Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.46805 * 2 1 4 4 H 1.08996 * 109.46816 * 303.58192 * 3 2 1 5 5 C 1.50699 * 109.46736 * 183.59075 * 3 2 1 6 6 H 1.08002 * 119.99737 * 245.13881 * 5 3 2 7 7 C 1.37880 * 120.00537 * 65.13599 * 5 3 2 8 8 N 1.31508 * 120.00004 * 187.18626 * 7 5 3 9 9 Si 1.86799 * 119.99639 * 7.18667 * 7 5 3 10 10 H 1.48503 * 109.47017 * 269.99767 * 9 7 5 11 11 H 1.48504 * 109.47014 * 150.00077 * 9 7 5 12 12 H 1.48499 * 109.47322 * 29.99573 * 9 7 5 13 13 N 1.46897 * 109.47093 * 63.58628 * 3 2 1 14 14 C 1.48532 * 110.99700 * 62.60472 * 13 3 2 15 15 C 1.54941 * 103.22508 * 159.71864 * 14 13 3 16 16 H 1.08999 * 110.87689 * 81.00960 * 15 14 13 17 17 C 1.53000 * 110.72340 * 204.22803 * 15 14 13 18 18 C 1.54598 * 102.92110 * 322.58268 * 15 14 13 19 19 H 1.08997 * 110.30754 * 263.04215 * 18 15 14 20 20 C 1.53001 * 110.30936 * 140.87279 * 18 15 14 21 21 C 1.53000 * 109.47265 * 177.82901 * 20 18 15 22 22 N 1.46893 * 109.47078 * 179.97438 * 21 20 18 23 23 C 1.47899 * 110.99736 * 179.97438 * 13 3 2 24 24 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46862 * 300.00200 * 1 2 3 26 26 H 1.09000 * 109.46686 * 60.00009 * 1 2 3 27 27 H 1.08998 * 109.46862 * 239.99800 * 2 1 3 28 28 H 1.08994 * 109.47008 * 119.99675 * 2 1 3 29 29 H 0.97003 * 120.00357 * 354.94663 * 8 7 5 30 30 H 1.08998 * 110.66656 * 278.15050 * 14 13 3 31 31 H 1.08998 * 110.66925 * 41.28231 * 14 13 3 32 32 H 1.09007 * 109.47256 * 173.50377 * 17 15 14 33 33 H 1.09001 * 109.46733 * 293.49427 * 17 15 14 34 34 H 1.08997 * 109.47209 * 53.49661 * 17 15 14 35 35 H 1.08998 * 109.47441 * 297.83330 * 20 18 15 36 36 H 1.09004 * 109.46911 * 57.83099 * 20 18 15 37 37 H 1.08998 * 109.47241 * 300.00551 * 21 20 18 38 38 H 1.09002 * 109.46482 * 60.00330 * 21 20 18 39 39 H 1.00907 * 111.00191 * 56.05378 * 22 21 20 40 40 H 1.00903 * 110.99953 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.92084 * 333.51182 * 23 13 3 42 42 H 1.09002 * 109.91984 * 94.80444 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6252 1.9745 -0.8561 5 6 3.5444 1.4435 -0.0890 6 1 4.1338 1.8193 0.7343 7 6 4.1684 0.9646 -1.2214 8 7 5.4767 0.8332 -1.2455 9 14 3.1554 0.5025 -2.7213 10 1 2.7646 -0.9274 -2.6333 11 1 3.9614 0.7207 -3.9493 12 1 1.9349 1.3469 -2.7737 13 7 1.6223 2.1096 1.2404 14 6 2.2209 1.4481 2.4279 15 6 2.1279 2.5380 3.5253 16 1 1.1294 2.5659 3.9614 17 6 3.1836 2.3073 4.6084 18 6 2.4205 3.8401 2.7448 19 1 3.4697 4.1162 2.8494 20 6 1.5201 4.9720 3.2439 21 6 1.8625 6.2629 2.4974 22 7 0.9976 7.3495 2.9760 23 6 2.0991 3.5092 1.2759 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 6.0090 1.1411 -0.4953 30 1 1.6432 0.5680 2.7101 31 1 3.2606 1.1822 2.2370 32 1 3.1775 3.1448 5.3061 33 1 2.9581 1.3857 5.1451 34 1 4.1673 2.2269 4.1458 35 1 0.4769 4.7133 3.0626 36 1 1.6779 5.1175 4.3125 37 1 2.9057 6.5217 2.6786 38 1 1.7046 6.1173 1.4287 39 1 1.0773 7.4615 3.9757 40 1 1.2041 8.2135 2.4976 41 1 2.9975 3.6111 0.6671 42 1 1.3199 4.1764 0.9073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723901130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = -18.954677 kcal Electronic energy + Delta-G solvation = -18603.540752 eV Core-core repulsion = 16003.330652 eV Total energy + Delta-G solvation = -2600.210100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.06448 -35.87447 -34.31761 -32.08042 -31.16406 -30.48445 -27.09569 -25.98055 -24.72219 -22.77533 -21.85825 -20.36484 -19.47610 -18.96110 -17.36824 -16.13969 -15.27238 -14.92299 -14.76513 -13.81725 -13.70625 -13.40600 -13.08068 -12.89156 -12.82121 -12.58346 -12.11248 -11.90803 -11.68373 -11.42418 -11.19782 -11.03575 -10.90245 -10.67940 -10.45702 -10.12717 -10.10199 -9.93719 -9.80926 -9.62613 -9.47503 -8.84464 -8.73816 -8.47172 -7.31066 -6.35537 -4.11119 3.37651 3.44297 3.59008 4.46743 4.50522 4.96583 5.00819 5.15262 5.26856 5.29807 5.44916 5.50576 5.65778 5.80876 5.92578 5.94307 6.02762 6.06196 6.11014 6.14881 6.20102 6.30974 6.38159 6.40856 6.53320 6.61072 6.68345 6.74145 6.79144 6.88123 6.94099 7.00631 7.07892 7.20059 7.28081 7.36082 7.89147 8.04867 8.17398 8.35533 8.90769 9.59107 10.93972 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.007366 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.992097 B = 3800.141109 C = 3959.837028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.170 3.830 4 H 0.037 0.963 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.030 3.970 8 N -0.913 5.913 9 Si 1.053 2.947 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.277 1.277 13 N -0.507 5.507 14 C 0.044 3.956 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.140 4.140 18 C -0.091 4.091 19 H 0.065 0.935 20 C -0.102 4.102 21 C 0.058 3.942 22 N -0.853 5.853 23 C 0.043 3.957 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.336 0.664 40 H 0.338 0.662 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 6.532 8.668 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.062 3.938 4 H 0.055 0.945 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.883 3.117 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.203 1.203 13 N -0.231 5.231 14 C -0.084 4.084 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.198 4.198 18 C -0.111 4.111 19 H 0.083 0.917 20 C -0.140 4.140 21 C -0.072 4.072 22 N -0.381 5.381 23 C -0.086 4.086 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.239 5.411 6.846 12.001 hybrid contribution 1.878 1.075 1.771 2.796 sum -6.361 6.486 8.617 12.521 Atomic orbital electron populations 1.21755 0.97611 0.99225 1.01588 1.21851 0.93685 0.99265 1.00792 1.19871 0.94615 0.90505 0.88845 0.94531 1.22599 0.91667 1.46932 1.04310 0.92138 1.25729 0.97101 0.93835 1.00800 1.70819 1.05602 1.43133 1.35160 0.83868 0.75152 0.76900 0.75773 1.21013 1.21851 1.20299 1.65012 1.53716 1.01197 1.03130 1.23160 0.99608 0.95772 0.89859 1.22115 0.98593 0.95172 0.95296 0.90889 1.21756 0.99107 1.00687 0.98216 1.22024 0.98650 0.94314 0.96070 0.91651 1.21573 1.00597 0.93360 0.98466 1.21899 0.93397 0.91353 1.00596 1.58741 1.60160 1.09452 1.09772 1.22822 0.99631 0.91579 0.94523 0.94860 0.92172 0.93937 0.93179 0.92848 0.92487 0.91930 0.92066 0.93333 0.92970 0.92753 0.90922 0.92942 0.95913 0.90530 0.85245 0.85013 0.92113 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.79 37.16 0.36 -2.32 16 2 C -0.12 -2.58 4.90 -26.72 -0.13 -2.71 16 3 C 0.17 4.00 1.41 -68.86 -0.10 3.90 16 4 H 0.04 0.91 6.61 -51.93 -0.34 0.57 16 5 C -0.62 -16.63 6.69 -34.44 -0.23 -16.86 16 6 H 0.06 1.76 6.26 -52.49 -0.33 1.43 16 7 C 0.03 0.86 5.42 -17.82 -0.10 0.76 16 8 N -0.91 -27.79 13.70 55.43 0.76 -27.03 16 9 Si 1.05 25.62 25.41 -169.99 -4.32 21.30 16 10 H -0.28 -6.60 6.74 56.52 0.38 -6.22 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.35 6.37 56.52 0.36 -5.99 16 13 N -0.51 -10.51 4.70 -223.90 -1.05 -11.56 16 14 C 0.04 0.85 4.73 -1.90 -0.01 0.85 16 15 C -0.09 -1.47 3.20 -88.76 -0.28 -1.76 16 16 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 17 C -0.14 -1.96 9.16 37.16 0.34 -1.62 16 18 C -0.09 -1.45 2.61 -89.28 -0.23 -1.69 16 19 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 20 C -0.10 -1.38 4.67 -26.73 -0.12 -1.50 16 21 C 0.06 0.74 6.61 -3.83 -0.03 0.71 16 22 N -0.85 -9.28 9.62 -10.37 -0.10 -9.38 16 23 C 0.04 0.83 5.55 -2.77 -0.02 0.81 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.15 4.47 -51.93 -0.23 0.92 16 28 H 0.05 1.17 6.83 -51.93 -0.35 0.81 16 29 H 0.27 8.07 8.72 -40.82 -0.36 7.71 16 30 H 0.06 1.17 7.59 -51.93 -0.39 0.78 16 31 H 0.06 1.37 5.84 -51.93 -0.30 1.07 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 1.07 6.88 -51.93 -0.36 0.71 16 39 H 0.34 3.13 8.99 -39.29 -0.35 2.77 16 40 H 0.34 3.09 9.08 -39.29 -0.36 2.74 16 41 H 0.06 1.36 6.37 -51.93 -0.33 1.03 16 42 H 0.06 1.14 6.73 -51.93 -0.35 0.79 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -28.86 311.23 -8.08 -36.93 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.51 Total: 6.48 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.54 Total: -21.43 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.39 Total: -47.98 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.32 Total: 21.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.86 -8.08 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723901130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.980 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds