Wall clock time and date at job start Mon Mar 30 2020 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47405 * 2 1 4 4 N 1.46895 * 109.47304 * 120.00357 * 2 1 3 5 5 C 1.46901 * 111.00486 * 80.58716 * 4 2 1 6 6 C 1.50699 * 109.46807 * 66.04699 * 5 4 2 7 7 H 1.08001 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00101 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99991 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47209 * 89.99746 * 10 8 6 12 12 H 1.48495 * 109.47229 * 210.00028 * 10 8 6 13 13 H 1.48504 * 109.47173 * 329.99698 * 10 8 6 14 14 C 1.46906 * 110.99804 * 316.63493 * 4 2 1 15 15 H 1.08995 * 110.66872 * 53.26496 * 14 4 2 16 16 C 1.54886 * 110.75482 * 290.03224 * 14 4 2 17 17 C 1.54265 * 104.19700 * 203.55807 * 16 14 4 18 18 C 1.53878 * 106.59843 * 23.60809 * 17 16 14 19 19 H 1.08995 * 110.03593 * 240.66926 * 18 17 16 20 20 C 1.53005 * 110.03061 * 119.28462 * 18 17 16 21 21 N 1.46894 * 109.47078 * 66.45817 * 20 18 17 22 22 C 1.54273 * 106.59586 * 0.02562 * 18 17 16 23 23 H 1.08990 * 109.47001 * 306.81447 * 1 2 3 24 24 H 1.09003 * 109.46691 * 66.81530 * 1 2 3 25 25 H 1.08996 * 109.47122 * 186.81501 * 1 2 3 26 26 H 1.09002 * 109.47052 * 239.99901 * 2 1 3 27 27 H 1.08994 * 109.46930 * 168.95442 * 3 2 1 28 28 H 1.08998 * 109.47002 * 288.95339 * 3 2 1 29 29 H 1.08997 * 109.46639 * 48.95482 * 3 2 1 30 30 H 1.08993 * 109.47395 * 186.04784 * 5 4 2 31 31 H 1.09000 * 109.47124 * 306.05037 * 5 4 2 32 32 H 0.96995 * 120.00084 * 180.02562 * 9 8 6 33 33 H 1.08994 * 110.48761 * 84.87958 * 16 14 4 34 34 H 1.09001 * 110.48460 * 322.23705 * 16 14 4 35 35 H 1.08998 * 110.03356 * 264.33233 * 17 16 14 36 36 H 1.08998 * 110.07567 * 142.91695 * 17 16 14 37 37 H 1.09003 * 109.46808 * 306.45688 * 20 18 17 38 38 H 1.08999 * 109.46674 * 186.45578 * 20 18 17 39 39 H 1.00907 * 111.00138 * 56.04114 * 21 20 18 40 40 H 1.00899 * 111.00443 * 179.97438 * 21 20 18 41 41 H 1.09003 * 110.48913 * 95.06737 * 22 18 17 42 42 H 1.09002 * 110.48207 * 217.70870 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.9838 -2.1498 1.0175 6 6 2.9678 -2.5468 -0.0526 7 1 3.5609 -1.7921 -0.5477 8 6 3.1110 -3.8735 -0.3996 9 7 2.3892 -4.7926 0.2036 10 14 4.3313 -4.3657 -1.7255 11 1 5.6517 -4.6427 -1.1049 12 1 3.8443 -5.5856 -2.4183 13 1 4.4680 -3.2602 -2.7075 14 6 1.2551 -0.2914 2.3879 15 1 0.1862 -0.4225 2.2200 16 6 1.5741 1.1734 2.7771 17 6 1.2273 1.2502 4.2783 18 6 1.3177 -0.1857 4.8242 19 1 0.3508 -0.4961 5.2203 20 6 2.3822 -0.2636 5.9204 21 7 1.9496 0.5274 7.0802 22 6 1.7168 -1.0847 3.6358 23 1 -0.3633 0.6158 0.8227 24 1 -0.3633 0.4046 -0.9447 25 1 -0.3633 -1.0204 0.1219 26 1 1.8933 -0.5139 -0.8900 27 1 3.1121 1.4487 0.1969 28 1 1.8465 1.8963 -0.9719 29 1 1.5250 2.0099 0.7751 30 1 2.2487 -2.6396 1.9544 31 1 0.9805 -2.4541 0.7194 32 1 2.4902 -5.7260 -0.0402 33 1 0.9530 1.8637 2.2064 34 1 2.6307 1.3889 2.6181 35 1 0.2163 1.6361 4.4087 36 1 1.9412 1.8916 4.7949 37 1 3.3240 0.1330 5.5410 38 1 2.5197 -1.3025 6.2201 39 1 1.0470 0.2206 7.4108 40 1 2.6361 0.4916 7.8187 41 1 2.7965 -1.2337 3.6159 42 1 1.1995 -2.0425 3.6914 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724063787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:09 Heat of formation + Delta-G solvation = -29.880174 kcal Electronic energy + Delta-G solvation = -18503.802626 eV Core-core repulsion = 15903.118761 eV Total energy + Delta-G solvation = -2600.683865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54458 -37.85169 -35.00852 -34.44270 -32.50721 -29.82765 -29.25108 -28.01178 -27.19873 -24.60602 -23.83972 -21.84021 -20.51209 -19.85914 -18.29775 -17.18601 -16.84327 -16.76735 -16.00118 -15.77308 -15.36257 -15.05078 -14.74728 -14.23371 -14.05422 -13.98927 -13.35962 -13.25908 -13.17127 -12.76836 -12.70325 -12.57005 -12.28832 -12.13271 -12.10652 -11.90198 -11.65454 -11.47565 -11.28651 -11.18680 -11.14956 -10.94169 -10.56789 -9.55998 -8.83542 -8.18350 -6.27130 1.39320 1.40608 1.51580 2.40390 3.13676 3.29627 3.60702 3.82738 3.86504 4.05712 4.21662 4.33067 4.38484 4.49790 4.56338 4.63790 4.72917 4.75391 4.79394 4.85585 4.91882 4.94312 5.02243 5.06067 5.09246 5.16075 5.26371 5.30066 5.31722 5.39962 5.48565 5.58977 5.61660 5.63734 5.72665 6.14050 6.24398 6.50226 6.65480 6.82732 6.91881 7.42062 8.92336 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.006888 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.824334 B = 4064.240310 C = 4813.566540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 C -0.138 4.138 4 N -0.528 5.528 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.071 3.929 15 H 0.037 0.963 16 C -0.106 4.106 17 C -0.098 4.098 18 C -0.080 4.080 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.848 5.848 22 C -0.107 4.107 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.010 0.990 31 H -0.044 1.044 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.345 0.655 40 H 0.349 0.651 41 H 0.056 0.944 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 12.365 8.402 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 C -0.195 4.195 4 N -0.252 5.252 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.189 1.189 14 C -0.037 4.037 15 H 0.055 0.945 16 C -0.144 4.144 17 C -0.136 4.136 18 C -0.099 4.099 19 H 0.089 0.911 20 C -0.057 4.057 21 N -0.379 5.379 22 C -0.146 4.146 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.028 0.972 31 H -0.026 1.026 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.074 0.926 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.375 12.944 7.981 15.391 hybrid contribution -0.314 -2.382 -0.376 2.431 sum -2.689 10.563 7.606 13.291 Atomic orbital electron populations 1.22311 0.97585 1.00199 1.02565 1.21638 0.92711 0.95891 0.93329 1.22064 1.01254 0.93975 1.02210 1.62378 1.53041 1.07146 1.02625 1.19349 0.93053 0.83967 0.95436 1.21497 1.21701 0.92431 1.19999 0.92304 1.25867 0.98086 0.96554 0.99125 1.70089 1.42253 1.01284 1.44035 0.85450 0.78870 0.77711 0.78999 1.19936 1.20845 1.18946 1.22692 0.94711 0.96378 0.89934 0.94546 1.22604 1.01615 0.94147 0.96005 1.22016 1.01998 0.95479 0.94145 1.21656 0.98454 0.95855 0.93978 0.91100 1.21751 0.97824 0.94686 0.91460 1.58688 1.08200 1.60374 1.10589 1.22346 1.00529 0.97203 0.94517 0.91183 0.91269 0.95722 0.92626 0.93168 0.91891 0.90417 0.97240 1.02646 0.92875 0.90413 0.91626 0.91342 0.90604 0.91565 0.96228 0.84201 0.83810 0.92567 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 7.96 71.98 0.57 -5.24 16 2 C 0.07 2.84 2.70 44.92 0.12 2.96 16 3 C -0.14 -4.18 8.36 71.98 0.60 -3.58 16 4 N -0.53 -22.98 4.35 -842.89 -3.67 -26.65 16 5 C 0.21 11.31 4.45 85.56 0.38 11.69 16 6 C -0.52 -30.00 8.22 25.60 0.21 -29.79 16 7 H 0.06 3.37 7.33 -2.91 -0.02 3.35 16 8 C 0.00 0.07 5.46 84.66 0.46 0.53 16 9 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.07 2.58 1.95 46.21 0.09 2.67 16 15 H 0.04 1.36 6.00 -2.39 -0.01 1.35 16 16 C -0.11 -3.00 4.46 31.67 0.14 -2.86 16 17 C -0.10 -2.40 6.27 31.32 0.20 -2.20 16 18 C -0.08 -2.12 3.10 -10.06 -0.03 -2.15 16 19 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 20 C 0.07 1.74 5.81 86.31 0.50 2.25 16 21 N -0.85 -15.62 9.32 -186.72 -1.74 -17.36 16 22 C -0.11 -3.82 4.38 31.68 0.14 -3.68 16 23 H 0.07 2.11 6.16 -2.39 -0.01 2.10 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.02 0.98 6.95 -2.39 -0.02 0.96 16 26 H 0.06 2.52 6.58 -2.39 -0.02 2.51 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.04 4.58 -2.39 -0.01 2.03 16 30 H 0.01 0.56 6.32 -2.39 -0.02 0.54 16 31 H -0.04 -2.63 6.93 -2.39 -0.02 -2.65 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.08 1.95 5.65 -2.39 -0.01 1.94 16 34 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.35 5.51 8.99 -89.69 -0.81 4.70 16 40 H 0.35 5.21 9.08 -89.69 -0.81 4.39 16 41 H 0.06 2.21 7.79 -2.39 -0.02 2.19 16 42 H 0.04 1.47 7.78 -2.39 -0.02 1.45 16 Total: -1.00 -64.59 311.85 -0.33 -64.92 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.62 Total: 18.35 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.39 Total: -29.40 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.12 Total: -101.17 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.59 -0.33 -64.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724063787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.038 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds