Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46726 * 2 1 4 4 H 1.09004 * 109.47398 * 303.39293 * 3 2 1 5 5 C 1.50705 * 109.46657 * 183.39593 * 3 2 1 6 6 H 1.07998 * 119.99928 * 243.09699 * 5 3 2 7 7 C 1.37877 * 119.99872 * 63.10427 * 5 3 2 8 8 N 1.31514 * 120.00051 * 7.04521 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 187.04878 * 7 5 3 10 10 H 1.48506 * 109.46981 * 84.98725 * 9 7 5 11 11 H 1.48501 * 109.47140 * 204.98643 * 9 7 5 12 12 H 1.48501 * 109.47287 * 324.98965 * 9 7 5 13 13 N 1.46896 * 109.47585 * 63.39769 * 3 2 1 14 14 C 1.48550 * 111.00533 * 185.29162 * 13 3 2 15 15 C 1.54379 * 104.59744 * 200.95853 * 14 13 3 16 16 H 1.08999 * 110.32506 * 264.95483 * 15 14 13 17 17 C 1.53007 * 110.32307 * 142.74603 * 15 14 13 18 18 C 1.52996 * 109.47146 * 69.36522 * 17 15 14 19 19 N 1.46900 * 109.47411 * 179.97438 * 18 17 15 20 20 C 1.54259 * 105.06028 * 23.85295 * 15 14 13 21 21 H 1.09002 * 110.32122 * 241.10628 * 20 15 14 22 22 C 1.52997 * 110.32640 * 118.89520 * 20 15 14 23 23 C 1.48567 * 111.00095 * 69.86577 * 13 3 2 24 24 H 1.08994 * 109.47019 * 60.00130 * 1 2 3 25 25 H 1.08994 * 109.46959 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46824 * 299.99987 * 1 2 3 27 27 H 1.08997 * 109.46824 * 240.00013 * 2 1 3 28 28 H 1.08994 * 109.47019 * 119.99870 * 2 1 3 29 29 H 0.96997 * 119.99611 * 180.02562 * 8 7 5 30 30 H 1.09004 * 110.41004 * 319.73897 * 14 13 3 31 31 H 1.08994 * 110.41392 * 82.17541 * 14 13 3 32 32 H 1.09001 * 109.46589 * 189.36256 * 17 15 14 33 33 H 1.09001 * 109.47136 * 309.36161 * 17 15 14 34 34 H 1.09000 * 109.46869 * 300.00107 * 18 17 15 35 35 H 1.09001 * 109.47398 * 59.99800 * 18 17 15 36 36 H 1.00904 * 110.99485 * 56.04429 * 19 18 17 37 37 H 1.00893 * 111.00299 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47344 * 302.90992 * 22 20 15 39 39 H 1.08995 * 109.46967 * 62.90769 * 22 20 15 40 40 H 1.09006 * 109.47224 * 182.90851 * 22 20 15 41 41 H 1.08994 * 110.41167 * 277.82741 * 23 13 3 42 42 H 1.09005 * 110.40367 * 40.26734 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6278 1.9737 -0.8580 5 6 3.5447 1.4434 -0.0842 6 1 4.1306 1.8503 0.7266 7 6 4.1732 0.9247 -1.1964 8 7 3.4638 0.5570 -2.2409 9 14 6.0323 0.7443 -1.2194 10 1 6.4129 -0.5411 -0.5804 11 1 6.5139 0.7604 -2.6241 12 1 6.6482 1.8700 -0.4720 13 7 1.6185 2.1110 1.2383 14 6 1.9862 3.5502 1.2182 15 6 1.9921 3.9709 2.7036 16 1 1.0319 4.4083 2.9770 17 6 3.1250 4.9643 2.9700 18 6 2.8090 6.2944 2.2831 19 7 3.8964 7.2483 2.5393 20 6 2.2291 2.6648 3.4893 21 1 1.3851 2.4610 4.1483 22 6 3.5251 2.7581 4.2970 23 6 2.3463 1.5646 2.4126 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9060 0.1918 -3.0232 30 1 2.9758 3.6836 0.7813 31 1 1.2443 4.1244 0.6634 32 1 3.2229 5.1241 4.0437 33 1 4.0591 4.5644 2.5754 34 1 2.7110 6.1344 1.2093 35 1 1.8749 6.6942 2.6776 36 1 4.7843 6.8731 2.2409 37 1 3.7114 8.1353 2.0954 38 1 4.3565 2.9747 3.6262 39 1 3.4366 3.5553 5.0350 40 1 3.7056 1.8108 4.8052 41 1 1.8755 0.6439 2.7569 42 1 3.3924 1.3873 2.1626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723922497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = -14.432469 kcal Electronic energy + Delta-G solvation = -18686.032617 eV Core-core repulsion = 16086.018615 eV Total energy + Delta-G solvation = -2600.014002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08184 -35.76297 -34.16181 -31.98201 -30.92053 -30.10074 -27.11501 -25.62780 -24.90728 -23.04259 -21.89967 -20.79468 -19.08762 -18.36645 -16.46232 -15.65776 -15.48646 -15.17956 -14.61232 -13.97911 -13.80437 -13.25981 -13.09191 -12.84387 -12.67050 -12.00149 -11.97237 -11.80605 -11.46476 -11.26958 -11.10505 -10.92647 -10.85409 -10.58639 -10.40631 -10.08135 -10.04739 -9.84063 -9.77388 -9.63529 -9.39232 -9.11763 -8.65381 -8.36231 -7.16819 -6.02826 -4.11791 3.24718 3.31955 3.33588 4.37868 4.59678 5.06078 5.10931 5.21336 5.24496 5.38329 5.54654 5.67117 5.78831 5.85908 5.99577 6.03133 6.16791 6.20322 6.24773 6.33422 6.39186 6.45575 6.52386 6.63843 6.63910 6.68961 6.83237 6.90746 6.99877 7.08093 7.15149 7.17137 7.31962 7.43637 7.57283 7.72258 7.93175 8.13786 8.23356 8.41866 8.98745 9.53943 10.99685 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.008743 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.611127 B = 3201.926592 C = 3897.526938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.510 5.510 14 C 0.044 3.956 15 C -0.087 4.087 16 H 0.067 0.933 17 C -0.108 4.108 18 C 0.058 3.942 19 N -0.855 5.855 20 C -0.093 4.093 21 H 0.066 0.934 22 C -0.143 4.143 23 C 0.038 3.962 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.339 0.661 37 H 0.337 0.663 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 6.568 8.393 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C 0.095 3.905 4 H 0.058 0.942 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.233 5.233 14 C -0.084 4.084 15 C -0.106 4.106 16 H 0.086 0.914 17 C -0.146 4.146 18 C -0.073 4.073 19 N -0.383 5.383 20 C -0.112 4.112 21 H 0.084 0.916 22 C -0.200 4.200 23 C -0.091 4.091 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.085 6.314 8.982 11.175 hybrid contribution 2.084 -0.125 -1.365 2.495 sum -0.001 6.189 7.616 9.814 Atomic orbital electron populations 1.21706 0.98667 0.98436 1.00780 1.21446 0.92449 0.99166 1.01003 1.19361 0.92970 0.91100 0.87080 0.94169 1.21694 0.92673 1.40589 1.03295 0.92190 1.24911 0.97692 0.95389 0.95308 1.69940 1.35261 1.42521 1.04418 0.86768 0.86428 0.78624 0.77134 1.20553 1.21293 1.20134 1.65687 1.51709 1.01416 1.04527 1.22983 1.00000 0.91465 0.93978 1.21898 0.97640 0.94661 0.96426 0.91439 1.21751 0.98798 0.93378 1.00689 1.21875 0.94262 0.92835 0.98303 1.58802 1.05577 1.06730 1.67231 1.21900 0.97146 0.95441 0.96723 0.91593 1.21920 0.97847 1.00678 0.99573 1.23113 0.99358 0.96012 0.90577 0.94191 0.95615 0.93113 0.90527 0.94890 0.92908 0.92755 0.92367 0.91342 0.91866 0.95099 0.91505 0.84872 0.85199 0.92420 0.93002 0.93344 0.92182 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.79 37.16 0.36 -2.48 16 2 C -0.10 -2.42 5.25 -26.73 -0.14 -2.56 16 3 C 0.20 4.95 1.66 -68.86 -0.11 4.83 16 4 H 0.04 1.11 8.13 -51.93 -0.42 0.69 16 5 C -0.54 -14.24 6.54 -34.44 -0.23 -14.46 16 6 H 0.06 1.57 5.65 -52.49 -0.30 1.28 16 7 C 0.07 1.89 5.21 -17.82 -0.09 1.79 16 8 N -0.88 -24.84 11.88 55.43 0.66 -24.18 16 9 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.51 -10.75 4.74 -223.41 -1.06 -11.81 16 14 C 0.04 0.85 5.13 -2.19 -0.01 0.84 16 15 C -0.09 -1.35 3.06 -89.23 -0.27 -1.63 16 16 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 17 C -0.11 -1.51 3.67 -26.73 -0.10 -1.61 16 18 C 0.06 0.75 6.66 -3.83 -0.03 0.72 16 19 N -0.85 -9.92 9.62 -10.37 -0.10 -10.02 16 20 C -0.09 -1.48 3.65 -89.24 -0.33 -1.80 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.14 -2.02 7.91 37.16 0.29 -1.72 16 23 C 0.04 0.73 5.03 -2.18 -0.01 0.72 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 27 H 0.08 2.01 6.53 -51.93 -0.34 1.67 16 28 H 0.03 0.76 7.11 -51.93 -0.37 0.40 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 1.16 6.32 -51.93 -0.33 0.83 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 33 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 34 H 0.03 0.43 7.58 -51.93 -0.39 0.03 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.34 3.79 8.99 -39.29 -0.35 3.44 16 37 H 0.34 3.27 9.08 -39.30 -0.36 2.92 16 38 H 0.06 0.87 6.76 -51.93 -0.35 0.52 16 39 H 0.05 0.65 6.85 -51.93 -0.36 0.29 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 42 H 0.06 1.40 5.17 -51.93 -0.27 1.13 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -27.19 312.95 -8.89 -36.09 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.42 Total: 6.69 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -0.66 Total: -17.36 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.50 Total: -46.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.19 -8.89 -36.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723922497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.654 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds