Wall clock time and date at job start Mon Mar 30 2020 04:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 N 1.46900 * 109.47143 * 119.99755 * 2 1 3 5 5 C 1.46904 * 110.99671 * 293.46272 * 4 2 1 6 6 C 1.50703 * 109.47200 * 76.70846 * 5 4 2 7 7 H 1.08001 * 120.00137 * 4.38893 * 6 5 4 8 8 C 1.37876 * 119.99697 * 184.39011 * 6 5 4 9 9 N 1.31513 * 120.00561 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46723 * 60.00223 * 10 8 6 12 12 H 1.48499 * 109.47047 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47077 * 300.00414 * 10 8 6 14 14 C 1.46892 * 111.00143 * 169.51095 * 4 2 1 15 15 H 1.09000 * 110.01830 * 58.60148 * 14 4 2 16 16 C 1.54271 * 110.03088 * 297.16486 * 14 4 2 17 17 C 1.54883 * 104.19777 * 217.10452 * 16 14 4 18 18 C 1.54886 * 102.74825 * 37.94187 * 17 16 14 19 19 H 1.09000 * 110.60049 * 80.79385 * 18 17 16 20 20 C 1.53005 * 110.49090 * 203.37860 * 18 17 16 21 21 N 1.46899 * 109.46710 * 289.77930 * 20 18 17 22 22 C 1.53873 * 110.03401 * 180.02562 * 14 4 2 23 23 H 1.08999 * 109.47440 * 306.01750 * 1 2 3 24 24 H 1.08998 * 109.47272 * 66.02047 * 1 2 3 25 25 H 1.09002 * 109.46781 * 186.01688 * 1 2 3 26 26 H 1.08994 * 109.46999 * 239.99687 * 2 1 3 27 27 H 1.08998 * 109.46840 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46947 * 299.99660 * 3 2 1 29 29 H 1.08994 * 109.47191 * 59.99348 * 3 2 1 30 30 H 1.09008 * 109.46670 * 196.70187 * 5 4 2 31 31 H 1.08999 * 109.47321 * 316.70236 * 5 4 2 32 32 H 0.96995 * 120.00243 * 179.97438 * 9 8 6 33 33 H 1.09000 * 110.48765 * 335.78711 * 16 14 4 34 34 H 1.09004 * 110.48423 * 98.42310 * 16 14 4 35 35 H 1.09002 * 110.75534 * 279.62918 * 17 16 14 36 36 H 1.08998 * 110.75619 * 156.25350 * 17 16 14 37 37 H 1.08998 * 109.46680 * 49.77503 * 20 18 17 38 38 H 1.08991 * 109.47562 * 169.77392 * 20 18 17 39 39 H 1.00893 * 111.00625 * 56.04512 * 21 20 18 40 40 H 1.00900 * 110.99397 * 179.97438 * 21 20 18 41 41 H 1.09004 * 110.03103 * 238.56324 * 22 14 4 42 42 H 1.08992 * 110.02953 * 359.94633 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 1.6804 0.0580 2.4159 6 6 0.2228 -0.1446 2.7409 7 1 -0.3730 -0.8238 2.1493 8 6 -0.3499 0.5372 3.7936 9 7 0.3757 1.3640 4.5143 10 14 -2.1568 0.2867 4.1960 11 1 -2.3981 -1.1423 4.5204 12 1 -2.5252 1.1277 5.3632 13 1 -2.9833 0.6748 3.0249 14 6 3.4665 -0.9321 1.1152 15 1 3.9953 0.0140 0.9992 16 6 3.7796 -1.8629 -0.0746 17 6 4.9356 -2.7577 0.4371 18 6 4.5483 -3.0036 1.9165 19 1 3.8026 -3.7951 1.9912 20 6 5.7867 -3.3569 2.7427 21 7 6.2623 -4.6944 2.3646 22 6 3.9552 -1.6580 2.3809 23 1 -0.3634 0.6043 0.8312 24 1 -0.3634 0.4176 -0.9389 25 1 -0.3633 -1.0220 0.1077 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.2907 -0.2994 3.2454 31 1 1.8726 1.1186 2.2540 32 1 -0.0274 1.8439 5.2546 33 1 2.9090 -2.4696 -0.3237 34 1 4.1008 -1.2819 -0.9391 35 1 5.8889 -2.2336 0.3694 36 1 4.9700 -3.6972 -0.1144 37 1 6.5715 -2.6249 2.5521 38 1 5.5313 -3.3481 3.8022 39 1 6.4446 -4.7467 1.3737 40 1 7.0804 -4.9509 2.8965 41 1 4.7218 -1.0646 2.8792 42 1 3.1190 -1.8316 3.0580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724063789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:14 Heat of formation + Delta-G solvation = -26.421444 kcal Electronic energy + Delta-G solvation = -18537.866526 eV Core-core repulsion = 15937.332643 eV Total energy + Delta-G solvation = -2600.533883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48057 -38.01499 -34.94392 -34.46252 -32.01234 -30.20579 -29.26198 -27.88529 -27.16547 -24.87747 -23.55766 -21.70011 -20.62762 -19.60281 -18.45684 -17.49931 -16.83513 -16.50959 -16.12248 -15.84658 -15.25718 -14.99150 -14.43984 -14.28774 -13.97158 -13.86613 -13.64820 -13.20714 -13.03943 -12.86257 -12.71730 -12.47664 -12.27751 -12.10197 -11.89593 -11.69980 -11.63385 -11.48771 -11.42259 -11.38934 -11.05720 -10.89884 -10.43574 -9.56720 -8.79672 -8.09438 -6.12336 1.41840 1.43841 1.51048 2.44843 3.21820 3.35472 3.57756 3.73859 3.90353 4.07086 4.19467 4.36948 4.40752 4.50734 4.57670 4.64094 4.64870 4.73007 4.82403 4.89383 4.90394 4.98820 5.00827 5.11538 5.13260 5.17525 5.22386 5.28718 5.39322 5.41146 5.47678 5.58027 5.64626 5.81069 5.82914 6.24599 6.28022 6.57172 6.67750 6.85860 7.00484 7.51423 9.00241 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.007005 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.155079 B = 3996.319972 C = 4680.797458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 C -0.176 4.176 4 N -0.531 5.531 5 C 0.193 3.807 6 C -0.496 4.496 7 H 0.067 0.933 8 C -0.002 4.002 9 N -0.939 5.939 10 Si 0.954 3.046 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.076 3.924 15 H 0.023 0.977 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.079 4.079 19 H 0.065 0.935 20 C 0.074 3.926 21 N -0.855 5.855 22 C -0.112 4.112 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.004 0.996 31 H -0.017 1.017 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.348 0.652 40 H 0.349 0.651 41 H 0.054 0.946 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.106 -6.814 -9.560 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 C -0.235 4.235 4 N -0.255 5.255 5 C 0.067 3.933 6 C -0.535 4.535 7 H 0.086 0.914 8 C -0.198 4.198 9 N -0.581 5.581 10 Si 0.779 3.221 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.192 1.192 14 C -0.033 4.033 15 H 0.041 0.959 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.098 4.098 19 H 0.083 0.917 20 C -0.057 4.057 21 N -0.387 5.387 22 C -0.151 4.151 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.000 1.000 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.148 -7.412 -9.118 14.892 hybrid contribution 0.199 1.696 0.612 1.814 sum 9.347 -5.716 -8.506 13.870 Atomic orbital electron populations 1.22008 0.95053 1.01477 1.01017 1.21553 0.95870 0.91795 0.93003 1.22356 1.00332 0.99181 1.01588 1.62501 1.12127 1.48143 1.02727 1.19611 0.95488 0.90812 0.87371 1.21588 0.95886 1.23326 1.12684 0.91442 1.25765 1.02052 0.95584 0.96442 1.70078 1.37721 1.29640 1.20652 0.85670 0.80692 0.78029 0.77668 1.19818 1.21421 1.19236 1.22288 0.88364 0.96553 0.96073 0.95906 1.22358 0.98720 0.97263 0.96111 1.22473 0.97718 0.99758 0.94385 1.21845 0.96665 0.95631 0.95660 0.91679 1.21711 0.95382 0.89616 0.98945 1.58654 1.41039 1.27689 1.11282 1.22213 0.99186 0.96451 0.97223 0.92483 0.92374 0.93592 0.89661 0.93216 0.91100 0.94484 0.97778 0.99958 0.93240 0.91398 0.90952 0.90814 0.89852 0.94701 0.92392 0.83894 0.83770 0.92720 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 7.80 71.98 0.56 -4.82 16 2 C 0.09 3.22 2.79 44.92 0.13 3.35 16 3 C -0.18 -6.42 8.51 71.98 0.61 -5.81 16 4 N -0.53 -22.47 4.25 -846.17 -3.59 -26.06 16 5 C 0.19 10.11 4.20 85.56 0.36 10.47 16 6 C -0.50 -27.68 6.60 25.60 0.17 -27.51 16 7 H 0.07 3.71 6.01 -2.91 -0.02 3.69 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.94 -57.03 13.29 21.45 0.28 -56.74 16 10 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.08 2.69 2.48 45.64 0.11 2.80 16 15 H 0.02 0.85 6.62 -2.39 -0.02 0.83 16 16 C -0.11 -2.91 5.10 31.67 0.16 -2.75 16 17 C -0.11 -2.37 5.69 31.88 0.18 -2.19 16 18 C -0.08 -2.18 3.09 -9.74 -0.03 -2.21 16 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 20 C 0.07 1.74 6.12 86.31 0.53 2.26 16 21 N -0.86 -16.50 9.62 -186.72 -1.80 -18.29 16 22 C -0.11 -3.96 5.23 31.30 0.16 -3.80 16 23 H 0.06 2.64 5.62 -2.39 -0.01 2.63 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.81 7.63 -2.39 -0.02 1.79 16 26 H 0.09 2.74 6.83 -2.39 -0.02 2.72 16 27 H 0.05 1.70 6.69 -2.39 -0.02 1.68 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.63 5.98 -2.39 -0.01 1.62 16 30 H 0.00 0.24 5.71 -2.38 -0.01 0.23 16 31 H -0.02 -0.97 5.34 -2.39 -0.01 -0.99 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.46 7.97 -2.39 -0.02 1.44 16 36 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16 37 H 0.03 0.74 8.02 -2.39 -0.02 0.72 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.35 5.58 8.28 -89.70 -0.74 4.84 16 40 H 0.35 5.32 9.08 -89.69 -0.81 4.51 16 41 H 0.05 1.86 7.84 -2.38 -0.02 1.84 16 42 H 0.05 2.08 6.31 -2.39 -0.02 2.07 16 Total: -1.00 -63.10 310.04 -0.22 -63.32 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.55 Total: 20.58 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.41 Total: -29.83 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -5.11 Total: -101.10 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.10 -0.22 -63.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724063789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.900 kcal (2) G-P(sol) polarization free energy of solvation -63.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds