Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.46805 * 2 1 4 4 H 1.08996 * 109.46816 * 303.58192 * 3 2 1 5 5 C 1.50699 * 109.46736 * 183.59075 * 3 2 1 6 6 H 1.08002 * 119.99737 * 245.13881 * 5 3 2 7 7 C 1.37880 * 120.00537 * 65.13599 * 5 3 2 8 8 N 1.31508 * 120.00004 * 187.18626 * 7 5 3 9 9 Si 1.86799 * 119.99639 * 7.18667 * 7 5 3 10 10 H 1.48503 * 109.47017 * 269.99767 * 9 7 5 11 11 H 1.48504 * 109.47014 * 150.00077 * 9 7 5 12 12 H 1.48499 * 109.47322 * 29.99573 * 9 7 5 13 13 N 1.46897 * 109.47093 * 63.58628 * 3 2 1 14 14 C 1.48532 * 110.99700 * 62.60472 * 13 3 2 15 15 C 1.54941 * 103.22508 * 159.71864 * 14 13 3 16 16 H 1.08999 * 110.87689 * 81.00960 * 15 14 13 17 17 C 1.53000 * 110.72340 * 204.22803 * 15 14 13 18 18 C 1.54598 * 102.92110 * 322.58268 * 15 14 13 19 19 H 1.08997 * 110.30754 * 263.04215 * 18 15 14 20 20 C 1.53001 * 110.30936 * 140.87279 * 18 15 14 21 21 C 1.53000 * 109.47265 * 177.82901 * 20 18 15 22 22 N 1.46893 * 109.47078 * 179.97438 * 21 20 18 23 23 C 1.47899 * 110.99736 * 179.97438 * 13 3 2 24 24 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46862 * 300.00200 * 1 2 3 26 26 H 1.09000 * 109.46686 * 60.00009 * 1 2 3 27 27 H 1.08998 * 109.46862 * 239.99800 * 2 1 3 28 28 H 1.08994 * 109.47008 * 119.99675 * 2 1 3 29 29 H 0.97003 * 120.00357 * 354.94663 * 8 7 5 30 30 H 1.08998 * 110.66656 * 278.15050 * 14 13 3 31 31 H 1.08998 * 110.66925 * 41.28231 * 14 13 3 32 32 H 1.09007 * 109.47256 * 173.50377 * 17 15 14 33 33 H 1.09001 * 109.46733 * 293.49427 * 17 15 14 34 34 H 1.08997 * 109.47209 * 53.49661 * 17 15 14 35 35 H 1.08998 * 109.47441 * 297.83330 * 20 18 15 36 36 H 1.09004 * 109.46911 * 57.83099 * 20 18 15 37 37 H 1.08998 * 109.47241 * 300.00551 * 21 20 18 38 38 H 1.09002 * 109.46482 * 60.00330 * 21 20 18 39 39 H 1.00907 * 111.00191 * 56.05378 * 22 21 20 40 40 H 1.00903 * 110.99953 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.92084 * 333.51182 * 23 13 3 42 42 H 1.09002 * 109.91984 * 94.80444 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6252 1.9745 -0.8561 5 6 3.5444 1.4435 -0.0890 6 1 4.1338 1.8193 0.7343 7 6 4.1684 0.9646 -1.2214 8 7 5.4767 0.8332 -1.2455 9 14 3.1554 0.5025 -2.7213 10 1 2.7646 -0.9274 -2.6333 11 1 3.9614 0.7207 -3.9493 12 1 1.9349 1.3469 -2.7737 13 7 1.6223 2.1096 1.2404 14 6 2.2209 1.4481 2.4279 15 6 2.1279 2.5380 3.5253 16 1 1.1294 2.5659 3.9614 17 6 3.1836 2.3073 4.6084 18 6 2.4205 3.8401 2.7448 19 1 3.4697 4.1162 2.8494 20 6 1.5201 4.9720 3.2439 21 6 1.8625 6.2629 2.4974 22 7 0.9976 7.3495 2.9760 23 6 2.0991 3.5092 1.2759 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 6.0090 1.1411 -0.4953 30 1 1.6432 0.5680 2.7101 31 1 3.2606 1.1822 2.2370 32 1 3.1775 3.1448 5.3061 33 1 2.9581 1.3857 5.1451 34 1 4.1673 2.2269 4.1458 35 1 0.4769 4.7133 3.0626 36 1 1.6779 5.1175 4.3125 37 1 2.9057 6.5217 2.6786 38 1 1.7046 6.1173 1.4287 39 1 1.0773 7.4615 3.9757 40 1 1.2041 8.2135 2.4976 41 1 2.9975 3.6111 0.6671 42 1 1.3199 4.1764 0.9073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723901130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = -40.108983 kcal Electronic energy + Delta-G solvation = -18604.458071 eV Core-core repulsion = 16003.330652 eV Total energy + Delta-G solvation = -2601.127420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60668 -37.31784 -35.63647 -34.16856 -32.66629 -31.70342 -28.88826 -27.38043 -26.20593 -24.37970 -23.37545 -21.74196 -21.10034 -20.63941 -19.37098 -17.26966 -16.92511 -16.30932 -16.00164 -15.53355 -15.08262 -14.90616 -14.60004 -14.41888 -14.32512 -14.07472 -13.69742 -13.39190 -13.28896 -12.82050 -12.68690 -12.48043 -12.39300 -12.24279 -12.16248 -11.67818 -11.55812 -11.52002 -11.33882 -11.22521 -11.16131 -10.87198 -10.64258 -9.62397 -9.23707 -8.54282 -6.38241 1.40044 1.49165 1.66086 2.43860 3.07597 3.39080 3.55173 3.72884 3.78709 4.10667 4.24571 4.34200 4.39629 4.43570 4.48693 4.62000 4.64746 4.67789 4.72502 4.78201 4.80403 4.92410 4.98830 5.03063 5.11083 5.17139 5.18165 5.26791 5.30068 5.32480 5.35799 5.46928 5.55206 5.61816 5.90709 5.98689 6.20601 6.22049 6.34664 6.61918 6.72477 7.39415 8.64698 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.007366 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.992097 B = 3800.141109 C = 3959.837028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.602 4.602 6 H 0.025 0.975 7 C -0.023 4.023 8 N -0.947 5.947 9 Si 1.087 2.913 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.254 1.254 13 N -0.502 5.502 14 C 0.044 3.956 15 C -0.083 4.083 16 H 0.092 0.908 17 C -0.135 4.135 18 C -0.084 4.084 19 H 0.056 0.944 20 C -0.089 4.089 21 C 0.061 3.939 22 N -0.854 5.854 23 C 0.044 3.956 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.249 0.751 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.058 0.942 39 H 0.348 0.652 40 H 0.349 0.651 41 H 0.019 0.981 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 6.917 9.837 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.063 3.937 4 H 0.045 0.955 5 C -0.641 4.641 6 H 0.044 0.956 7 C -0.221 4.221 8 N -0.584 5.584 9 Si 0.910 3.090 10 H -0.189 1.189 11 H -0.222 1.222 12 H -0.178 1.178 13 N -0.225 5.225 14 C -0.085 4.085 15 C -0.102 4.102 16 H 0.111 0.889 17 C -0.193 4.193 18 C -0.103 4.103 19 H 0.074 0.926 20 C -0.127 4.127 21 C -0.070 4.070 22 N -0.385 5.385 23 C -0.085 4.085 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.038 0.962 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.895 5.811 8.048 14.740 hybrid contribution 2.730 1.018 1.485 3.270 sum -8.166 6.829 9.533 14.290 Atomic orbital electron populations 1.21656 0.94399 1.01104 1.02045 1.21766 0.96502 0.97267 1.00029 1.19766 0.91832 0.92101 0.89966 0.95483 1.22780 0.93808 1.44782 1.02691 0.95645 1.27050 0.97210 0.93999 1.03810 1.70948 1.06756 1.45889 1.34830 0.83468 0.74719 0.78267 0.72514 1.18886 1.22161 1.17825 1.65015 1.53279 1.01704 1.02481 1.23155 0.97159 0.97423 0.90716 1.22107 1.00298 0.93177 0.94626 0.88932 1.21717 0.97162 1.02500 0.97892 1.21954 0.98849 0.95733 0.93789 0.92599 1.21441 0.99267 0.92356 0.99679 1.21759 0.93853 0.91829 0.99526 1.58679 1.59500 1.09544 1.10803 1.22816 0.97976 0.91159 0.96505 0.92302 0.91770 0.93413 0.94163 0.93496 0.94254 0.91036 0.96021 0.90779 0.91651 0.94896 0.91425 0.90694 0.95783 0.92315 0.83934 0.83842 0.96239 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.79 71.98 0.70 -3.89 16 2 C -0.12 -5.01 4.90 30.60 0.15 -4.86 16 3 C 0.17 8.12 1.41 44.17 0.06 8.19 16 4 H 0.03 1.34 6.61 -2.39 -0.02 1.33 16 5 C -0.60 -33.76 6.69 25.60 0.17 -33.59 16 6 H 0.03 1.58 6.26 -2.91 -0.02 1.56 16 7 C -0.02 -1.36 5.42 84.66 0.46 -0.90 16 8 N -0.95 -60.18 13.70 21.45 0.29 -59.88 16 9 Si 1.09 51.66 25.41 68.60 1.74 53.41 16 10 H -0.26 -11.63 6.74 99.48 0.67 -10.96 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.25 -11.00 6.37 99.48 0.63 -10.37 16 13 N -0.50 -20.66 4.70 -862.29 -4.05 -24.71 16 14 C 0.04 1.68 4.73 86.65 0.41 2.09 16 15 C -0.08 -2.50 3.20 -9.59 -0.03 -2.53 16 16 H 0.09 2.50 7.86 -2.39 -0.02 2.48 16 17 C -0.14 -3.53 9.16 71.98 0.66 -2.88 16 18 C -0.08 -2.60 2.61 -9.92 -0.03 -2.63 16 19 H 0.06 1.85 7.85 -2.39 -0.02 1.83 16 20 C -0.09 -2.20 4.67 30.59 0.14 -2.05 16 21 C 0.06 1.45 6.61 86.30 0.57 2.02 16 22 N -0.85 -16.52 9.62 -186.73 -1.80 -18.32 16 23 C 0.04 1.71 5.55 86.44 0.48 2.19 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.78 4.47 -2.39 -0.01 1.77 16 28 H 0.05 2.02 6.83 -2.39 -0.02 2.01 16 29 H 0.25 16.08 8.72 -92.71 -0.81 15.27 16 30 H 0.07 2.60 7.59 -2.39 -0.02 2.59 16 31 H 0.02 1.01 5.84 -2.39 -0.01 0.99 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 1.60 6.88 -2.39 -0.02 1.58 16 39 H 0.35 5.42 8.99 -89.69 -0.81 4.61 16 40 H 0.35 5.63 9.08 -89.69 -0.81 4.81 16 41 H 0.02 0.91 6.37 -2.38 -0.02 0.89 16 42 H 0.07 2.61 6.73 -2.39 -0.02 2.60 16 Total: -1.00 -64.66 311.23 -0.83 -65.48 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.77 Total: 22.86 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.75 Total: -38.83 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -5.55 Total: -102.91 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 1.74 Total: 53.41 kcal Total: -64.66 -0.83 -65.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723901130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.374 kcal (2) G-P(sol) polarization free energy of solvation -64.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds