Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 H 1.09000 * 109.47211 * 55.83995 * 3 2 1 5 5 C 1.50707 * 109.46846 * 175.84059 * 3 2 1 6 6 H 1.08001 * 119.99951 * 120.00166 * 5 3 2 7 7 C 1.37874 * 119.99795 * 299.99670 * 5 3 2 8 8 N 1.31508 * 120.00473 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99851 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47086 * 60.00258 * 9 7 5 11 11 H 1.48501 * 109.47435 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47309 * 299.99985 * 9 7 5 13 13 N 1.46896 * 109.47009 * 295.83850 * 3 2 1 14 14 C 1.47446 * 111.00102 * 298.94955 * 13 3 2 15 15 C 1.54318 * 107.23289 * 236.74540 * 14 13 3 16 16 H 1.08999 * 110.70869 * 96.27844 * 15 14 13 17 17 C 1.53008 * 110.70556 * 219.33441 * 15 14 13 18 18 C 1.55141 * 103.01851 * 337.71319 * 15 14 13 19 19 H 1.08994 * 110.99255 * 277.55947 * 18 15 14 20 20 C 1.52999 * 110.98815 * 153.74680 * 18 15 14 21 21 C 1.52998 * 109.47222 * 175.00118 * 20 18 15 22 22 N 1.46904 * 109.47522 * 179.97438 * 21 20 18 23 23 C 1.47846 * 111.00075 * 178.10902 * 13 3 2 24 24 H 1.08998 * 109.47285 * 305.07394 * 1 2 3 25 25 H 1.08997 * 109.46932 * 65.07937 * 1 2 3 26 26 H 1.09002 * 109.46909 * 185.07838 * 1 2 3 27 27 H 1.08999 * 109.47290 * 240.00242 * 2 1 3 28 28 H 1.09003 * 109.47144 * 120.00014 * 2 1 3 29 29 H 0.97001 * 120.00465 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.88804 * 117.33993 * 14 13 3 31 31 H 1.08997 * 110.02533 * 356.22306 * 14 13 3 32 32 H 1.09006 * 109.47009 * 58.54491 * 17 15 14 33 33 H 1.08997 * 109.46787 * 298.54731 * 17 15 14 34 34 H 1.08995 * 109.47546 * 178.54498 * 17 15 14 35 35 H 1.09000 * 109.47379 * 295.00050 * 20 18 15 36 36 H 1.09001 * 109.47203 * 55.00164 * 20 18 15 37 37 H 1.08998 * 109.47380 * 300.00057 * 21 20 18 38 38 H 1.09001 * 109.46994 * 59.99919 * 21 20 18 39 39 H 1.00901 * 110.99321 * 56.04367 * 22 21 20 40 40 H 1.00893 * 111.00141 * 180.02562 * 22 21 20 41 41 H 1.08996 * 110.37218 * 265.19601 * 23 13 3 42 42 H 1.09008 * 110.36976 * 27.53117 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6170 1.9775 0.8504 5 6 3.5435 1.4439 0.1031 6 1 4.1380 1.8923 -0.6792 7 6 4.1600 0.8726 1.1960 8 7 3.4361 0.3263 2.1483 9 14 6.0236 0.8748 1.3241 10 1 6.5181 2.2751 1.3245 11 1 6.4340 0.2042 2.5839 12 1 6.6003 0.1465 0.1656 13 7 1.6340 2.1054 -1.2465 14 6 2.2095 1.4225 -2.4197 15 6 3.0205 2.4726 -3.2077 16 1 4.0759 2.4251 -2.9397 17 6 2.8377 2.2782 -4.7144 18 6 2.3936 3.8152 -2.7480 19 1 1.4848 4.0341 -3.3085 20 6 3.4003 4.9608 -2.8716 21 6 2.7120 6.2837 -2.5295 22 7 3.6787 7.3836 -2.6475 23 6 2.0714 3.5176 -1.2624 24 1 -0.3634 0.5905 0.8410 25 1 -0.3633 0.4330 -0.9320 26 1 -0.3633 -1.0237 0.0910 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8699 -0.0760 2.9171 30 1 1.4109 1.0245 -3.0458 31 1 2.8651 0.6139 -2.0966 32 1 1.7800 2.3583 -4.9654 33 1 3.2056 1.2929 -5.0007 34 1 3.3973 3.0448 -5.2502 35 1 4.2280 4.7931 -2.1824 36 1 3.7802 5.0022 -3.8924 37 1 1.8843 6.4515 -3.2186 38 1 2.3322 6.2423 -1.5087 39 1 4.0938 7.4029 -3.5670 40 1 3.2481 8.2687 -2.4261 41 1 1.2698 4.1670 -0.9105 42 1 2.9624 3.6458 -0.6477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723901132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -19.976274 kcal Electronic energy + Delta-G solvation = -18608.380793 eV Core-core repulsion = 16008.126393 eV Total energy + Delta-G solvation = -2600.254400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.94484 -35.70415 -34.17076 -31.89539 -30.85712 -30.32443 -26.86199 -25.90500 -24.80132 -22.98034 -21.76674 -20.28247 -19.62276 -18.51044 -16.44816 -16.06913 -15.28580 -14.81249 -14.45950 -13.92426 -13.77247 -13.24798 -13.12878 -12.76560 -12.58994 -12.23148 -12.00785 -11.62118 -11.45523 -11.26691 -11.14595 -11.05208 -10.83155 -10.65966 -10.36808 -10.11179 -10.00872 -9.99349 -9.68099 -9.49570 -9.41496 -8.98163 -8.68932 -8.31808 -7.06775 -5.94672 -4.07312 3.30455 3.35461 3.38467 4.42742 4.54979 5.00535 5.15984 5.19449 5.29341 5.40377 5.46270 5.58063 5.72285 5.90434 5.96168 5.98260 6.10545 6.25807 6.30626 6.36145 6.41215 6.47548 6.49556 6.58857 6.69469 6.72946 6.86449 6.92010 7.05968 7.12829 7.14340 7.22716 7.38339 7.40739 7.67809 7.79654 8.05191 8.22326 8.36954 8.51457 9.03579 9.59457 11.04503 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.008564 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.597831 B = 3268.630842 C = 3954.602992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.208 3.792 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.107 4.107 16 H 0.072 0.928 17 C -0.136 4.136 18 C -0.091 4.091 19 H 0.070 0.930 20 C -0.105 4.105 21 C 0.062 3.938 22 N -0.853 5.853 23 C 0.052 3.948 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.336 0.664 40 H 0.338 0.662 41 H 0.055 0.945 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 7.013 -10.281 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.101 3.899 4 H 0.054 0.946 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.127 4.127 16 H 0.091 0.909 17 C -0.194 4.194 18 C -0.110 4.110 19 H 0.089 0.911 20 C -0.144 4.144 21 C -0.069 4.069 22 N -0.382 5.382 23 C -0.076 4.076 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.259 6.494 -9.505 11.731 hybrid contribution 1.353 0.337 -0.516 1.487 sum -0.906 6.831 -10.021 12.161 Atomic orbital electron populations 1.21694 0.98919 0.98283 1.00472 1.21626 0.92206 0.99287 1.01913 1.19424 0.92841 0.91036 0.86585 0.94572 1.21743 0.92683 1.37633 1.05705 0.92526 1.24911 0.97694 0.95149 0.95707 1.69862 1.34881 1.38119 1.09597 0.86783 0.86446 0.78264 0.77293 1.20285 1.21303 1.20402 1.63912 1.56196 1.01151 1.03915 1.22673 0.96005 0.96644 0.91876 1.22398 1.00176 0.95443 0.94652 0.90941 1.21725 1.01073 1.00791 0.95798 1.22315 0.97371 0.93615 0.97715 0.91118 1.21521 0.98743 0.93008 1.01081 1.21846 0.92735 0.91044 1.01237 1.58712 1.37500 1.06947 1.35008 1.22946 0.99373 0.91057 0.94197 0.94189 0.93654 0.95680 0.94940 0.89027 0.92902 0.93068 0.91498 0.92948 0.93034 0.93510 0.90963 0.92811 0.95998 0.90653 0.85216 0.85059 0.92617 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.73 37.16 0.36 -2.47 16 2 C -0.11 -2.68 5.07 -26.73 -0.14 -2.81 16 3 C 0.21 5.14 1.77 -68.86 -0.12 5.02 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 5 C -0.54 -14.27 6.22 -34.44 -0.21 -14.48 16 6 H 0.06 1.50 6.36 -52.49 -0.33 1.17 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -11.24 4.70 -224.68 -1.06 -12.29 16 14 C 0.06 1.10 4.94 -2.83 -0.01 1.09 16 15 C -0.11 -1.79 2.79 -88.79 -0.25 -2.04 16 16 H 0.07 1.32 7.78 -51.93 -0.40 0.92 16 17 C -0.14 -1.85 9.13 37.16 0.34 -1.51 16 18 C -0.09 -1.44 2.45 -88.48 -0.22 -1.65 16 19 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 20 C -0.11 -1.50 4.99 -26.73 -0.13 -1.63 16 21 C 0.06 0.79 6.69 -3.82 -0.03 0.76 16 22 N -0.85 -9.70 9.62 -10.37 -0.10 -9.80 16 23 C 0.05 1.02 5.32 -2.30 -0.01 1.00 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.76 6.46 -51.93 -0.34 0.43 16 28 H 0.09 2.45 5.97 -51.93 -0.31 2.14 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 0.95 7.82 -51.93 -0.41 0.54 16 31 H 0.07 1.47 5.66 -51.93 -0.29 1.18 16 32 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 1.05 7.75 -51.93 -0.40 0.64 16 39 H 0.34 3.29 8.99 -39.29 -0.35 2.94 16 40 H 0.34 3.16 9.08 -39.30 -0.36 2.80 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.38 6.22 -51.92 -0.32 1.06 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -27.56 318.40 -8.97 -36.53 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.70 Total: 5.89 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.51 Total: -16.98 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.53 Total: -46.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.56 -8.97 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723901132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.553 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds