Wall clock time and date at job start Mon Mar 30 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 N 1.46907 * 109.46948 * 119.99981 * 2 1 3 5 5 C 1.46897 * 110.99911 * 73.64837 * 4 2 1 6 6 C 1.50697 * 109.47412 * 72.80774 * 5 4 2 7 7 H 1.07996 * 119.99851 * 355.06320 * 6 5 4 8 8 C 1.37876 * 120.00152 * 175.06695 * 6 5 4 9 9 N 1.31519 * 119.99972 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00213 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47209 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47254 * 119.99651 * 10 8 6 13 13 H 1.48498 * 109.47477 * 239.99691 * 10 8 6 14 14 C 1.46896 * 111.00231 * 309.69107 * 4 2 1 15 15 H 1.09007 * 110.05531 * 320.10176 * 14 4 2 16 16 C 1.53880 * 110.03062 * 81.51271 * 14 4 2 17 17 C 1.54462 * 106.68053 * 119.44769 * 16 14 4 18 18 C 1.54888 * 104.10578 * 23.34332 * 17 16 14 19 19 H 1.08995 * 110.75909 * 80.70892 * 18 17 16 20 20 C 1.53005 * 110.75739 * 203.89758 * 18 17 16 21 21 N 1.46897 * 109.46770 * 291.06173 * 20 18 17 22 22 C 1.54258 * 110.03470 * 198.68273 * 14 4 2 23 23 H 1.09000 * 109.47098 * 301.70697 * 1 2 3 24 24 H 1.08994 * 109.46902 * 61.70524 * 1 2 3 25 25 H 1.09000 * 109.47392 * 181.71054 * 1 2 3 26 26 H 1.09000 * 109.46670 * 239.99767 * 2 1 3 27 27 H 1.08996 * 109.47357 * 184.78746 * 3 2 1 28 28 H 1.09001 * 109.46868 * 304.78360 * 3 2 1 29 29 H 1.09005 * 109.47099 * 64.78079 * 3 2 1 30 30 H 1.08998 * 109.47088 * 192.80799 * 5 4 2 31 31 H 1.09000 * 109.47365 * 312.80188 * 5 4 2 32 32 H 0.97003 * 120.00019 * 180.02562 * 9 8 6 33 33 H 1.09000 * 110.03410 * 238.57104 * 16 14 4 34 34 H 1.08993 * 110.03010 * 359.95211 * 16 14 4 35 35 H 1.09003 * 110.40455 * 264.75392 * 17 16 14 36 36 H 1.09005 * 110.66110 * 142.05409 * 17 16 14 37 37 H 1.08997 * 109.47005 * 171.06227 * 20 18 17 38 38 H 1.09001 * 109.47132 * 51.05957 * 20 18 17 39 39 H 1.00904 * 111.00203 * 56.04733 * 21 20 18 40 40 H 1.00899 * 110.99983 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.48905 * 98.42507 * 22 14 4 42 42 H 1.09005 * 110.60063 * 335.83719 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8311 -2.1447 1.0828 6 6 2.8239 -2.7025 0.0958 7 1 3.4708 -2.0356 -0.4548 8 6 2.9063 -4.0641 -0.1043 9 7 2.1188 -4.8763 0.5665 10 14 4.1365 -4.7556 -1.3283 11 1 4.8986 -3.6414 -1.9472 12 1 5.0754 -5.6665 -0.6256 13 1 3.4139 -5.5085 -2.3847 14 6 1.3694 -0.1728 2.4098 15 1 1.2665 0.9104 2.3431 16 6 -0.0137 -0.8238 2.5860 17 6 0.0170 -1.5714 3.9373 18 6 1.1313 -0.8549 4.7398 19 1 0.7559 0.0671 5.1836 20 6 1.7035 -1.7789 5.8168 21 7 0.6916 -2.0025 6.8580 22 6 2.1957 -0.5492 3.6568 23 1 -0.3633 0.5401 0.8743 24 1 -0.3633 0.4871 -0.9048 25 1 -0.3634 -1.0272 0.0307 26 1 1.8933 -0.5139 -0.8900 27 1 3.1267 1.4436 -0.0858 28 1 1.6085 1.9804 -0.8441 29 1 1.7484 1.9310 0.9298 30 1 1.9855 -2.6105 2.0561 31 1 0.8187 -2.3530 0.7369 32 1 2.1770 -5.8343 0.4259 33 1 -0.7878 -0.0566 2.6048 34 1 -0.2027 -1.5247 1.7730 35 1 0.2706 -2.6206 3.7855 36 1 -0.9409 -1.4797 4.4494 37 1 2.5855 -1.3172 6.2605 38 1 1.9797 -2.7329 5.3678 39 1 -0.1602 -2.3704 6.4614 40 1 1.0457 -2.6099 7.5818 41 1 2.8241 0.2866 3.9647 42 1 2.8051 -1.4316 3.4611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724063786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:06 Heat of formation + Delta-G solvation = -27.344642 kcal Electronic energy + Delta-G solvation = -18753.155874 eV Core-core repulsion = 16152.581957 eV Total energy + Delta-G solvation = -2600.573916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86916 -37.71126 -34.91369 -34.52107 -32.04626 -30.12769 -29.47764 -27.87579 -27.16773 -24.45136 -24.18175 -21.66902 -20.81331 -19.58050 -18.41403 -17.21545 -16.91153 -16.49380 -16.24272 -15.87416 -15.49866 -14.84958 -14.60818 -14.17308 -13.96926 -13.92195 -13.61117 -13.21370 -13.12960 -12.95366 -12.66475 -12.58192 -12.45061 -12.01172 -11.99806 -11.77165 -11.70229 -11.55725 -11.36382 -11.23419 -11.10835 -10.99690 -10.54443 -9.64814 -8.78195 -8.16710 -6.24944 1.37563 1.38686 1.51635 2.40331 3.13916 3.29372 3.72232 3.76119 3.78580 4.03665 4.21699 4.36457 4.45197 4.46363 4.55495 4.62205 4.66535 4.76586 4.79505 4.85120 4.89713 4.90524 5.02661 5.04061 5.06121 5.12049 5.19702 5.29333 5.31395 5.37298 5.47225 5.53765 5.59180 5.66242 5.72521 6.18093 6.19563 6.57055 6.58263 6.84726 6.93734 7.43766 8.92723 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018148 B = 0.008598 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.520175 B = 3255.876949 C = 4259.639894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.128 4.128 4 N -0.533 5.533 5 C 0.218 3.782 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.266 1.266 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.080 3.920 15 H 0.092 0.908 16 C -0.157 4.157 17 C -0.113 4.113 18 C -0.077 4.077 19 H 0.093 0.907 20 C 0.072 3.928 21 N -0.848 5.848 22 C -0.105 4.105 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.005 0.995 31 H -0.029 1.029 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.007 0.993 39 H 0.342 0.658 40 H 0.348 0.652 41 H 0.076 0.924 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 9.846 6.520 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.037 4.037 3 C -0.185 4.185 4 N -0.256 5.256 5 C 0.092 3.908 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.205 1.205 14 C -0.029 4.029 15 H 0.110 0.890 16 C -0.196 4.196 17 C -0.151 4.151 18 C -0.096 4.096 19 H 0.112 0.888 20 C -0.059 4.059 21 N -0.378 5.378 22 C -0.144 4.144 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.024 0.976 31 H -0.012 1.012 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.025 0.975 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.095 0.905 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.147 10.554 6.687 12.884 hybrid contribution -0.213 -2.336 -1.127 2.602 sum -3.360 8.218 5.560 10.475 Atomic orbital electron populations 1.22610 0.97428 1.00551 1.02633 1.21645 0.92962 0.95636 0.93417 1.21746 1.00903 0.93814 1.02073 1.62383 1.56391 1.05097 1.01735 1.19252 0.92964 0.83608 0.94974 1.21599 1.19759 0.91769 1.22634 0.92732 1.25808 0.97992 0.97484 0.98245 1.70090 1.40431 1.03477 1.43327 0.85467 0.78892 0.78295 0.78777 1.19008 1.20589 1.20525 1.22397 0.91154 0.98943 0.90360 0.89025 1.23128 0.98769 0.99924 0.97745 1.22355 0.99176 0.97883 0.95655 1.22039 0.94957 0.98856 0.93739 0.88827 1.21698 0.95176 0.96941 0.92085 1.58786 1.07721 1.56614 1.14683 1.22356 0.97371 1.00881 0.93770 0.90877 0.91670 0.95078 0.92804 0.93212 0.91107 0.91895 0.97645 1.01169 0.93016 0.90586 0.92929 0.94917 0.90398 0.90548 0.97503 0.84509 0.83961 0.90530 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 7.62 71.98 0.55 -5.24 16 2 C 0.07 2.71 2.79 44.91 0.13 2.83 16 3 C -0.13 -3.72 9.30 71.98 0.67 -3.05 16 4 N -0.53 -22.55 4.31 -846.21 -3.65 -26.20 16 5 C 0.22 11.44 3.38 85.56 0.29 11.73 16 6 C -0.52 -29.85 8.50 25.60 0.22 -29.64 16 7 H 0.05 3.14 7.51 -2.91 -0.02 3.11 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.08 2.77 2.30 45.64 0.11 2.87 16 15 H 0.09 2.75 5.93 -2.38 -0.01 2.73 16 16 C -0.16 -5.28 3.98 31.39 0.13 -5.15 16 17 C -0.11 -3.55 5.62 31.74 0.18 -3.37 16 18 C -0.08 -2.19 3.12 -9.50 -0.03 -2.22 16 19 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 20 C 0.07 1.96 6.27 86.31 0.54 2.51 16 21 N -0.85 -19.34 9.62 -186.72 -1.80 -21.14 16 22 C -0.11 -3.50 5.67 31.67 0.18 -3.32 16 23 H 0.07 2.15 5.28 -2.39 -0.01 2.13 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.21 5.63 -2.39 -0.01 1.19 16 26 H 0.05 2.35 7.05 -2.39 -0.02 2.33 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.64 6.30 -2.38 -0.02 1.63 16 30 H 0.01 0.32 6.64 -2.39 -0.02 0.30 16 31 H -0.03 -1.65 5.11 -2.39 -0.01 -1.66 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.08 2.15 7.27 -2.39 -0.02 2.14 16 34 H 0.05 2.15 3.83 -2.39 -0.01 2.14 16 35 H 0.03 1.23 7.98 -2.39 -0.02 1.21 16 36 H 0.08 2.07 8.03 -2.38 -0.02 2.05 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.01 0.22 8.05 -2.39 -0.02 0.20 16 39 H 0.34 7.55 8.24 -89.69 -0.74 6.81 16 40 H 0.35 6.66 9.08 -89.69 -0.81 5.85 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.04 1.75 6.75 -2.38 -0.02 1.73 16 Total: -1.00 -63.57 307.93 -0.26 -63.83 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.54 Total: 23.91 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 3.41 Total: -31.46 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -5.16 Total: -103.55 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -63.57 -0.26 -63.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724063786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.488 kcal (2) G-P(sol) polarization free energy of solvation -63.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds