Wall clock time and date at job start Mon Mar 30 2020 04:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 N 1.46900 * 109.47143 * 119.99755 * 2 1 3 5 5 C 1.46904 * 110.99671 * 293.46272 * 4 2 1 6 6 C 1.50703 * 109.47200 * 76.70846 * 5 4 2 7 7 H 1.08001 * 120.00137 * 4.38893 * 6 5 4 8 8 C 1.37876 * 119.99697 * 184.39011 * 6 5 4 9 9 N 1.31513 * 120.00561 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46723 * 60.00223 * 10 8 6 12 12 H 1.48499 * 109.47047 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47077 * 300.00414 * 10 8 6 14 14 C 1.46892 * 111.00143 * 169.51095 * 4 2 1 15 15 H 1.09000 * 110.01830 * 58.60148 * 14 4 2 16 16 C 1.54271 * 110.03088 * 297.16486 * 14 4 2 17 17 C 1.54883 * 104.19777 * 217.10452 * 16 14 4 18 18 C 1.54886 * 102.74825 * 37.94187 * 17 16 14 19 19 H 1.09000 * 110.60049 * 80.79385 * 18 17 16 20 20 C 1.53005 * 110.49090 * 203.37860 * 18 17 16 21 21 N 1.46899 * 109.46710 * 289.77930 * 20 18 17 22 22 C 1.53873 * 110.03401 * 180.02562 * 14 4 2 23 23 H 1.08999 * 109.47440 * 306.01750 * 1 2 3 24 24 H 1.08998 * 109.47272 * 66.02047 * 1 2 3 25 25 H 1.09002 * 109.46781 * 186.01688 * 1 2 3 26 26 H 1.08994 * 109.46999 * 239.99687 * 2 1 3 27 27 H 1.08998 * 109.46840 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46947 * 299.99660 * 3 2 1 29 29 H 1.08994 * 109.47191 * 59.99348 * 3 2 1 30 30 H 1.09008 * 109.46670 * 196.70187 * 5 4 2 31 31 H 1.08999 * 109.47321 * 316.70236 * 5 4 2 32 32 H 0.96995 * 120.00243 * 179.97438 * 9 8 6 33 33 H 1.09000 * 110.48765 * 335.78711 * 16 14 4 34 34 H 1.09004 * 110.48423 * 98.42310 * 16 14 4 35 35 H 1.09002 * 110.75534 * 279.62918 * 17 16 14 36 36 H 1.08998 * 110.75619 * 156.25350 * 17 16 14 37 37 H 1.08998 * 109.46680 * 49.77503 * 20 18 17 38 38 H 1.08991 * 109.47562 * 169.77392 * 20 18 17 39 39 H 1.00893 * 111.00625 * 56.04512 * 21 20 18 40 40 H 1.00900 * 110.99397 * 179.97438 * 21 20 18 41 41 H 1.09004 * 110.03103 * 238.56324 * 22 14 4 42 42 H 1.08992 * 110.02953 * 359.94633 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 1.6804 0.0580 2.4159 6 6 0.2228 -0.1446 2.7409 7 1 -0.3730 -0.8238 2.1493 8 6 -0.3499 0.5372 3.7936 9 7 0.3757 1.3640 4.5143 10 14 -2.1568 0.2867 4.1960 11 1 -2.3981 -1.1423 4.5204 12 1 -2.5252 1.1277 5.3632 13 1 -2.9833 0.6748 3.0249 14 6 3.4665 -0.9321 1.1152 15 1 3.9953 0.0140 0.9992 16 6 3.7796 -1.8629 -0.0746 17 6 4.9356 -2.7577 0.4371 18 6 4.5483 -3.0036 1.9165 19 1 3.8026 -3.7951 1.9912 20 6 5.7867 -3.3569 2.7427 21 7 6.2623 -4.6944 2.3646 22 6 3.9552 -1.6580 2.3809 23 1 -0.3634 0.6043 0.8312 24 1 -0.3634 0.4176 -0.9389 25 1 -0.3633 -1.0220 0.1077 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.2907 -0.2994 3.2454 31 1 1.8726 1.1186 2.2540 32 1 -0.0274 1.8439 5.2546 33 1 2.9090 -2.4696 -0.3237 34 1 4.1008 -1.2819 -0.9391 35 1 5.8889 -2.2336 0.3694 36 1 4.9700 -3.6972 -0.1144 37 1 6.5715 -2.6249 2.5521 38 1 5.5313 -3.3481 3.8022 39 1 6.4446 -4.7467 1.3737 40 1 7.0804 -4.9509 2.8965 41 1 4.7218 -1.0646 2.8792 42 1 3.1190 -1.8316 3.0580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724063789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:14 Heat of formation + Delta-G solvation = -7.117759 kcal Electronic energy + Delta-G solvation = -18537.029456 eV Core-core repulsion = 15937.332643 eV Total energy + Delta-G solvation = -2599.696813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04179 -36.62590 -33.70198 -32.50802 -30.45848 -28.89751 -27.55700 -26.32325 -25.60078 -23.44915 -21.92424 -20.29299 -19.38472 -18.03726 -16.48711 -15.89702 -15.78010 -14.93749 -14.68189 -14.43095 -13.75783 -13.50306 -13.06774 -12.91023 -12.55035 -12.37190 -12.12328 -11.62399 -11.24567 -11.19114 -11.04685 -10.75235 -10.61311 -10.45869 -10.40448 -10.39858 -10.26031 -10.15744 -10.04082 -9.85876 -9.25487 -8.98149 -8.70545 -8.30257 -7.06685 -5.95073 -3.91619 3.36813 3.41197 3.44276 4.47309 4.56543 4.89479 4.90880 5.08902 5.19988 5.38533 5.51217 5.66637 5.73431 5.78954 5.90096 5.93153 5.99791 6.03354 6.08993 6.17444 6.22455 6.25512 6.37356 6.43402 6.54806 6.65192 6.73978 6.75312 6.78543 6.89628 7.02824 7.13485 7.34153 7.40212 7.50141 7.59846 7.93751 8.26061 8.34581 8.68522 9.13702 9.68038 11.15167 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.007005 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.155079 B = 3996.319972 C = 4680.797458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 C -0.186 4.186 4 N -0.524 5.524 5 C 0.177 3.823 6 C -0.495 4.495 7 H 0.069 0.931 8 C 0.051 3.949 9 N -0.902 5.902 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.082 3.918 15 H 0.029 0.971 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.086 4.086 19 H 0.083 0.917 20 C 0.068 3.932 21 N -0.851 5.851 22 C -0.114 4.114 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.007 0.993 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.338 0.662 40 H 0.336 0.664 41 H 0.053 0.947 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -5.677 -7.489 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 C -0.244 4.244 4 N -0.248 5.248 5 C 0.052 3.948 6 C -0.533 4.533 7 H 0.087 0.913 8 C -0.149 4.149 9 N -0.542 5.542 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.203 1.203 14 C -0.028 4.028 15 H 0.047 0.953 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.105 4.105 19 H 0.101 0.899 20 C -0.063 4.063 21 N -0.380 5.380 22 C -0.152 4.152 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.072 0.928 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.454 -6.256 -7.025 12.647 hybrid contribution 0.379 1.350 -0.004 1.402 sum 8.833 -4.906 -7.029 12.308 Atomic orbital electron populations 1.22130 0.94500 1.02518 1.00948 1.21412 0.96228 0.91247 0.92962 1.22483 0.99886 0.99782 1.02297 1.62564 1.09819 1.48872 1.03553 1.19974 0.96748 0.91951 0.86107 1.21310 0.94911 1.24043 1.13082 0.91300 1.24973 0.97836 0.95692 0.96385 1.69945 1.35918 1.28384 1.19961 0.86672 0.85604 0.78089 0.77725 1.20296 1.21572 1.20314 1.22125 0.90419 0.96004 0.94214 0.95266 1.22408 0.98104 0.97640 0.97027 1.22521 0.98007 0.99026 0.96108 1.21970 0.96376 0.98270 0.93904 0.89863 1.21882 0.95981 0.88329 1.00068 1.58737 1.40056 1.28943 1.10283 1.22285 1.00472 0.94418 0.98001 0.88862 0.95406 0.92922 0.92546 0.94059 0.93689 0.90654 0.95233 0.97531 0.93101 0.90563 0.92897 0.92507 0.92060 0.95845 0.91082 0.85004 0.85251 0.92789 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.80 37.16 0.29 -2.57 16 2 C 0.09 1.74 2.79 -67.71 -0.19 1.55 16 3 C -0.19 -3.46 8.51 37.16 0.32 -3.14 16 4 N -0.52 -10.96 4.25 -218.81 -0.93 -11.89 16 5 C 0.18 4.43 4.20 -4.97 -0.02 4.41 16 6 C -0.49 -13.37 6.60 -34.44 -0.23 -13.59 16 7 H 0.07 1.85 6.01 -52.49 -0.32 1.54 16 8 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 9 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.08 1.46 2.48 -66.60 -0.16 1.30 16 15 H 0.03 0.55 6.62 -51.93 -0.34 0.20 16 16 C -0.11 -1.70 5.10 -25.07 -0.13 -1.83 16 17 C -0.12 -1.52 5.69 -24.74 -0.14 -1.66 16 18 C -0.09 -1.23 3.09 -88.99 -0.27 -1.51 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.07 0.84 6.12 -3.82 -0.02 0.82 16 21 N -0.85 -9.21 9.62 -10.37 -0.10 -9.31 16 22 C -0.11 -1.96 5.23 -25.64 -0.13 -2.09 16 23 H 0.09 2.14 5.62 -51.93 -0.29 1.85 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.06 7.63 -51.93 -0.40 0.66 16 26 H 0.06 0.99 6.83 -51.93 -0.35 0.64 16 27 H 0.04 0.72 6.69 -51.93 -0.35 0.38 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.63 5.98 -51.93 -0.31 1.31 16 30 H 0.03 0.79 5.71 -51.92 -0.30 0.49 16 31 H 0.01 0.19 5.34 -51.93 -0.28 -0.09 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 33 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 36 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 37 H 0.02 0.28 8.02 -51.93 -0.42 -0.14 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.34 3.25 8.28 -39.30 -0.33 2.93 16 40 H 0.34 2.96 9.08 -39.29 -0.36 2.61 16 41 H 0.05 0.89 7.84 -51.93 -0.41 0.49 16 42 H 0.09 1.81 6.31 -51.93 -0.33 1.48 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -28.30 310.04 -8.70 -37.00 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.26 Total: 5.69 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.79 Total: -16.99 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.29 Total: -46.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.30 -8.70 -37.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724063789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.881 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds