Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47297 * 54.10509 * 3 2 1 5 5 C 1.50706 * 109.46992 * 174.10311 * 3 2 1 6 6 H 1.08000 * 119.99997 * 116.20269 * 5 3 2 7 7 C 1.37873 * 120.00094 * 296.20323 * 5 3 2 8 8 N 1.31513 * 119.99856 * 353.21470 * 7 5 3 9 9 Si 1.86804 * 119.99856 * 173.21673 * 7 5 3 10 10 H 1.48497 * 109.47119 * 269.99533 * 9 7 5 11 11 H 1.48501 * 109.46735 * 149.99930 * 9 7 5 12 12 H 1.48493 * 109.47363 * 30.00115 * 9 7 5 13 13 N 1.46899 * 109.47275 * 294.10341 * 3 2 1 14 14 C 1.46901 * 111.00187 * 155.95193 * 13 3 2 15 15 H 1.08999 * 110.28890 * 36.23396 * 14 13 3 16 16 C 1.54385 * 110.32054 * 274.10764 * 14 13 3 17 17 N 1.48559 * 104.59349 * 217.24852 * 16 14 13 18 18 C 1.46901 * 110.99825 * 159.04067 * 17 16 14 19 19 C 1.48559 * 104.21890 * 39.48491 * 17 16 14 20 20 C 1.54254 * 110.32701 * 158.47345 * 14 13 3 21 21 C 1.52998 * 110.32401 * 237.79042 * 20 14 13 22 22 C 1.53004 * 110.32192 * 359.97438 * 20 14 13 23 23 H 1.08997 * 109.47359 * 306.25695 * 1 2 3 24 24 H 1.09000 * 109.47032 * 66.25601 * 1 2 3 25 25 H 1.09002 * 109.46850 * 186.25242 * 1 2 3 26 26 H 1.09002 * 109.47334 * 240.00445 * 2 1 3 27 27 H 1.08999 * 109.47267 * 119.99850 * 2 1 3 28 28 H 0.97000 * 120.00310 * 355.42102 * 8 7 5 29 29 H 1.00898 * 110.99739 * 31.99213 * 13 3 2 30 30 H 1.08996 * 110.41117 * 336.03157 * 16 14 13 31 31 H 1.09004 * 110.41078 * 98.46958 * 16 14 13 32 32 H 1.08998 * 109.47137 * 59.87314 * 18 17 16 33 33 H 1.08997 * 109.46931 * 179.87662 * 18 17 16 34 34 H 1.09001 * 109.46810 * 299.87645 * 18 17 16 35 35 H 1.08999 * 110.41049 * 79.29541 * 19 17 16 36 36 H 1.09001 * 110.40670 * 201.61853 * 19 17 16 37 37 H 1.09003 * 109.47138 * 60.00070 * 21 20 14 38 38 H 1.08997 * 109.47478 * 179.97438 * 21 20 14 39 39 H 1.09002 * 109.47158 * 300.00037 * 21 20 14 40 40 H 1.09007 * 109.46869 * 60.00682 * 22 20 14 41 41 H 1.09004 * 109.46825 * 179.97438 * 22 20 14 42 42 H 1.08992 * 109.47751 * 300.00371 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5930 1.9859 0.8325 5 6 3.5399 1.4450 0.1460 6 1 4.1593 1.8300 -0.6506 7 6 4.1214 0.9560 1.2964 8 7 3.3688 0.6116 2.3185 9 14 5.9783 0.7825 1.4035 10 1 6.3779 -0.5653 0.9252 11 1 6.4111 0.9559 2.8134 12 1 6.6219 1.8191 0.5571 13 7 1.6699 2.0928 -1.2642 14 6 1.6106 3.5522 -1.1080 15 1 2.3890 3.8911 -0.4244 16 6 0.2200 3.9801 -0.5917 17 7 -0.0656 5.2552 -1.2984 18 6 -1.5071 5.5378 -1.3125 19 6 0.4467 5.0321 -2.6750 20 6 1.7596 4.2443 -2.4785 21 6 2.9552 5.1990 -2.4645 22 6 1.9247 3.2011 -3.5855 23 1 -0.3634 0.6077 0.8286 24 1 -0.3633 0.4138 -0.9407 25 1 -0.3633 -1.0216 0.1119 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4112 0.7634 2.2886 29 1 0.7957 1.7307 -1.6146 30 1 -0.5276 3.2288 -0.8458 31 1 0.2476 4.1408 0.4861 32 1 -1.8724 5.6142 -0.2885 33 1 -1.6880 6.4776 -1.8340 34 1 -2.0305 4.7309 -1.8256 35 1 -0.2655 4.4454 -3.2552 36 1 0.6429 5.9850 -3.1665 37 1 3.8649 4.6389 -2.2481 38 1 3.0478 5.6796 -3.4384 39 1 2.8048 5.9583 -1.6971 40 1 1.0484 2.5532 -3.6077 41 1 2.0282 3.7046 -4.5467 42 1 2.8144 2.6023 -3.3908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722292891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -24.077042 kcal Electronic energy + Delta-G solvation = -18862.968791 eV Core-core repulsion = 16262.536568 eV Total energy + Delta-G solvation = -2600.432222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87955 -37.85919 -35.32559 -34.12265 -32.64532 -29.53821 -28.32589 -27.84816 -27.08370 -25.08024 -24.13871 -22.29761 -21.71355 -19.71875 -18.75069 -17.11330 -16.71208 -16.31129 -15.67457 -15.57182 -15.19011 -14.74888 -14.70987 -14.12201 -14.09803 -13.90724 -13.87310 -13.37394 -13.21284 -12.86150 -12.67986 -12.57335 -12.40237 -12.34363 -12.26775 -11.96033 -11.95247 -11.69295 -11.61502 -11.46006 -11.15949 -10.62552 -10.43722 -9.54658 -9.01631 -8.48165 -6.21644 1.52933 1.60696 1.78384 2.59073 2.99454 3.23458 3.55075 3.58178 3.81983 4.07434 4.18113 4.30135 4.30880 4.36117 4.44498 4.46470 4.49849 4.53960 4.67367 4.79026 4.84093 4.87655 4.92716 4.94081 4.99832 5.05178 5.12982 5.13903 5.17660 5.29446 5.38263 5.46828 5.55921 5.61287 5.78903 6.05093 6.07828 6.21657 6.56363 6.63603 6.97295 7.54808 8.84254 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.007936 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.433890 B = 3527.227507 C = 4028.559711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.215 3.785 4 H -0.039 1.039 5 C -0.581 4.581 6 H 0.041 0.959 7 C -0.031 4.031 8 N -0.939 5.939 9 Si 1.109 2.891 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.659 5.659 14 C 0.100 3.900 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.524 5.524 18 C 0.014 3.986 19 C 0.047 3.953 20 C -0.060 4.060 21 C -0.125 4.125 22 C -0.107 4.107 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 7.309 -10.824 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.106 3.894 4 H -0.022 1.022 5 C -0.620 4.620 6 H 0.059 0.941 7 C -0.229 4.229 8 N -0.578 5.578 9 Si 0.933 3.067 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.290 5.290 14 C -0.011 4.011 15 H 0.068 0.932 16 C -0.115 4.115 17 N -0.248 5.248 18 C -0.134 4.134 19 C -0.081 4.081 20 C -0.061 4.061 21 C -0.183 4.183 22 C -0.165 4.165 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.800 7.237 -9.838 13.520 hybrid contribution -2.433 -0.225 -0.161 2.449 sum -8.233 7.012 -9.999 14.728 Atomic orbital electron populations 1.21756 0.95531 1.01592 1.00840 1.21643 0.94964 0.98956 1.00494 1.19050 0.94474 0.90152 0.85697 1.02163 1.22267 0.92772 1.43665 1.03286 0.94112 1.26979 1.10120 0.93693 0.92110 1.70872 1.07200 1.47249 1.32445 0.83014 0.70562 0.77315 0.75800 1.20109 1.21309 1.20245 1.60715 1.35799 1.02826 1.29617 1.22215 0.94335 0.88318 0.96273 0.93224 1.23739 0.97602 0.91415 0.98745 1.65286 1.16092 1.30520 1.12934 1.22563 0.86862 1.01624 1.02382 1.23279 0.94889 1.00258 0.89640 1.21328 0.95355 0.95152 0.94286 1.21721 0.96327 0.98154 1.02049 1.21454 1.01781 0.97233 0.96061 0.94365 0.92005 0.91916 0.93239 0.94020 0.93166 0.85505 0.93824 0.92779 0.91588 0.89521 0.94968 0.92979 0.88684 0.94459 0.90626 0.93167 0.93261 0.91905 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.63 71.98 0.69 -4.30 16 2 C -0.12 -5.58 5.20 30.59 0.16 -5.42 16 3 C 0.21 10.63 1.52 44.17 0.07 10.70 16 4 H -0.04 -2.16 7.13 -2.39 -0.02 -2.17 16 5 C -0.58 -32.90 8.41 25.60 0.22 -32.68 16 6 H 0.04 2.38 7.82 -2.91 -0.02 2.35 16 7 C -0.03 -1.80 5.19 84.65 0.44 -1.36 16 8 N -0.94 -57.13 12.77 21.45 0.27 -56.85 16 9 Si 1.11 51.76 29.91 68.60 2.05 53.81 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.66 -26.93 4.38 -468.72 -2.05 -28.98 16 14 C 0.10 3.80 2.78 45.81 0.13 3.93 16 15 H 0.05 2.31 7.25 -2.39 -0.02 2.30 16 16 C 0.02 0.51 5.95 86.45 0.51 1.03 16 17 N -0.52 -14.83 5.66 -907.64 -5.14 -19.97 16 18 C 0.01 0.31 9.53 127.69 1.22 1.53 16 19 C 0.05 1.18 5.58 86.45 0.48 1.66 16 20 C -0.06 -1.81 1.03 -51.29 -0.05 -1.86 16 21 C -0.13 -3.67 8.24 71.98 0.59 -3.07 16 22 C -0.11 -3.06 7.45 71.98 0.54 -2.53 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.92 6.68 -2.39 -0.02 1.91 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.04 2.17 6.16 -2.39 -0.01 2.15 16 28 H 0.26 15.82 6.16 -92.71 -0.57 15.25 16 29 H 0.33 11.92 5.50 -89.70 -0.49 11.43 16 30 H 0.04 1.41 7.43 -2.39 -0.02 1.39 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.03 0.66 7.97 -2.39 -0.02 0.64 16 35 H 0.05 1.20 7.59 -2.39 -0.02 1.18 16 36 H 0.09 2.07 7.86 -2.39 -0.02 2.05 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.36 7.41 -2.38 -0.02 1.34 16 41 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.05 1.59 7.84 -2.39 -0.02 1.57 16 Total: -1.00 -62.97 318.79 0.79 -62.18 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.66 Total: 22.18 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 4.99 Total: -32.37 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -6.92 Total: -105.80 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -62.97 0.79 -62.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722292891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.103 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds