 7.40 -51.93 -0.38 0.91 16 26 H 0.06 1.54 6.19 -51.93 -0.32 1.22 16 27 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 28 H 0.27 7.92 6.07 -40.82 -0.25 7.67 16 29 H 0.33 6.75 7.08 -39.29 -0.28 6.47 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.79 7.45 -51.93 -0.39 0.40 16 32 H 0.03 0.32 7.98 -51.93 -0.41 -0.09 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.93 7.86 -51.93 -0.41 0.53 16 36 H 0.04 0.56 7.59 -51.93 -0.39 0.16 16 37 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 38 H 0.03 0.45 8.14 -51.94 -0.42 0.03 16 39 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -27.43 317.22 -8.46 -35.88 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.68 Total: 4.62 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 0.52 Total: -16.53 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.99 Total: -48.41 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.43 -8.46 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.605 kcal (2) G-P(sol) polarization free energy of solvation -27.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds