Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47314 * 2 1 4 4 H 1.09008 * 109.47020 * 303.58829 * 3 2 1 5 5 C 1.50695 * 109.47272 * 183.58626 * 3 2 1 6 6 H 1.07997 * 120.00068 * 240.00267 * 5 3 2 7 7 C 1.37880 * 120.00202 * 59.99982 * 5 3 2 8 8 N 1.31517 * 119.99763 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47117 * 90.00029 * 9 7 5 11 11 H 1.48507 * 109.47026 * 210.00235 * 9 7 5 12 12 H 1.48496 * 109.47353 * 329.99885 * 9 7 5 13 13 N 1.46896 * 109.47145 * 63.58384 * 3 2 1 14 14 C 1.48556 * 111.00352 * 180.22024 * 13 3 2 15 15 C 1.54372 * 104.59854 * 200.96133 * 14 13 3 16 16 H 1.09007 * 110.32978 * 264.96038 * 15 14 13 17 17 C 1.52996 * 110.32741 * 142.85073 * 15 14 13 18 18 C 1.54262 * 105.14843 * 23.90460 * 15 14 13 19 19 H 1.09004 * 110.32526 * 241.05179 * 18 15 14 20 20 C 1.53007 * 110.32363 * 118.84498 * 18 15 14 21 21 C 1.53001 * 109.46905 * 174.99753 * 20 18 15 22 22 N 1.46898 * 109.46912 * 179.97438 * 21 20 18 23 23 C 1.48560 * 110.99896 * 64.80418 * 13 3 2 24 24 H 1.09004 * 109.47234 * 54.77387 * 1 2 3 25 25 H 1.08997 * 109.47368 * 174.77822 * 1 2 3 26 26 H 1.09005 * 109.46973 * 294.77627 * 1 2 3 27 27 H 1.09002 * 109.46719 * 240.00414 * 2 1 3 28 28 H 1.09001 * 109.47305 * 120.00147 * 2 1 3 29 29 H 0.96998 * 120.00103 * 180.02562 * 8 7 5 30 30 H 1.09011 * 110.41054 * 82.18435 * 14 13 3 31 31 H 1.08997 * 110.41072 * 319.74411 * 14 13 3 32 32 H 1.08998 * 109.47061 * 62.82697 * 17 15 14 33 33 H 1.09003 * 109.47533 * 182.82794 * 17 15 14 34 34 H 1.09000 * 109.47347 * 302.83305 * 17 15 14 35 35 H 1.08993 * 109.46825 * 294.99905 * 20 18 15 36 36 H 1.09003 * 109.47080 * 55.00231 * 20 18 15 37 37 H 1.08995 * 109.47635 * 300.00262 * 21 20 18 38 38 H 1.09003 * 109.46861 * 60.00344 * 21 20 18 39 39 H 1.00902 * 110.99930 * 180.02562 * 22 21 20 40 40 H 1.00905 * 111.00201 * 303.96063 * 22 21 20 41 41 H 1.09004 * 110.41476 * 277.82117 * 23 13 3 42 42 H 1.08999 * 110.41162 * 40.14210 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 -0.8561 5 6 3.5444 1.4434 -0.0889 6 1 4.1315 1.8944 0.6974 7 6 4.1713 0.8685 -1.1740 8 7 3.4563 0.3198 -2.1318 9 14 6.0360 0.8690 -1.2838 10 1 6.5701 -0.3578 -0.6398 11 1 6.4478 0.8987 -2.7103 12 1 6.5725 2.0666 -0.5888 13 7 1.6224 2.1096 1.2403 14 6 2.0963 3.5171 1.2735 15 6 2.0768 3.8990 2.7691 16 1 1.1419 4.4003 3.0199 17 6 3.2677 4.7995 3.1033 18 6 2.1875 2.5608 3.5284 19 1 1.3069 2.4052 4.1517 20 6 3.4560 2.5383 4.3836 21 6 3.4833 1.2585 5.2218 22 7 4.7015 1.2366 6.0424 23 6 2.2625 1.4810 2.4244 24 1 -0.3634 0.5928 -0.8395 25 1 -0.3634 -1.0234 -0.0935 26 1 -0.3633 0.4307 0.9331 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8972 -0.0850 -2.8951 30 1 1.4205 4.1592 0.7084 31 1 3.1090 3.5867 0.8765 32 1 3.1889 5.7298 2.5407 33 1 3.2688 5.0195 4.1709 34 1 4.1941 4.2909 2.8362 35 1 4.3317 2.5668 3.7354 36 1 3.4643 3.4053 5.0441 37 1 2.6076 1.2299 5.8700 38 1 3.4750 0.3914 4.5613 39 1 4.7433 0.4003 6.6054 40 1 5.5262 1.3271 5.4680 41 1 1.7120 0.5898 2.7260 42 1 3.3007 1.2300 2.2069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723922498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -32.770302 kcal Electronic energy + Delta-G solvation = -18755.640145 eV Core-core repulsion = 16154.830955 eV Total energy + Delta-G solvation = -2600.809191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58128 -37.23783 -35.57230 -33.89520 -32.43692 -31.37639 -28.89181 -27.15281 -26.36571 -24.66139 -23.42550 -22.14145 -20.95134 -19.66567 -18.41348 -17.14630 -16.81391 -16.58974 -15.96747 -15.65845 -15.12945 -15.00949 -14.60471 -14.19391 -13.94781 -13.86386 -13.48886 -13.29363 -13.12840 -12.85265 -12.66965 -12.47643 -12.39017 -12.06944 -12.03396 -11.82521 -11.58807 -11.46008 -11.29760 -11.21031 -11.05191 -10.90912 -10.44448 -9.60775 -8.99969 -8.04873 -6.25567 1.33942 1.36259 1.44498 2.37826 3.13980 3.49220 3.67936 3.83977 3.91926 4.14061 4.33428 4.43934 4.55088 4.57818 4.70397 4.71765 4.75227 4.78476 4.86311 4.89756 4.92173 5.00110 5.05479 5.18329 5.21055 5.23267 5.37133 5.40048 5.44112 5.45055 5.47015 5.60593 5.66969 5.77191 6.04051 6.18333 6.21641 6.37750 6.52062 6.58959 6.95939 7.43829 8.91323 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.008857 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.770242 B = 3160.438529 C = 3639.935356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.209 3.791 4 H -0.001 1.001 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.512 5.512 14 C 0.037 3.963 15 C -0.084 4.084 16 H 0.084 0.916 17 C -0.137 4.137 18 C -0.080 4.080 19 H 0.084 0.916 20 C -0.098 4.098 21 C 0.061 3.939 22 N -0.855 5.855 23 C 0.048 3.952 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.348 0.652 40 H 0.341 0.659 41 H 0.058 0.942 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 3.524 12.585 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.101 3.899 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.235 5.235 14 C -0.091 4.091 15 C -0.103 4.103 16 H 0.102 0.898 17 C -0.194 4.194 18 C -0.099 4.099 19 H 0.102 0.898 20 C -0.136 4.136 21 C -0.069 4.069 22 N -0.385 5.385 23 C -0.080 4.080 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.076 0.924 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.503 4.046 12.745 13.456 hybrid contribution 2.154 -1.143 -1.493 2.859 sum 0.650 2.903 11.252 11.639 Atomic orbital electron populations 1.21560 0.96298 0.99627 1.00727 1.21393 0.94455 0.98178 1.00160 1.19139 0.91909 0.91464 0.87370 0.98320 1.21906 0.93762 1.36946 1.05600 0.92842 1.25620 1.01782 0.95113 0.95513 1.70008 1.36313 1.38725 1.10114 0.85776 0.81613 0.78418 0.77188 1.20254 1.21014 1.19616 1.65624 1.52645 1.02059 1.03183 1.23065 0.98285 0.91005 0.96780 1.21861 0.99627 0.95648 0.93166 0.89783 1.21872 0.96855 0.98695 1.02023 1.21929 0.98457 0.94114 0.95419 0.89785 1.21638 0.96520 0.98292 0.97194 1.21796 0.93678 0.96550 0.94910 1.58789 1.04727 1.46241 1.28706 1.23026 0.97350 0.96945 0.90687 0.94842 0.93587 0.92592 0.92051 0.95356 0.93007 0.92308 0.95048 0.92619 0.90586 0.93940 0.93582 0.89892 0.90460 0.96609 0.83912 0.84654 0.92402 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.72 71.98 0.70 -4.40 16 2 C -0.10 -5.01 5.15 30.59 0.16 -4.85 16 3 C 0.21 10.57 1.84 44.17 0.08 10.66 16 4 H 0.00 -0.07 8.14 -2.38 -0.02 -0.08 16 5 C -0.54 -29.22 6.50 25.60 0.17 -29.05 16 6 H 0.05 2.88 5.68 -2.91 -0.02 2.86 16 7 C 0.02 1.06 5.30 84.65 0.45 1.51 16 8 N -0.91 -52.41 11.30 21.45 0.24 -52.16 16 9 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.51 -21.78 4.89 -860.27 -4.21 -25.99 16 14 C 0.04 1.44 5.83 86.45 0.50 1.95 16 15 C -0.08 -2.49 3.65 -9.90 -0.04 -2.53 16 16 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 17 C -0.14 -3.54 7.92 71.98 0.57 -2.97 16 18 C -0.08 -2.34 3.07 -9.82 -0.03 -2.37 16 19 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 20 C -0.10 -2.56 3.68 30.60 0.11 -2.45 16 21 C 0.06 1.47 6.66 86.30 0.57 2.05 16 22 N -0.85 -18.11 9.62 -186.72 -1.80 -19.91 16 23 C 0.05 1.83 4.14 86.53 0.36 2.19 16 24 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.15 7.86 -2.38 -0.02 2.14 16 27 H 0.06 3.36 5.98 -2.39 -0.01 3.34 16 28 H 0.03 1.34 6.90 -2.39 -0.02 1.32 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.03 1.38 5.96 -2.39 -0.01 1.37 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.62 6.76 -2.39 -0.02 1.61 16 34 H 0.04 1.22 6.83 -2.39 -0.02 1.21 16 35 H 0.05 1.36 6.91 -2.39 -0.02 1.35 16 36 H 0.08 1.95 6.52 -2.39 -0.02 1.94 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.02 0.42 7.59 -2.39 -0.02 0.40 16 39 H 0.35 6.07 9.08 -89.69 -0.81 5.25 16 40 H 0.34 7.08 8.99 -89.69 -0.81 6.27 16 41 H 0.06 2.18 7.61 -2.39 -0.02 2.16 16 42 H 0.03 1.43 5.49 -2.39 -0.01 1.41 16 Total: -1.00 -58.80 311.76 -0.75 -59.55 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.62 Total: 23.27 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.61 Total: -30.27 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -5.76 Total: -98.06 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -58.80 -0.75 -59.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723922498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.780 kcal (2) G-P(sol) polarization free energy of solvation -58.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds