Wall clock time and date at job start Mon Mar 30 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47389 * 2 1 4 4 H 1.09000 * 109.47494 * 180.46804 * 3 2 1 5 5 C 1.50701 * 109.47312 * 300.46740 * 3 2 1 6 6 H 1.08003 * 120.00288 * 116.39253 * 5 3 2 7 7 C 1.37875 * 119.99873 * 296.39096 * 5 3 2 8 8 N 1.31511 * 120.00137 * 353.02494 * 7 5 3 9 9 Si 1.86806 * 119.99714 * 173.02710 * 7 5 3 10 10 H 1.48500 * 109.46823 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47037 * 299.99493 * 9 7 5 12 12 H 1.48496 * 109.47196 * 59.99988 * 9 7 5 13 13 N 1.46901 * 109.46830 * 60.46720 * 3 2 1 14 14 C 1.46894 * 111.00123 * 85.42651 * 13 3 2 15 15 H 1.09004 * 110.28555 * 322.85244 * 14 13 3 16 16 C 1.54372 * 110.32991 * 84.98428 * 14 13 3 17 17 N 1.48561 * 104.59762 * 142.74863 * 16 14 13 18 18 C 1.46902 * 110.99902 * 200.95923 * 17 16 14 19 19 C 1.48560 * 104.22134 * 320.51579 * 17 16 14 20 20 C 1.54267 * 110.32228 * 200.62338 * 14 13 3 21 21 C 1.52999 * 110.32670 * 359.97438 * 20 14 13 22 22 C 1.53000 * 110.32438 * 122.20470 * 20 14 13 23 23 H 1.08995 * 109.47213 * 185.31106 * 1 2 3 24 24 H 1.09003 * 109.46718 * 305.30917 * 1 2 3 25 25 H 1.09001 * 109.47094 * 65.30549 * 1 2 3 26 26 H 1.09002 * 109.46790 * 240.00440 * 2 1 3 27 27 H 1.09000 * 109.47538 * 120.00748 * 2 1 3 28 28 H 0.96995 * 120.00159 * 355.44587 * 8 7 5 29 29 H 1.00912 * 110.99958 * 209.37705 * 13 3 2 30 30 H 1.09005 * 110.41296 * 261.53150 * 16 14 13 31 31 H 1.09005 * 110.41007 * 23.85271 * 16 14 13 32 32 H 1.09000 * 109.46870 * 59.87698 * 18 17 16 33 33 H 1.09000 * 109.47143 * 179.87117 * 18 17 16 34 34 H 1.09000 * 109.47297 * 299.87658 * 18 17 16 35 35 H 1.08996 * 110.40820 * 158.26059 * 19 17 16 36 36 H 1.08996 * 110.41586 * 280.70489 * 19 17 16 37 37 H 1.08995 * 109.46841 * 59.99700 * 21 20 14 38 38 H 1.08987 * 109.47200 * 180.02562 * 21 20 14 39 39 H 1.09004 * 109.46794 * 300.00223 * 21 20 14 40 40 H 1.09005 * 109.47110 * 60.00136 * 22 20 14 41 41 H 1.09001 * 109.47181 * 179.97438 * 22 20 14 42 42 H 1.08997 * 109.47174 * 300.00049 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4425 -0.0084 5 6 1.5284 2.1563 -1.2246 6 1 0.8611 2.9989 -1.1192 7 6 1.9121 1.7336 -2.4796 8 7 2.8286 0.7991 -2.6071 9 14 1.1300 2.4884 -3.9990 10 1 1.7107 1.8657 -5.2157 11 1 -0.3353 2.2490 -3.9723 12 1 1.3927 3.9498 -4.0167 13 7 1.5596 2.1316 1.2051 14 6 2.4575 1.8909 2.3425 15 1 2.8361 0.8690 2.3154 16 6 3.6281 2.8971 2.3240 17 7 3.8699 3.2164 3.7546 18 6 4.5854 4.4917 3.8956 19 6 2.5092 3.3013 4.3446 20 6 1.7213 2.1568 3.6718 21 6 0.2792 2.5913 3.4030 22 6 1.7457 0.9057 4.5522 23 1 -0.3633 -1.0232 0.0951 24 1 -0.3633 0.5940 0.8387 25 1 -0.3633 0.4293 -0.9337 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2819 0.4541 -1.8221 29 1 1.4475 3.1201 1.0359 30 1 4.5139 2.4417 1.8811 31 1 3.3484 3.7957 1.7741 32 1 3.9926 5.2918 3.4524 33 1 4.7474 4.7024 4.9527 34 1 5.5470 4.4270 3.3864 35 1 2.5525 3.1502 5.4232 36 1 2.0536 4.2640 4.1127 37 1 -0.2422 1.8037 2.8591 38 1 -0.2272 2.7757 4.3503 39 1 0.2799 3.5046 2.8080 40 1 2.7789 0.6322 4.7664 41 1 1.2228 1.1089 5.4868 42 1 1.2531 0.0849 4.0309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722292890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:37 Heat of formation + Delta-G solvation = -23.432724 kcal Electronic energy + Delta-G solvation = -18852.189186 eV Core-core repulsion = 16251.784904 eV Total energy + Delta-G solvation = -2600.404283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88352 -37.82430 -35.34507 -34.00508 -32.47438 -29.52712 -28.20362 -27.87326 -26.89535 -25.37376 -24.37614 -22.40206 -21.13242 -19.81616 -18.90382 -16.84779 -16.64122 -16.07612 -15.65086 -15.50318 -15.24343 -14.97033 -14.62439 -14.48611 -14.11088 -13.83020 -13.65354 -13.31988 -13.16551 -12.68117 -12.65587 -12.62056 -12.40206 -12.34823 -11.98640 -11.97200 -11.89959 -11.63295 -11.57192 -11.49114 -11.20035 -10.54430 -10.38848 -9.58700 -9.02967 -8.54507 -6.25992 1.53502 1.60235 1.78813 2.58005 2.99033 3.23750 3.52920 3.57168 3.82648 4.04088 4.19760 4.29459 4.42840 4.44372 4.48402 4.52025 4.58806 4.67367 4.75070 4.82473 4.85475 4.88747 4.91943 4.95455 5.09025 5.12885 5.18005 5.22676 5.31393 5.42710 5.47133 5.56021 5.59879 5.75904 5.77611 5.94890 6.01737 6.13692 6.52842 6.63877 6.85220 7.52627 8.81677 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.007288 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.453287 B = 3840.771550 C = 4299.691498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.212 3.788 4 H -0.043 1.043 5 C -0.595 4.595 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.935 5.935 9 Si 1.106 2.894 10 H -0.289 1.289 11 H -0.272 1.272 12 H -0.274 1.274 13 N -0.652 5.652 14 C 0.092 3.908 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.520 5.520 18 C 0.013 3.987 19 C 0.044 3.956 20 C -0.057 4.057 21 C -0.110 4.110 22 C -0.124 4.124 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 4.961 14.066 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.103 3.897 4 H -0.026 1.026 5 C -0.633 4.633 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.929 3.071 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.199 1.199 13 N -0.281 5.281 14 C -0.020 4.020 15 H 0.078 0.922 16 C -0.117 4.117 17 N -0.244 5.244 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.059 4.059 21 C -0.168 4.168 22 C -0.182 4.182 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.340 3.974 12.855 13.657 hybrid contribution 0.914 1.091 0.538 1.522 sum -1.426 5.066 13.393 14.389 Atomic orbital electron populations 1.21296 0.94946 0.98927 1.01247 1.21368 0.97529 0.97580 0.97426 1.18998 0.90304 0.92183 0.88225 1.02587 1.22226 1.31114 1.17152 0.92830 0.93267 1.26934 0.95671 0.95510 1.04159 1.70892 1.24481 1.28549 1.33400 0.83073 0.75856 0.75563 0.72634 1.21474 1.19788 1.19928 1.60748 1.47779 1.15049 1.04528 1.22396 0.90101 0.97302 0.92180 0.92168 1.23742 0.99443 0.98254 0.90272 1.65324 1.16999 1.31303 1.10767 1.22558 0.98626 0.89158 1.03171 1.23316 0.87648 0.97155 1.00270 1.21320 0.95711 0.95839 0.92983 1.21481 0.94025 1.00930 1.00326 1.21725 1.01541 0.95855 0.99046 0.94359 0.91854 0.94847 0.95160 0.95248 0.93189 0.85172 0.92700 0.94849 0.95468 0.89324 0.91683 0.88503 0.93607 0.92719 0.91964 0.93923 0.92970 0.90783 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.48 71.98 0.68 -3.90 16 2 C -0.10 -4.76 5.46 30.59 0.17 -4.60 16 3 C 0.21 10.38 1.79 44.17 0.08 10.46 16 4 H -0.04 -2.40 7.09 -2.39 -0.02 -2.42 16 5 C -0.59 -32.01 7.34 25.60 0.19 -31.82 16 6 H 0.05 2.63 7.66 -2.91 -0.02 2.61 16 7 C -0.02 -1.33 5.23 84.65 0.44 -0.88 16 8 N -0.94 -56.29 12.83 21.45 0.28 -56.01 16 9 Si 1.11 49.84 29.91 68.60 2.05 51.90 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.65 -26.06 3.57 -468.74 -1.67 -27.74 16 14 C 0.09 3.22 2.78 45.81 0.13 3.34 16 15 H 0.06 2.36 6.79 -2.38 -0.02 2.34 16 16 C 0.01 0.45 5.91 86.45 0.51 0.96 16 17 N -0.52 -14.61 5.66 -907.63 -5.14 -19.74 16 18 C 0.01 0.31 9.53 127.69 1.22 1.53 16 19 C 0.04 1.07 5.58 86.45 0.48 1.56 16 20 C -0.06 -1.57 1.03 -51.28 -0.05 -1.63 16 21 C -0.11 -2.92 7.45 71.98 0.54 -2.38 16 22 C -0.12 -3.05 8.24 71.98 0.59 -2.46 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 2.56 7.30 -2.39 -0.02 2.54 16 25 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 26 H 0.03 1.60 6.19 -2.39 -0.01 1.59 16 27 H 0.03 1.30 7.46 -2.39 -0.02 1.28 16 28 H 0.26 15.79 6.07 -92.71 -0.56 15.23 16 29 H 0.33 13.45 7.08 -89.68 -0.64 12.82 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.03 1.20 7.45 -2.38 -0.02 1.18 16 32 H 0.03 0.62 7.98 -2.39 -0.02 0.60 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.10 2.01 7.86 -2.39 -0.02 1.99 16 36 H 0.05 1.10 7.59 -2.39 -0.02 1.08 16 37 H 0.05 1.65 7.68 -2.39 -0.02 1.63 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.19 7.38 -2.38 -0.02 1.17 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -59.61 317.22 1.02 -58.59 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.53 Total: 22.83 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 4.97 Total: -29.82 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -6.54 Total: -103.49 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.90 kcal Total: -59.61 1.02 -58.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.156 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds