Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46904 * 109.46661 * 65.00378 * 3 2 1 14 14 C 1.47905 * 110.99886 * 62.60546 * 13 3 2 15 15 C 1.53998 * 107.05761 * 145.84447 * 14 13 3 16 16 H 1.09001 * 110.30581 * 239.85843 * 15 14 13 17 17 C 1.52997 * 110.31036 * 117.68861 * 15 14 13 18 18 C 1.54591 * 105.13829 * 358.77008 * 15 14 13 19 19 H 1.09002 * 110.87895 * 96.47635 * 18 15 14 20 20 C 1.52997 * 110.72658 * 219.68451 * 18 15 14 21 21 C 1.53001 * 109.47483 * 179.97438 * 20 18 15 22 22 N 1.46901 * 109.47166 * 180.02562 * 21 20 18 23 23 C 1.48535 * 110.99831 * 179.97438 * 13 3 2 24 24 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 25 25 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 27 27 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 28 28 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.91406 * 265.19306 * 14 13 3 31 31 H 1.08996 * 109.91892 * 26.48515 * 14 13 3 32 32 H 1.09002 * 109.47075 * 304.28330 * 17 15 14 33 33 H 1.09006 * 109.46858 * 64.28090 * 17 15 14 34 34 H 1.08997 * 109.47189 * 184.28006 * 17 15 14 35 35 H 1.09000 * 109.47429 * 299.96047 * 20 18 15 36 36 H 1.09008 * 109.46877 * 59.95797 * 20 18 15 37 37 H 1.09005 * 109.46786 * 300.00107 * 21 20 18 38 38 H 1.08998 * 109.47105 * 60.00035 * 21 20 18 39 39 H 1.00903 * 110.99809 * 180.02562 * 22 21 20 40 40 H 1.00901 * 110.99775 * 303.95011 * 22 21 20 41 41 H 1.08996 * 110.66708 * 318.71666 * 23 13 3 42 42 H 1.09003 * 110.66708 * 81.67867 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5981 1.5571 -0.2002 11 1 6.5007 -0.5042 -1.4742 12 1 6.3938 1.6330 -2.6150 13 7 1.6514 2.0992 1.2553 14 6 2.2748 1.4308 2.4182 15 6 2.5759 2.5243 3.4599 16 1 3.6443 2.5599 3.6729 17 6 1.7855 2.2664 4.7442 18 6 2.1156 3.8457 2.8026 19 1 1.1099 4.1117 3.1281 20 6 3.0992 4.9759 3.1124 21 6 2.6174 6.2676 2.4489 22 7 3.5622 7.3526 2.7459 23 6 2.1311 3.5045 1.2916 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8287 -0.0519 -2.9548 30 1 1.5861 0.6975 2.8381 31 1 3.2006 0.9428 2.1137 32 1 0.7234 2.1958 4.5092 33 1 2.1206 1.3326 5.1957 34 1 1.9493 3.0870 5.4426 35 1 3.1574 5.1215 4.1910 36 1 4.0851 4.7152 2.7273 37 1 2.5590 6.1221 1.3702 38 1 1.6316 6.5281 2.8343 39 1 3.2656 8.2173 2.3187 40 1 3.6832 7.4643 3.7414 41 1 3.1422 3.5763 0.8911 42 1 1.4533 4.1567 0.7407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723922500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -19.551774 kcal Electronic energy + Delta-G solvation = -18559.312447 eV Core-core repulsion = 15959.076455 eV Total energy + Delta-G solvation = -2600.235992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.92456 -35.71842 -34.22894 -31.88335 -30.86168 -30.36804 -26.83093 -25.85514 -24.79206 -23.08811 -21.77570 -20.23931 -19.65505 -18.51223 -16.46069 -16.05410 -15.29040 -14.77591 -14.40804 -13.98146 -13.83002 -13.26952 -13.00127 -12.72845 -12.63861 -12.30175 -12.07765 -11.65142 -11.43803 -11.28713 -11.18241 -11.03413 -10.81727 -10.54446 -10.36346 -10.06164 -9.97672 -9.92657 -9.80305 -9.60466 -9.39271 -9.02015 -8.68855 -8.33237 -7.11499 -5.96343 -4.08775 3.27477 3.36315 3.40020 4.41917 4.54649 5.02182 5.15772 5.18776 5.28401 5.42111 5.45810 5.58716 5.72294 5.88696 5.95628 5.96518 6.08708 6.27251 6.30438 6.38197 6.42127 6.45215 6.50424 6.58809 6.68040 6.72014 6.84727 6.95084 7.02137 7.11911 7.13159 7.22448 7.36103 7.40740 7.65950 7.77881 8.02599 8.19435 8.30124 8.48936 9.02190 9.57925 11.03048 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.008483 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.841150 B = 3299.760976 C = 4117.867327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.044 3.956 15 C -0.099 4.099 16 H 0.066 0.934 17 C -0.136 4.136 18 C -0.086 4.086 19 H 0.071 0.929 20 C -0.106 4.106 21 C 0.061 3.939 22 N -0.853 5.853 23 C 0.046 3.954 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.338 0.662 40 H 0.335 0.665 41 H 0.059 0.941 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 7.167 10.197 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.097 3.903 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.239 5.239 14 C -0.084 4.084 15 C -0.118 4.118 16 H 0.084 0.916 17 C -0.193 4.193 18 C -0.106 4.106 19 H 0.089 0.911 20 C -0.144 4.144 21 C -0.070 4.070 22 N -0.382 5.382 23 C -0.083 4.083 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.908 6.577 9.623 12.013 hybrid contribution 1.162 0.404 0.175 1.242 sum -1.747 6.981 9.798 12.157 Atomic orbital electron populations 1.21709 0.98928 0.98345 1.00546 1.21569 0.92203 0.99214 1.01868 1.19395 0.93073 0.91236 0.86606 0.94480 1.21757 0.92833 1.37933 1.05272 0.92341 1.24910 0.97726 0.95095 0.95737 1.69887 1.34659 1.38523 1.09314 0.86656 0.86354 0.77672 0.78054 1.19864 1.21053 1.21032 1.65104 1.53626 1.01172 1.04027 1.22795 0.98924 0.95702 0.90995 1.22037 0.99108 0.95421 0.95237 0.91599 1.21793 1.00331 1.00410 0.96813 1.22122 0.98141 0.93479 0.96854 0.91057 1.21569 0.99889 0.93638 0.99316 1.21856 0.92399 0.91271 1.01454 1.58737 1.53026 1.09486 1.16911 1.23112 0.99963 0.91653 0.93524 0.94245 0.95663 0.93432 0.89070 0.95062 0.92999 0.92429 0.92082 0.92581 0.93203 0.93639 0.92870 0.91129 0.90502 0.95933 0.85033 0.85280 0.92244 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.64 5.16 -26.73 -0.14 -2.78 16 3 C 0.20 5.04 1.82 -68.86 -0.13 4.92 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.34 6.32 -34.44 -0.22 -14.55 16 6 H 0.06 1.57 6.04 -52.49 -0.32 1.25 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.00 11.30 55.43 0.63 -24.37 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.52 -10.95 4.76 -223.88 -1.07 -12.02 16 14 C 0.04 0.87 4.68 -2.75 -0.01 0.85 16 15 C -0.10 -1.60 3.17 -89.27 -0.28 -1.88 16 16 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 17 C -0.14 -1.83 8.89 37.16 0.33 -1.50 16 18 C -0.09 -1.35 2.63 -88.77 -0.23 -1.59 16 19 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 20 C -0.11 -1.47 4.86 -26.73 -0.13 -1.60 16 21 C 0.06 0.77 6.63 -3.82 -0.03 0.75 16 22 N -0.85 -9.66 9.62 -10.37 -0.10 -9.76 16 23 C 0.05 0.88 4.96 -1.91 -0.01 0.88 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 27 H 0.09 2.44 5.96 -51.93 -0.31 2.13 16 28 H 0.03 0.73 7.04 -51.93 -0.37 0.37 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.06 1.10 7.63 -51.92 -0.40 0.70 16 31 H 0.06 1.36 6.02 -51.93 -0.31 1.05 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.12 8.10 -51.92 -0.42 0.70 16 37 H 0.08 1.09 7.43 -51.93 -0.39 0.70 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 40 H 0.34 3.24 8.99 -39.29 -0.35 2.88 16 41 H 0.06 1.30 6.14 -51.93 -0.32 0.98 16 42 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -27.67 318.16 -9.03 -36.70 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.69 Total: 5.68 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.57 Total: -17.26 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.54 Total: -46.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.67 -9.03 -36.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723922500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.144 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds