Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 H 1.09000 * 109.47211 * 55.83995 * 3 2 1 5 5 C 1.50707 * 109.46846 * 175.84059 * 3 2 1 6 6 H 1.08001 * 119.99951 * 120.00166 * 5 3 2 7 7 C 1.37874 * 119.99795 * 299.99670 * 5 3 2 8 8 N 1.31508 * 120.00473 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99851 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47086 * 60.00258 * 9 7 5 11 11 H 1.48501 * 109.47435 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47309 * 299.99985 * 9 7 5 13 13 N 1.46896 * 109.47009 * 295.83850 * 3 2 1 14 14 C 1.47446 * 111.00102 * 298.94955 * 13 3 2 15 15 C 1.54318 * 107.23289 * 236.74540 * 14 13 3 16 16 H 1.08999 * 110.70869 * 96.27844 * 15 14 13 17 17 C 1.53008 * 110.70556 * 219.33441 * 15 14 13 18 18 C 1.55141 * 103.01851 * 337.71319 * 15 14 13 19 19 H 1.08994 * 110.99255 * 277.55947 * 18 15 14 20 20 C 1.52999 * 110.98815 * 153.74680 * 18 15 14 21 21 C 1.52998 * 109.47222 * 175.00118 * 20 18 15 22 22 N 1.46904 * 109.47522 * 179.97438 * 21 20 18 23 23 C 1.47846 * 111.00075 * 178.10902 * 13 3 2 24 24 H 1.08998 * 109.47285 * 305.07394 * 1 2 3 25 25 H 1.08997 * 109.46932 * 65.07937 * 1 2 3 26 26 H 1.09002 * 109.46909 * 185.07838 * 1 2 3 27 27 H 1.08999 * 109.47290 * 240.00242 * 2 1 3 28 28 H 1.09003 * 109.47144 * 120.00014 * 2 1 3 29 29 H 0.97001 * 120.00465 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.88804 * 117.33993 * 14 13 3 31 31 H 1.08997 * 110.02533 * 356.22306 * 14 13 3 32 32 H 1.09006 * 109.47009 * 58.54491 * 17 15 14 33 33 H 1.08997 * 109.46787 * 298.54731 * 17 15 14 34 34 H 1.08995 * 109.47546 * 178.54498 * 17 15 14 35 35 H 1.09000 * 109.47379 * 295.00050 * 20 18 15 36 36 H 1.09001 * 109.47203 * 55.00164 * 20 18 15 37 37 H 1.08998 * 109.47380 * 300.00057 * 21 20 18 38 38 H 1.09001 * 109.46994 * 59.99919 * 21 20 18 39 39 H 1.00901 * 110.99321 * 56.04367 * 22 21 20 40 40 H 1.00893 * 111.00141 * 180.02562 * 22 21 20 41 41 H 1.08996 * 110.37218 * 265.19601 * 23 13 3 42 42 H 1.09008 * 110.36976 * 27.53117 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6170 1.9775 0.8504 5 6 3.5435 1.4439 0.1031 6 1 4.1380 1.8923 -0.6792 7 6 4.1600 0.8726 1.1960 8 7 3.4361 0.3263 2.1483 9 14 6.0236 0.8748 1.3241 10 1 6.5181 2.2751 1.3245 11 1 6.4340 0.2042 2.5839 12 1 6.6003 0.1465 0.1656 13 7 1.6340 2.1054 -1.2465 14 6 2.2095 1.4225 -2.4197 15 6 3.0205 2.4726 -3.2077 16 1 4.0759 2.4251 -2.9397 17 6 2.8377 2.2782 -4.7144 18 6 2.3936 3.8152 -2.7480 19 1 1.4848 4.0341 -3.3085 20 6 3.4003 4.9608 -2.8716 21 6 2.7120 6.2837 -2.5295 22 7 3.6787 7.3836 -2.6475 23 6 2.0714 3.5176 -1.2624 24 1 -0.3634 0.5905 0.8410 25 1 -0.3633 0.4330 -0.9320 26 1 -0.3633 -1.0237 0.0910 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8699 -0.0760 2.9171 30 1 1.4109 1.0245 -3.0458 31 1 2.8651 0.6139 -2.0966 32 1 1.7800 2.3583 -4.9654 33 1 3.2056 1.2929 -5.0007 34 1 3.3973 3.0448 -5.2502 35 1 4.2280 4.7931 -2.1824 36 1 3.7802 5.0022 -3.8924 37 1 1.8843 6.4515 -3.2186 38 1 2.3322 6.2423 -1.5087 39 1 4.0938 7.4029 -3.5670 40 1 3.2481 8.2687 -2.4261 41 1 1.2698 4.1670 -0.9105 42 1 2.9624 3.6458 -0.6477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723901132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = -38.423279 kcal Electronic energy + Delta-G solvation = -18609.180715 eV Core-core repulsion = 16008.126393 eV Total energy + Delta-G solvation = -2601.054322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49630 -37.13576 -35.58363 -33.82657 -32.43579 -31.61528 -28.70120 -27.33289 -26.33003 -24.63981 -23.20171 -21.79306 -21.08076 -20.21728 -18.45086 -17.40890 -16.79486 -16.16872 -16.01856 -15.41876 -15.09385 -14.73732 -14.58276 -14.40037 -14.15410 -13.71354 -13.45940 -13.23511 -13.07096 -12.85907 -12.73309 -12.59918 -12.39270 -12.33020 -12.05112 -11.77836 -11.62343 -11.49323 -11.37062 -11.20449 -10.98963 -10.90549 -10.42160 -9.57269 -8.89233 -8.02005 -6.23295 1.36027 1.36932 1.43856 2.39413 3.15887 3.45531 3.71130 3.79242 3.89276 4.11973 4.31088 4.39646 4.57510 4.60212 4.66192 4.69239 4.73542 4.74469 4.86303 4.91345 4.95671 5.07118 5.12142 5.15901 5.22818 5.25631 5.29842 5.36862 5.41467 5.47317 5.52778 5.60858 5.70533 5.80245 6.07127 6.23141 6.27061 6.44552 6.64507 6.66152 6.98693 7.46323 8.92882 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.008564 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.597831 B = 3268.630842 C = 3954.602992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.216 3.784 4 H -0.003 1.003 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.529 5.529 14 C 0.056 3.944 15 C -0.104 4.104 16 H 0.051 0.949 17 C -0.128 4.128 18 C -0.075 4.075 19 H 0.091 0.909 20 C -0.097 4.097 21 C 0.067 3.933 22 N -0.863 5.863 23 C 0.051 3.949 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.347 0.653 40 H 0.350 0.650 41 H 0.061 0.939 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 7.867 -12.587 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.123 4.123 16 H 0.069 0.931 17 C -0.186 4.186 18 C -0.094 4.094 19 H 0.109 0.891 20 C -0.136 4.136 21 C -0.064 4.064 22 N -0.394 5.394 23 C -0.077 4.077 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.080 0.920 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.417 7.362 -11.829 14.141 hybrid contribution 1.386 0.097 0.208 1.405 sum -1.031 7.459 -11.621 13.847 Atomic orbital electron populations 1.21553 0.96283 0.99610 1.00689 1.21468 0.94524 0.98238 1.00307 1.19164 0.91673 0.91349 0.86995 0.98487 1.21955 0.93828 1.36909 1.05382 0.93154 1.25598 1.01584 0.95173 0.95633 1.69990 1.36267 1.38929 1.10006 0.85877 0.81859 0.78137 0.77396 1.20213 1.20869 1.19847 1.63863 1.56254 1.01994 1.03108 1.22698 0.96332 0.96555 0.91612 1.22343 0.98376 0.94789 0.96824 0.93051 1.21662 1.02266 1.01776 0.92854 1.22238 0.98518 0.93875 0.94805 0.89106 1.21419 0.97392 0.93194 1.01551 1.21709 0.93327 0.90693 1.00673 1.58636 1.37492 1.07272 1.36003 1.22955 0.98021 0.90177 0.96593 0.94935 0.92543 0.93590 0.95000 0.92042 0.93012 0.91381 0.94518 0.91733 0.92672 0.91544 0.93863 0.90637 0.94074 0.92438 0.83977 0.83685 0.92039 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.11 -5.22 5.07 30.60 0.16 -5.07 16 3 C 0.22 11.03 1.77 44.17 0.08 11.11 16 4 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 5 C -0.54 -29.67 6.22 25.60 0.16 -29.51 16 6 H 0.05 2.77 6.36 -2.91 -0.02 2.75 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.94 44.51 29.54 68.60 2.03 46.53 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.53 -22.65 4.70 -864.74 -4.07 -26.72 16 14 C 0.06 2.16 4.94 86.65 0.43 2.59 16 15 C -0.10 -3.32 2.79 -9.61 -0.03 -3.34 16 16 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 17 C -0.13 -3.04 9.13 71.98 0.66 -2.38 16 18 C -0.07 -2.24 2.45 -9.41 -0.02 -2.26 16 19 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 20 C -0.10 -2.59 4.99 30.59 0.15 -2.44 16 21 C 0.07 1.56 6.69 86.30 0.58 2.14 16 22 N -0.86 -17.80 9.62 -186.71 -1.80 -19.59 16 23 C 0.05 1.98 5.32 86.77 0.46 2.44 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 2.17 7.87 -2.39 -0.02 2.15 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.52 6.46 -2.39 -0.02 1.50 16 28 H 0.06 3.39 5.97 -2.39 -0.01 3.37 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 31 H 0.04 1.63 5.66 -2.39 -0.01 1.62 16 32 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.41 7.96 -2.39 -0.02 1.39 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.54 7.75 -2.39 -0.02 1.53 16 39 H 0.35 5.86 8.99 -89.69 -0.81 5.06 16 40 H 0.35 5.80 9.08 -89.70 -0.81 4.98 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.03 1.29 6.22 -2.38 -0.01 1.28 16 Total: -1.00 -60.83 318.40 -0.46 -61.30 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.63 Total: 20.94 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.77 Total: -29.58 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -5.62 Total: -99.18 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.83 -0.46 -61.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723901132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.874 kcal (2) G-P(sol) polarization free energy of solvation -60.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds