Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47297 * 54.10509 * 3 2 1 5 5 C 1.50706 * 109.46992 * 174.10311 * 3 2 1 6 6 H 1.08000 * 119.99997 * 116.20269 * 5 3 2 7 7 C 1.37873 * 120.00094 * 296.20323 * 5 3 2 8 8 N 1.31513 * 119.99856 * 353.21470 * 7 5 3 9 9 Si 1.86804 * 119.99856 * 173.21673 * 7 5 3 10 10 H 1.48497 * 109.47119 * 269.99533 * 9 7 5 11 11 H 1.48501 * 109.46735 * 149.99930 * 9 7 5 12 12 H 1.48493 * 109.47363 * 30.00115 * 9 7 5 13 13 N 1.46899 * 109.47275 * 294.10341 * 3 2 1 14 14 C 1.46901 * 111.00187 * 155.95193 * 13 3 2 15 15 H 1.08999 * 110.28890 * 36.23396 * 14 13 3 16 16 C 1.54385 * 110.32054 * 274.10764 * 14 13 3 17 17 N 1.48559 * 104.59349 * 217.24852 * 16 14 13 18 18 C 1.46901 * 110.99825 * 159.04067 * 17 16 14 19 19 C 1.48559 * 104.21890 * 39.48491 * 17 16 14 20 20 C 1.54254 * 110.32701 * 158.47345 * 14 13 3 21 21 C 1.52998 * 110.32401 * 237.79042 * 20 14 13 22 22 C 1.53004 * 110.32192 * 359.97438 * 20 14 13 23 23 H 1.08997 * 109.47359 * 306.25695 * 1 2 3 24 24 H 1.09000 * 109.47032 * 66.25601 * 1 2 3 25 25 H 1.09002 * 109.46850 * 186.25242 * 1 2 3 26 26 H 1.09002 * 109.47334 * 240.00445 * 2 1 3 27 27 H 1.08999 * 109.47267 * 119.99850 * 2 1 3 28 28 H 0.97000 * 120.00310 * 355.42102 * 8 7 5 29 29 H 1.00898 * 110.99739 * 31.99213 * 13 3 2 30 30 H 1.08996 * 110.41117 * 336.03157 * 16 14 13 31 31 H 1.09004 * 110.41078 * 98.46958 * 16 14 13 32 32 H 1.08998 * 109.47137 * 59.87314 * 18 17 16 33 33 H 1.08997 * 109.46931 * 179.87662 * 18 17 16 34 34 H 1.09001 * 109.46810 * 299.87645 * 18 17 16 35 35 H 1.08999 * 110.41049 * 79.29541 * 19 17 16 36 36 H 1.09001 * 110.40670 * 201.61853 * 19 17 16 37 37 H 1.09003 * 109.47138 * 60.00070 * 21 20 14 38 38 H 1.08997 * 109.47478 * 179.97438 * 21 20 14 39 39 H 1.09002 * 109.47158 * 300.00037 * 21 20 14 40 40 H 1.09007 * 109.46869 * 60.00682 * 22 20 14 41 41 H 1.09004 * 109.46825 * 179.97438 * 22 20 14 42 42 H 1.08992 * 109.47751 * 300.00371 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5930 1.9859 0.8325 5 6 3.5399 1.4450 0.1460 6 1 4.1593 1.8300 -0.6506 7 6 4.1214 0.9560 1.2964 8 7 3.3688 0.6116 2.3185 9 14 5.9783 0.7825 1.4035 10 1 6.3779 -0.5653 0.9252 11 1 6.4111 0.9559 2.8134 12 1 6.6219 1.8191 0.5571 13 7 1.6699 2.0928 -1.2642 14 6 1.6106 3.5522 -1.1080 15 1 2.3890 3.8911 -0.4244 16 6 0.2200 3.9801 -0.5917 17 7 -0.0656 5.2552 -1.2984 18 6 -1.5071 5.5378 -1.3125 19 6 0.4467 5.0321 -2.6750 20 6 1.7596 4.2443 -2.4785 21 6 2.9552 5.1990 -2.4645 22 6 1.9247 3.2011 -3.5855 23 1 -0.3634 0.6077 0.8286 24 1 -0.3633 0.4138 -0.9407 25 1 -0.3633 -1.0216 0.1119 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4112 0.7634 2.2886 29 1 0.7957 1.7307 -1.6146 30 1 -0.5276 3.2288 -0.8458 31 1 0.2476 4.1408 0.4861 32 1 -1.8724 5.6142 -0.2885 33 1 -1.6880 6.4776 -1.8340 34 1 -2.0305 4.7309 -1.8256 35 1 -0.2655 4.4454 -3.2552 36 1 0.6429 5.9850 -3.1665 37 1 3.8649 4.6389 -2.2481 38 1 3.0478 5.6796 -3.4384 39 1 2.8048 5.9583 -1.6971 40 1 1.0484 2.5532 -3.6077 41 1 2.0282 3.7046 -4.5467 42 1 2.8144 2.6023 -3.3908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722292891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -5.704721 kcal Electronic energy + Delta-G solvation = -18862.172107 eV Core-core repulsion = 16262.536568 eV Total energy + Delta-G solvation = -2599.635539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52477 -36.10299 -34.02278 -32.19246 -31.00622 -28.11056 -26.92968 -26.63007 -25.38336 -23.37538 -22.62197 -20.97824 -19.83324 -18.37643 -16.67948 -15.65471 -15.30124 -14.79706 -14.23306 -13.89458 -13.69568 -13.33671 -13.17684 -12.90039 -12.67553 -12.35368 -12.22240 -12.09610 -11.61978 -11.47272 -11.23459 -11.11370 -10.95321 -10.69361 -10.52894 -10.39885 -10.32684 -10.10850 -10.05725 -9.89845 -9.62771 -8.63388 -8.37601 -8.30480 -7.24501 -6.25438 -3.96805 3.48190 3.50688 3.66910 4.20058 4.57977 4.86070 4.97299 5.14342 5.31101 5.40675 5.44832 5.51459 5.66688 5.70736 5.79390 5.82316 5.84418 5.90521 5.95547 5.98775 6.11237 6.15124 6.17087 6.36837 6.40950 6.50151 6.59839 6.60898 6.72282 6.82040 6.87227 6.94435 7.03223 7.16497 7.23574 7.42702 8.07999 8.16936 8.49986 8.72755 8.98078 9.72563 11.08895 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.007936 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.433890 B = 3527.227507 C = 4028.559711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.208 3.792 4 H -0.008 1.008 5 C -0.572 4.572 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.665 5.665 14 C 0.103 3.897 15 H 0.094 0.906 16 C 0.005 3.995 17 N -0.513 5.513 18 C 0.015 3.985 19 C 0.039 3.961 20 C -0.061 4.061 21 C -0.129 4.129 22 C -0.114 4.114 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.269 0.731 29 H 0.314 0.686 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 6.590 -8.759 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.100 3.900 4 H 0.010 0.990 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.294 5.294 14 C -0.009 4.009 15 H 0.112 0.888 16 C -0.125 4.125 17 N -0.237 5.237 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.062 4.062 21 C -0.187 4.187 22 C -0.172 4.172 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.736 6.508 -7.749 11.172 hybrid contribution -2.737 -0.063 -0.781 2.847 sum -7.472 6.444 -8.530 13.043 Atomic orbital electron populations 1.21888 0.99075 1.00086 0.99860 1.21827 0.91811 1.00758 1.02330 1.19293 0.96381 0.89215 0.85127 0.99030 1.21984 0.90839 1.44389 1.03914 0.92605 1.25720 1.06590 0.94083 0.92313 1.70767 1.07611 1.45496 1.31614 0.83570 0.74805 0.76377 0.75619 1.21601 1.21370 1.21554 1.60804 1.35016 1.01838 1.31768 1.22278 0.94511 0.89240 0.94853 0.88791 1.23999 0.98694 0.90032 0.99757 1.65302 1.13897 1.32102 1.12374 1.22485 0.88802 1.00347 1.01784 1.23293 0.96107 0.99434 0.90047 1.21314 0.93801 0.94899 0.96230 1.21762 0.97614 0.98629 1.00662 1.21535 1.03045 0.97554 0.95064 0.93851 0.94221 0.94014 0.92947 0.90784 0.91998 0.86768 0.94447 0.90602 0.91623 0.91627 0.95794 0.94312 0.90683 0.92115 0.93542 0.92553 0.93546 0.94675 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.63 37.16 0.36 -2.44 16 2 C -0.13 -2.90 5.20 -26.73 -0.14 -3.04 16 3 C 0.21 4.96 1.52 -68.86 -0.10 4.86 16 4 H -0.01 -0.20 7.13 -51.93 -0.37 -0.57 16 5 C -0.57 -15.64 8.41 -34.44 -0.29 -15.93 16 6 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 7 C 0.02 0.45 5.19 -17.82 -0.09 0.36 16 8 N -0.92 -27.02 12.77 55.43 0.71 -26.31 16 9 Si 1.07 25.30 29.91 -169.99 -5.08 20.22 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.66 -13.44 4.38 -99.50 -0.44 -13.87 16 14 C 0.10 1.93 2.78 -66.33 -0.18 1.74 16 15 H 0.09 2.07 7.25 -51.93 -0.38 1.70 16 16 C 0.01 0.09 5.95 -2.18 -0.01 0.07 16 17 N -0.51 -7.76 5.66 -238.23 -1.35 -9.11 16 18 C 0.01 0.19 9.53 60.07 0.57 0.76 16 19 C 0.04 0.55 5.58 -2.19 -0.01 0.54 16 20 C -0.06 -0.97 1.03 -153.13 -0.16 -1.12 16 21 C -0.13 -1.96 8.24 37.16 0.31 -1.65 16 22 C -0.11 -1.74 7.45 37.16 0.28 -1.47 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.66 6.68 -51.93 -0.35 0.31 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.88 6.16 -51.93 -0.32 1.56 16 28 H 0.27 7.87 6.16 -40.82 -0.25 7.62 16 29 H 0.31 5.91 5.50 -39.29 -0.22 5.69 16 30 H 0.04 0.63 7.43 -51.93 -0.39 0.24 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.29 7.97 -51.93 -0.41 -0.13 16 35 H 0.04 0.53 7.59 -51.93 -0.39 0.14 16 36 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.70 7.41 -51.93 -0.38 0.31 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -28.19 318.79 -8.55 -36.74 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.71 Total: 4.85 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 0.52 Total: -17.31 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.08 Total: -49.30 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.19 -8.55 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.036 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds