Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46726 * 2 1 4 4 H 1.09004 * 109.47398 * 303.39293 * 3 2 1 5 5 C 1.50705 * 109.46657 * 183.39593 * 3 2 1 6 6 H 1.07998 * 119.99928 * 243.09699 * 5 3 2 7 7 C 1.37877 * 119.99872 * 63.10427 * 5 3 2 8 8 N 1.31514 * 120.00051 * 7.04521 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 187.04878 * 7 5 3 10 10 H 1.48506 * 109.46981 * 84.98725 * 9 7 5 11 11 H 1.48501 * 109.47140 * 204.98643 * 9 7 5 12 12 H 1.48501 * 109.47287 * 324.98965 * 9 7 5 13 13 N 1.46896 * 109.47585 * 63.39769 * 3 2 1 14 14 C 1.48550 * 111.00533 * 185.29162 * 13 3 2 15 15 C 1.54379 * 104.59744 * 200.95853 * 14 13 3 16 16 H 1.08999 * 110.32506 * 264.95483 * 15 14 13 17 17 C 1.53007 * 110.32307 * 142.74603 * 15 14 13 18 18 C 1.52996 * 109.47146 * 69.36522 * 17 15 14 19 19 N 1.46900 * 109.47411 * 179.97438 * 18 17 15 20 20 C 1.54259 * 105.06028 * 23.85295 * 15 14 13 21 21 H 1.09002 * 110.32122 * 241.10628 * 20 15 14 22 22 C 1.52997 * 110.32640 * 118.89520 * 20 15 14 23 23 C 1.48567 * 111.00095 * 69.86577 * 13 3 2 24 24 H 1.08994 * 109.47019 * 60.00130 * 1 2 3 25 25 H 1.08994 * 109.46959 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46824 * 299.99987 * 1 2 3 27 27 H 1.08997 * 109.46824 * 240.00013 * 2 1 3 28 28 H 1.08994 * 109.47019 * 119.99870 * 2 1 3 29 29 H 0.96997 * 119.99611 * 180.02562 * 8 7 5 30 30 H 1.09004 * 110.41004 * 319.73897 * 14 13 3 31 31 H 1.08994 * 110.41392 * 82.17541 * 14 13 3 32 32 H 1.09001 * 109.46589 * 189.36256 * 17 15 14 33 33 H 1.09001 * 109.47136 * 309.36161 * 17 15 14 34 34 H 1.09000 * 109.46869 * 300.00107 * 18 17 15 35 35 H 1.09001 * 109.47398 * 59.99800 * 18 17 15 36 36 H 1.00904 * 110.99485 * 56.04429 * 19 18 17 37 37 H 1.00893 * 111.00299 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47344 * 302.90992 * 22 20 15 39 39 H 1.08995 * 109.46967 * 62.90769 * 22 20 15 40 40 H 1.09006 * 109.47224 * 182.90851 * 22 20 15 41 41 H 1.08994 * 110.41167 * 277.82741 * 23 13 3 42 42 H 1.09005 * 110.40367 * 40.26734 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6278 1.9737 -0.8580 5 6 3.5447 1.4434 -0.0842 6 1 4.1306 1.8503 0.7266 7 6 4.1732 0.9247 -1.1964 8 7 3.4638 0.5570 -2.2409 9 14 6.0323 0.7443 -1.2194 10 1 6.4129 -0.5411 -0.5804 11 1 6.5139 0.7604 -2.6241 12 1 6.6482 1.8700 -0.4720 13 7 1.6185 2.1110 1.2383 14 6 1.9862 3.5502 1.2182 15 6 1.9921 3.9709 2.7036 16 1 1.0319 4.4083 2.9770 17 6 3.1250 4.9643 2.9700 18 6 2.8090 6.2944 2.2831 19 7 3.8964 7.2483 2.5393 20 6 2.2291 2.6648 3.4893 21 1 1.3851 2.4610 4.1483 22 6 3.5251 2.7581 4.2970 23 6 2.3463 1.5646 2.4126 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9060 0.1918 -3.0232 30 1 2.9758 3.6836 0.7813 31 1 1.2443 4.1244 0.6634 32 1 3.2229 5.1241 4.0437 33 1 4.0591 4.5644 2.5754 34 1 2.7110 6.1344 1.2093 35 1 1.8749 6.6942 2.6776 36 1 4.7843 6.8731 2.2409 37 1 3.7114 8.1353 2.0954 38 1 4.3565 2.9747 3.6262 39 1 3.4366 3.5553 5.0350 40 1 3.7056 1.8108 4.8052 41 1 1.8755 0.6439 2.7569 42 1 3.3924 1.3873 2.1626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723922497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = -32.561817 kcal Electronic energy + Delta-G solvation = -18686.818764 eV Core-core repulsion = 16086.018615 eV Total energy + Delta-G solvation = -2600.800150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57908 -37.26345 -35.50896 -33.88612 -32.56320 -31.35142 -28.87553 -27.03075 -26.50970 -24.73888 -23.20459 -22.30693 -20.94114 -19.71052 -18.38781 -17.07523 -16.81730 -16.61357 -16.06542 -15.51409 -15.26701 -14.98560 -14.40410 -14.37570 -14.09054 -13.69108 -13.50182 -13.36424 -13.12644 -12.84688 -12.62551 -12.51835 -12.43148 -12.15609 -11.91192 -11.81155 -11.56726 -11.45523 -11.28758 -11.25116 -11.06771 -10.91457 -10.44519 -9.61569 -8.98722 -8.08204 -6.25109 1.34269 1.36565 1.43771 2.37960 3.13764 3.48766 3.67117 3.85042 3.91900 4.14081 4.33855 4.42561 4.55234 4.57623 4.68409 4.71666 4.75228 4.78294 4.86096 4.89176 4.92122 5.00759 5.06537 5.15422 5.21998 5.24075 5.35425 5.40916 5.43076 5.44973 5.46795 5.62966 5.66413 5.76409 5.96106 6.18097 6.21101 6.36091 6.51540 6.58468 6.96630 7.43742 8.91218 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.008743 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.611127 B = 3201.926592 C = 3897.526938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C 0.209 3.791 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.511 5.511 14 C 0.045 3.955 15 C -0.076 4.076 16 H 0.084 0.916 17 C -0.098 4.098 18 C 0.061 3.939 19 N -0.855 5.855 20 C -0.087 4.087 21 H 0.084 0.916 22 C -0.137 4.137 23 C 0.038 3.962 24 H 0.032 0.968 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.077 0.923 36 H 0.341 0.659 37 H 0.348 0.652 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 7.321 10.469 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.136 4.136 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.234 5.234 14 C -0.083 4.083 15 C -0.096 4.096 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.070 4.070 19 N -0.384 5.384 20 C -0.106 4.106 21 H 0.102 0.898 22 C -0.195 4.195 23 C -0.090 4.090 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.079 7.082 11.072 13.307 hybrid contribution 2.055 -0.335 -2.015 2.897 sum -0.024 6.747 9.057 11.294 Atomic orbital electron populations 1.21567 0.96061 0.99928 1.00796 1.21303 0.94746 0.98125 0.99390 1.19112 0.91941 0.91429 0.87384 0.98175 1.21929 0.93763 1.39831 1.02976 0.92549 1.25615 1.01693 0.95436 0.95125 1.70063 1.36773 1.43523 1.04903 0.85830 0.81682 0.78657 0.77072 1.20129 1.21124 1.19583 1.65615 1.51771 1.02382 1.03656 1.22979 0.98238 0.90410 0.96700 1.21852 0.99229 0.95127 0.93385 0.89744 1.21642 0.97213 0.93302 1.01490 1.21800 0.95183 0.92721 0.97259 1.58792 1.05304 1.07020 1.67330 1.21895 0.98918 0.93800 0.95946 0.89799 1.21870 0.96122 1.01998 0.99467 1.23115 0.97426 0.97511 0.90993 0.94915 0.93376 0.92232 0.93566 0.94892 0.93023 0.95562 0.92521 0.89862 0.93562 0.96677 0.90450 0.84650 0.83910 0.93882 0.90675 0.92608 0.92149 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.79 71.98 0.70 -4.41 16 2 C -0.10 -4.67 5.25 30.60 0.16 -4.51 16 3 C 0.21 10.56 1.66 44.17 0.07 10.63 16 4 H 0.00 0.02 8.13 -2.38 -0.02 0.00 16 5 C -0.55 -29.38 6.54 25.60 0.17 -29.21 16 6 H 0.06 3.03 5.65 -2.91 -0.02 3.01 16 7 C 0.02 1.17 5.21 84.65 0.44 1.61 16 8 N -0.91 -52.88 11.88 21.45 0.25 -52.63 16 9 Si 0.94 43.55 29.54 68.60 2.03 45.57 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.51 -21.64 4.74 -860.72 -4.08 -25.72 16 14 C 0.05 1.74 5.13 86.45 0.44 2.18 16 15 C -0.08 -2.24 3.06 -9.90 -0.03 -2.27 16 16 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 17 C -0.10 -2.56 3.67 30.60 0.11 -2.45 16 18 C 0.06 1.47 6.66 86.30 0.57 2.05 16 19 N -0.85 -18.18 9.62 -186.72 -1.80 -19.98 16 20 C -0.09 -2.55 3.65 -9.90 -0.04 -2.59 16 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 22 C -0.14 -3.52 7.91 71.98 0.57 -2.95 16 23 C 0.04 1.44 5.03 86.45 0.43 1.88 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 27 H 0.05 2.50 6.53 -2.39 -0.02 2.48 16 28 H 0.03 1.54 7.11 -2.39 -0.02 1.52 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.03 1.15 6.32 -2.39 -0.02 1.13 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 1.96 6.57 -2.39 -0.02 1.94 16 33 H 0.05 1.37 6.86 -2.39 -0.02 1.36 16 34 H 0.01 0.41 7.58 -2.39 -0.02 0.39 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.34 7.11 8.99 -89.69 -0.81 6.31 16 37 H 0.35 6.09 9.08 -89.70 -0.81 5.28 16 38 H 0.04 1.23 6.76 -2.39 -0.02 1.21 16 39 H 0.07 1.59 6.85 -2.39 -0.02 1.58 16 40 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.06 2.27 7.68 -2.39 -0.02 2.26 16 42 H 0.04 1.71 5.17 -2.38 -0.01 1.69 16 Total: -1.00 -59.13 312.95 -0.61 -59.74 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.62 Total: 23.05 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.61 Total: -30.04 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -5.63 Total: -98.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -59.13 -0.61 -59.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723922497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.176 kcal (2) G-P(sol) polarization free energy of solvation -59.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds